RNA–Protein interactions for RNA: ENST00000532540.5

TGFBR3-209, Transcript of transforming growth factor beta receptor 3, humanhuman

TSL 1 (best)

Gene TGFBR3, Length 3,913 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-209ENST00000532540 NISCHQ9Y2I1 1504 aa13.15□□□□□ -0.3
TGFBR3-209ENST00000532540 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
TGFBR3-209ENST00000532540 SHROOM4Q9ULL8 1493 aa11.79□□□□□ -0.52
TGFBR3-209ENST00000532540 ABCC9O60706 1549 aa11.66□□□□□ -0.54
TGFBR3-209ENST00000532540 PELP1Q8IZL8 1130 aaKnown RBP11.53□□□□□ -0.56
TGFBR3-209ENST00000532540 SUPT5HO00267 1087 aaKnown RBP11.45□□□□□ -0.58
TGFBR3-209ENST00000532540 PABPN1Q86U42 306 aaKnown RBP eCLIP11.35□□□□□ -0.59
TGFBR3-209ENST00000532540 MYT1Q01538 1121 aa11.34□□□□□ -0.59
TGFBR3-209ENST00000532540 CCDC180Q9P1Z9 1646 aa11.01□□□□□ -0.65
TGFBR3-209ENST00000532540 EHMT2Q96KQ7 1210 aa10.99□□□□□ -0.65
TGFBR3-209ENST00000532540 HRCP23327 699 aa10.91□□□□□ -0.66
TGFBR3-209ENST00000532540 ZCCHC6Q5VYS8 1495 aaKnown RBP10.89□□□□□ -0.67
TGFBR3-209ENST00000532540 SCRIBQ14160 1630 aa10.87□□□□□ -0.67
TGFBR3-209ENST00000532540 DNAJC5BQ9UF47 199 aa10.84□□□□□ -0.67
TGFBR3-209ENST00000532540 PCGF6Q9BYE7 350 aa10.78□□□□□ -0.68
TGFBR3-209ENST00000532540 FAM9AQ8IZU1 332 aaPredicted RBP10.76□□□□□ -0.69
TGFBR3-209ENST00000532540 RB1CC1Q8TDY2 1594 aa10.71□□□□□ -0.7
TGFBR3-209ENST00000532540 NACADO15069 1562 aa10.62□□□□□ -0.71
TGFBR3-209ENST00000532540 RANGAP1P46060 587 aaPredicted RBP10.62□□□□□ -0.71
TGFBR3-209ENST00000532540 PPARGC1BQ86YN6 1023 aaKnown RBP10.61□□□□□ -0.71
TGFBR3-209ENST00000532540 CENPBP07199 599 aaPredicted RBP10.6□□□□□ -0.71
TGFBR3-209ENST00000532540 TTBK1Q5TCY1 1321 aaPredicted RBP10.59□□□□□ -0.71
TGFBR3-209ENST00000532540 ZEB1P37275 1124 aaPredicted RBP10.56□□□□□ -0.72
TGFBR3-209ENST00000532540 CECR2Q9BXF3 1484 aa10.53□□□□□ -0.72
TGFBR3-209ENST00000532540 TRIM41Q8WV44 630 aa10.52□□□□□ -0.72
TGFBR3-209ENST00000532540 DCAF1Q9Y4B6 1507 aa10.41□□□□□ -0.74
TGFBR3-209ENST00000532540 SCAF1Q9H7N4 1312 aaKnown RBP10.38□□□□□ -0.75
TGFBR3-209ENST00000532540 RSF1Q96T23 1441 aaPredicted RBP10.36□□□□□ -0.75
TGFBR3-209ENST00000532540 CHIC1Q5VXU3 224 aa10.32□□□□□ -0.76
TGFBR3-209ENST00000532540 FBLN2P98095 1184 aa10.32□□□□□ -0.76
TGFBR3-209ENST00000532540 UBTFP17480 764 aaKnown RBP10.3□□□□□ -0.76
TGFBR3-209ENST00000532540 MROH2BQ7Z745 1585 aa10.3□□□□□ -0.76
TGFBR3-209ENST00000532540 ATP1B4Q9UN42 357 aaPredicted RBP10.3□□□□□ -0.76
TGFBR3-209ENST00000532540 GTF3C3Q9Y5Q9 886 aa10.3□□□□□ -0.76
TGFBR3-209ENST00000532540 LOC105371045A0A1W2PR82 267 aa10.3□□□□□ -0.76
TGFBR3-209ENST00000532540 TRIM26Q12899 539 aaPredicted RBP10.27□□□□□ -0.77
TGFBR3-209ENST00000532540 ACIN1Q9UKV3 1341 aaKnown RBP10.27□□□□□ -0.77
TGFBR3-209ENST00000532540 MYO15BQ96JP2 1530 aa10.26□□□□□ -0.77
TGFBR3-209ENST00000532540 BAZ1BQ9UIG0 1483 aaKnown RBP10.25□□□□□ -0.77
TGFBR3-209ENST00000532540 UNC13AQ9UPW8 1703 aa10.23□□□□□ -0.77
TGFBR3-209ENST00000532540 ERICH6Q7L0X2 663 aa10.22□□□□□ -0.77
TGFBR3-209ENST00000532540 BICRAQ9NZM4 1560 aa10.19□□□□□ -0.78
TGFBR3-209ENST00000532540 YTHDC1Q96MU7 727 aaKnown RBP10.18□□□□□ -0.78
TGFBR3-209ENST00000532540 BAZ1AQ9NRL2 1556 aaPredicted RBP10.18□□□□□ -0.78
TGFBR3-209ENST00000532540 WIZO95785 1651 aa10.14□□□□□ -0.79
TGFBR3-209ENST00000532540 ATAD2BQ9ULI0 1458 aa10.13□□□□□ -0.79
TGFBR3-209ENST00000532540 ARID3CA6NKF2 412 aa10.12□□□□□ -0.79
TGFBR3-209ENST00000532540 CCER1Q8TC90 406 aaPredicted RBP10.12□□□□□ -0.79
TGFBR3-209ENST00000532540 BCL11AQ9H165 835 aa10.11□□□□□ -0.79
TGFBR3-209ENST00000532540 EIF4G1Q04637 1599 aaKnown RBP10.11□□□□□ -0.79
TGFBR3-209ENST00000532540 ERCC6Q03468 1493 aa10.11□□□□□ -0.79
TGFBR3-209ENST00000532540 NEUROD1Q13562 356 aa10.1□□□□□ -0.79
TGFBR3-209ENST00000532540 P3H3Q8IVL6 736 aa10.1□□□□□ -0.79
TGFBR3-209ENST00000532540 CC2D2AQ9P2K1 1620 aa10.09□□□□□ -0.79
TGFBR3-209ENST00000532540 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.08□□□□□ -0.8
TGFBR3-209ENST00000532540 HNRNPUL2Q1KMD3 747 aaKnown RBP10.08□□□□□ -0.8
TGFBR3-209ENST00000532540 CCDC88BA6NC98 1476 aa10.06□□□□□ -0.8
TGFBR3-209ENST00000532540 DIEXFQ68CQ4 756 aaKnown RBP10.06□□□□□ -0.8
TGFBR3-209ENST00000532540 APLP2Q06481 763 aa10.05□□□□□ -0.8
TGFBR3-209ENST00000532540 SMARCA4P51532 1647 aa10.05□□□□□ -0.8
TGFBR3-209ENST00000532540 NESP48681 1621 aa10.02□□□□□ -0.81
TGFBR3-209ENST00000532540 SMARCA2P51531 1590 aa10□□□□□ -0.81
TGFBR3-209ENST00000532540 CADPSQ9ULU8 1353 aa9.97□□□□□ -0.81
TGFBR3-209ENST00000532540 CSRNP3Q8WYN3 585 aa9.97□□□□□ -0.81
TGFBR3-209ENST00000532540 CHMP7Q8WUX9 453 aaPredicted RBP9.96□□□□□ -0.82
TGFBR3-209ENST00000532540 ANP32EQ9BTT0 268 aa9.95□□□□□ -0.82
TGFBR3-209ENST00000532540 TDRD9Q8NDG6 1382 aaKnown RBP9.94□□□□□ -0.82
TGFBR3-209ENST00000532540 ABCC8Q09428 1581 aa9.94□□□□□ -0.82
TGFBR3-209ENST00000532540 DNAJC5Q9H3Z4 198 aa9.94□□□□□ -0.82
TGFBR3-209ENST00000532540 NCAPD3P42695 1498 aa9.93□□□□□ -0.82
TGFBR3-209ENST00000532540 WRNQ14191 1432 aaPredicted RBP eCLIP9.93□□□□□ -0.82
TGFBR3-209ENST00000532540 ITGAEP38570 1179 aa9.91□□□□□ -0.82
TGFBR3-209ENST00000532540 NEFLP07196 543 aa9.9□□□□□ -0.82
TGFBR3-209ENST00000532540 TOP2AP11388 1531 aaKnown RBP9.89□□□□□ -0.83
TGFBR3-209ENST00000532540 PDS5BQ9NTI5 1447 aa9.89□□□□□ -0.83
TGFBR3-209ENST00000532540 FANCD2Q9BXW9 1451 aa9.85□□□□□ -0.83
TGFBR3-209ENST00000532540 SOGA1O94964 1423 aa9.85□□□□□ -0.83
TGFBR3-209ENST00000532540 MYT1LQ9UL68 1186 aa9.85□□□□□ -0.83
TGFBR3-209ENST00000532540 PRKCSHP14314 528 aaPredicted RBP9.83□□□□□ -0.84
TGFBR3-209ENST00000532540 CUX2O14529 1486 aa9.81□□□□□ -0.84
TGFBR3-209ENST00000532540 CEP164Q9UPV0 1460 aa9.8□□□□□ -0.84
TGFBR3-209ENST00000532540 CLSPNQ9HAW4 1339 aa9.8□□□□□ -0.84
TGFBR3-209ENST00000532540 RAD54L2Q9Y4B4 1467 aa9.79□□□□□ -0.84
TGFBR3-209ENST00000532540 RUSC2Q8N2Y8 1516 aa9.76□□□□□ -0.85
TGFBR3-209ENST00000532540 AQRO60306 1485 aaKnown RBP eCLIP9.75□□□□□ -0.854e-7■■■■□ 23.2
TGFBR3-209ENST00000532540 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
TGFBR3-209ENST00000532540 KCNH8Q96L42 1107 aa9.73□□□□□ -0.85
TGFBR3-209ENST00000532540 KIF27Q86VH2 1401 aa9.72□□□□□ -0.85
TGFBR3-209ENST00000532540 ZNF777Q9ULD5 760 aaPredicted RBP9.71□□□□□ -0.85
TGFBR3-209ENST00000532540 CFTRP13569 1480 aa9.71□□□□□ -0.85
TGFBR3-209ENST00000532540 BCANQ96GW7 911 aa9.7□□□□□ -0.86
TGFBR3-209ENST00000532540 RTL5Q5HYW3 569 aaPredicted RBP9.7□□□□□ -0.86
TGFBR3-209ENST00000532540 FAM50AQ14320 339 aaKnown RBP9.7□□□□□ -0.86
TGFBR3-209ENST00000532540 CARMIL1Q5VZK9 1371 aa9.7□□□□□ -0.86
TGFBR3-209ENST00000532540 HMGXB3Q12766 1538 aa9.7□□□□□ -0.86
TGFBR3-209ENST00000532540 CYB5RLQ6IPT4 315 aa9.69□□□□□ -0.86
TGFBR3-209ENST00000532540 PLPPR3Q6T4P5 718 aa9.68□□□□□ -0.86
TGFBR3-209ENST00000532540 FGD5Q6ZNL6 1462 aa9.68□□□□□ -0.86
TGFBR3-209ENST00000532540 NPM1P06748 294 aaKnown RBP eCLIP9.66□□□□□ -0.86
TGFBR3-209ENST00000532540 TRHP20396 242 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms