RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RUSC2Q8N2Y8 1516 aa25.46■■□□□ 1.67
VPS28-215ENST00000531924 CUL7Q14999 1698 aa25.42■■□□□ 1.66
VPS28-215ENST00000531924 NPM1P06748 294 aaKnown RBP eCLIP25.42■■□□□ 1.66
VPS28-215ENST00000531924 KIAA0586Q9BVV6 1533 aa25.41■■□□□ 1.66
VPS28-215ENST00000531924 CARMIL1Q5VZK9 1371 aa25.39■■□□□ 1.65
VPS28-215ENST00000531924 TTBK1Q5TCY1 1321 aaPredicted RBP25.27■■□□□ 1.64
VPS28-215ENST00000531924 CARMIL2Q6F5E8 1435 aa25.23■■□□□ 1.63
VPS28-215ENST00000531924 FAM69CQ0P6D2 419 aa25.23■■□□□ 1.63
VPS28-215ENST00000531924 PTPRGP23470 1445 aa25.22■■□□□ 1.63
VPS28-215ENST00000531924 AEBP2Q6ZN18 517 aaPredicted RBP25.2■■□□□ 1.62
VPS28-215ENST00000531924 ADCY10Q96PN6 1610 aa25.18■■□□□ 1.62
VPS28-215ENST00000531924 MAPKBP1O60336 1514 aa25.16■■□□□ 1.62
VPS28-215ENST00000531924 TNIKQ9UKE5 1360 aa25.16■■□□□ 1.62
VPS28-215ENST00000531924 ABCC10Q5T3U5 1492 aa25.15■■□□□ 1.62
VPS28-215ENST00000531924 IQGAP2Q13576 1575 aa25.15■■□□□ 1.62
VPS28-215ENST00000531924 RAPGEF2Q9Y4G8 1499 aa25.15■■□□□ 1.62
VPS28-215ENST00000531924 KIF13AQ9H1H9 1805 aa25.13■■□□□ 1.61
VPS28-215ENST00000531924 DIP2BQ9P265 1576 aa25.04■■□□□ 1.6
VPS28-215ENST00000531924 ABCC2Q92887 1545 aa25.02■■□□□ 1.6
VPS28-215ENST00000531924 DISP1Q96F81 1524 aa25■■□□□ 1.59
VPS28-215ENST00000531924 UACAQ9BZF9 1416 aa24.99■■□□□ 1.59
VPS28-215ENST00000531924 UGGT2Q9NYU1 1516 aa24.98■■□□□ 1.59
VPS28-215ENST00000531924 UHRF1BP1LA0JNW5 1464 aa24.96■■□□□ 1.59
VPS28-215ENST00000531924 PLB1Q6P1J6 1458 aa24.94■■□□□ 1.58
VPS28-215ENST00000531924 ASXL2Q76L83 1435 aa24.94■■□□□ 1.58
VPS28-215ENST00000531924 KIAA0556O60303 1618 aa24.9■■□□□ 1.58
VPS28-215ENST00000531924 GOLGA3Q08378 1498 aa24.88■■□□□ 1.57
VPS28-215ENST00000531924 TSPOAP1O95153 1857 aa24.87■■□□□ 1.57
VPS28-215ENST00000531924 FAM9AQ8IZU1 332 aaPredicted RBP24.87■■□□□ 1.57
VPS28-215ENST00000531924 KDM6BO15054 1643 aa24.86■■□□□ 1.57
VPS28-215ENST00000531924 PRXQ9BXM0 1461 aa24.85■■□□□ 1.57
VPS28-215ENST00000531924 CTTNBP2Q8WZ74 1663 aa24.84■■□□□ 1.57
VPS28-215ENST00000531924 KDM5BQ9UGL1 1544 aa24.83■■□□□ 1.57
VPS28-215ENST00000531924 GLI2P10070 1586 aa24.8■■□□□ 1.56
VPS28-215ENST00000531924 CSRNP3Q8WYN3 585 aa24.79■■□□□ 1.56
VPS28-215ENST00000531924 ZCCHC11Q5TAX3 1644 aaKnown RBP24.76■■□□□ 1.55
VPS28-215ENST00000531924 EPRSP07814 1512 aaKnown RBP24.76■■□□□ 1.55
VPS28-215ENST00000531924 P3H3Q8IVL6 736 aa24.72■■□□□ 1.55
VPS28-215ENST00000531924 WDR7Q9Y4E6 1490 aa24.7■■□□□ 1.54
VPS28-215ENST00000531924 KCNH8Q96L42 1107 aa24.69■■□□□ 1.54
VPS28-215ENST00000531924 TEX14Q8IWB6 1497 aa24.69■■□□□ 1.54
VPS28-215ENST00000531924 EEA1Q15075 1411 aa24.67■■□□□ 1.54
VPS28-215ENST00000531924 ABCA8O94911 1581 aa24.66■■□□□ 1.54
VPS28-215ENST00000531924 ARID3CA6NKF2 412 aa24.64■■□□□ 1.54
VPS28-215ENST00000531924 PPRC1Q5VV67 1664 aaKnown RBP24.64■■□□□ 1.53
VPS28-215ENST00000531924 MAP3K4Q9Y6R4 1608 aa24.64■■□□□ 1.53
VPS28-215ENST00000531924 RANGAP1P46060 587 aaPredicted RBP24.62■■□□□ 1.53
VPS28-215ENST00000531924 KDM4FA0A1W2PPD8 638 aa24.59■■□□□ 1.53
VPS28-215ENST00000531924 CD109Q6YHK3 1445 aa24.59■■□□□ 1.53
VPS28-215ENST00000531924 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.55■■□□□ 1.52
VPS28-215ENST00000531924 HNRNPUL2Q1KMD3 747 aaKnown RBP24.55■■□□□ 1.52
VPS28-215ENST00000531924 COL17A1Q9UMD9 1497 aaPredicted RBP24.54■■□□□ 1.52
VPS28-215ENST00000531924 ATP10BO94823 1461 aa24.51■■□□□ 1.51
VPS28-215ENST00000531924 MAGI3Q5TCQ9 1506 aa24.5■■□□□ 1.51
VPS28-215ENST00000531924 SAMD9Q5K651 1589 aa24.5■■□□□ 1.51
VPS28-215ENST00000531924 CFAP43Q8NDM7 1665 aa24.48■■□□□ 1.51
VPS28-215ENST00000531924 RAPGEF6Q8TEU7 1601 aa24.43■■□□□ 1.5
VPS28-215ENST00000531924 FHOD3Q2V2M9 1422 aa24.43■■□□□ 1.5
VPS28-215ENST00000531924 ADGRL1O94910 1474 aa24.42■■□□□ 1.5
VPS28-215ENST00000531924 EHMT2Q96KQ7 1210 aa24.41■■□□□ 1.5
VPS28-215ENST00000531924 UBTFP17480 764 aaKnown RBP24.4■■□□□ 1.5
VPS28-215ENST00000531924 KIF21BO75037 1637 aa24.38■■□□□ 1.49
VPS28-215ENST00000531924 PLEKHD1A6NEE1 506 aa24.36■■□□□ 1.49
VPS28-215ENST00000531924 NUP153P49790 1475 aaKnown RBP24.35■■□□□ 1.49
VPS28-215ENST00000531924 CHIC1Q5VXU3 224 aa24.35■■□□□ 1.49
VPS28-215ENST00000531924 EFCAB5A4FU69 1503 aa24.34■■□□□ 1.49
VPS28-215ENST00000531924 PHLDB1Q86UU1 1377 aa24.33■■□□□ 1.49
VPS28-215ENST00000531924 ABCA9Q8IUA7 1624 aa24.31■■□□□ 1.48
VPS28-215ENST00000531924 ARAP3Q8WWN8 1544 aa24.3■■□□□ 1.48
VPS28-215ENST00000531924 ATP1B4Q9UN42 357 aaPredicted RBP24.27■■□□□ 1.48
VPS28-215ENST00000531924 NEO1Q92859 1461 aa24.25■■□□□ 1.47
VPS28-215ENST00000531924 RAPGEF3O95398 923 aa24.24■■□□□ 1.47
VPS28-215ENST00000531924 FMN1Q68DA7 1419 aa24.18■■□□□ 1.46
VPS28-215ENST00000531924 CDK11AQ9UQ88 783 aaPredicted RBP24.15■■□□□ 1.46
VPS28-215ENST00000531924 ARID4BQ4LE39 1312 aaPredicted RBP24.13■■□□□ 1.45
VPS28-215ENST00000531924 CDK13Q14004 1512 aaKnown RBP24.13■■□□□ 1.45
VPS28-215ENST00000531924 FANCAO15360 1455 aa24.12■■□□□ 1.45
VPS28-215ENST00000531924 DENND4BO75064 1496 aaPredicted RBP24.11■■□□□ 1.45
VPS28-215ENST00000531924 ARHGAP35Q9NRY4 1499 aa24.11■■□□□ 1.45
VPS28-215ENST00000531924 AKNAQ7Z591 1439 aa24.1■■□□□ 1.45
VPS28-215ENST00000531924 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.1■■□□□ 1.457e-7■■□□□ 14.3
VPS28-215ENST00000531924 CFAP74Q9C0B2 1584 aa24.08■■□□□ 1.44
VPS28-215ENST00000531924 HECW1Q76N89 1606 aa24.07■■□□□ 1.44
VPS28-215ENST00000531924 TTC37Q6PGP7 1564 aa24.05■■□□□ 1.44
VPS28-215ENST00000531924 FRMPD1Q5SYB0 1578 aa24.03■■□□□ 1.44
VPS28-215ENST00000531924 HECW2Q9P2P5 1572 aa24.03■■□□□ 1.44
VPS28-215ENST00000531924 PLCH2O75038 1416 aa24.01■■□□□ 1.43
VPS28-215ENST00000531924 EFCAB2Q5VUJ9 269 aa24■■□□□ 1.43
VPS28-215ENST00000531924 CLIP1P30622 1438 aa23.99■■□□□ 1.43
VPS28-215ENST00000531924 SCAPERQ9BY12 1400 aa23.96■■□□□ 1.43
VPS28-215ENST00000531924 ARHGEF40Q8TER5 1519 aa23.95■■□□□ 1.43
VPS28-215ENST00000531924 PTPRMP28827 1452 aa23.95■■□□□ 1.42
VPS28-215ENST00000531924 TROQ12816 1431 aaPredicted RBP23.95■■□□□ 1.42
VPS28-215ENST00000531924 RICTORQ6R327 1708 aa23.95■■□□□ 1.42
VPS28-215ENST00000531924 POGZQ7Z3K3 1410 aa23.93■■□□□ 1.42
VPS28-215ENST00000531924 ADAMTSL3P82987 1691 aa23.93■■□□□ 1.42
VPS28-215ENST00000531924 KIF14Q15058 1648 aa23.93■■□□□ 1.42
VPS28-215ENST00000531924 ZFYVE16Q7Z3T8 1539 aa23.92■■□□□ 1.42
VPS28-215ENST00000531924 MAGI2Q86UL8 1455 aa23.92■■□□□ 1.42
VPS28-215ENST00000531924 BCORL1Q5H9F3 1711 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms