RNA–Protein interactions for RNA: ENST00000531050.5

PTPRK-219, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 1 (best)

Gene PTPRK, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-219ENST00000531050 BRPF3Q9ULD4 1205 aa10.78□□□□□ -0.68
PTPRK-219ENST00000531050 DHX57Q6P158 1386 aaKnown RBP10.77□□□□□ -0.69
PTPRK-219ENST00000531050 PABPN1Q86U42 306 aaKnown RBP eCLIP10.77□□□□□ -0.69
PTPRK-219ENST00000531050 RSPH6AQ9H0K4 717 aa10.76□□□□□ -0.69
PTPRK-219ENST00000531050 IPO9Q96P70 1041 aaKnown RBP10.76□□□□□ -0.69
PTPRK-219ENST00000531050 GLIPR1L2Q4G1C9 344 aa10.74□□□□□ -0.69
PTPRK-219ENST00000531050 VSIG10Q8N0Z9 540 aa10.74□□□□□ -0.69
PTPRK-219ENST00000531050 PPP4R2Q9NY27 417 aa10.74□□□□□ -0.69
PTPRK-219ENST00000531050 CCER2I3L3R5 266 aa10.72□□□□□ -0.69
PTPRK-219ENST00000531050 ZBTB47Q9UFB7 747 aaPredicted RBP10.71□□□□□ -0.69
PTPRK-219ENST00000531050 TNIKQ9UKE5 1360 aa10.71□□□□□ -0.7
PTPRK-219ENST00000531050 SOGA1O94964 1423 aa10.71□□□□□ -0.7
PTPRK-219ENST00000531050 EEA1Q15075 1411 aa10.7□□□□□ -0.7
PTPRK-219ENST00000531050 USP35Q9P2H5 1018 aa10.69□□□□□ -0.7
PTPRK-219ENST00000531050 DDX10Q13206 875 aaKnown RBP10.69□□□□□ -0.7
PTPRK-219ENST00000531050 ANP32AP39687 249 aaKnown RBP10.68□□□□□ -0.7
PTPRK-219ENST00000531050 ATAD2BQ9ULI0 1458 aa10.68□□□□□ -0.7
PTPRK-219ENST00000531050 PPP1R15AO75807 674 aaPredicted RBP10.67□□□□□ -0.7
PTPRK-219ENST00000531050 B4GALNT3Q6L9W6 998 aa10.66□□□□□ -0.7
PTPRK-219ENST00000531050 RUSC2Q8N2Y8 1516 aa10.66□□□□□ -0.7
PTPRK-219ENST00000531050 NEFMP07197 916 aa10.66□□□□□ -0.7
PTPRK-219ENST00000531050 SYNJ1O43426 1573 aa10.65□□□□□ -0.7
PTPRK-219ENST00000531050 BAZ1BQ9UIG0 1483 aaKnown RBP10.65□□□□□ -0.7
PTPRK-219ENST00000531050 FAM43AQ8N2R8 423 aa10.63□□□□□ -0.71
PTPRK-219ENST00000531050 GOLGA3Q08378 1498 aa10.62□□□□□ -0.71
PTPRK-219ENST00000531050 LAS1LQ9Y4W2 734 aaKnown RBP10.61□□□□□ -0.71
PTPRK-219ENST00000531050 GSE1Q14687 1217 aa10.6□□□□□ -0.71
PTPRK-219ENST00000531050 ANP32CO43423 234 aa10.59□□□□□ -0.71
PTPRK-219ENST00000531050 KIF21BO75037 1637 aa10.59□□□□□ -0.71
PTPRK-219ENST00000531050 A0A0U1RQG5 324 aaPredicted RBP10.58□□□□□ -0.72
PTPRK-219ENST00000531050 RBM10P98175 930 aaKnown RBP10.58□□□□□ -0.72
PTPRK-219ENST00000531050 HNRNPUQ00839 825 aaKnown RBP eCLIP10.58□□□□□ -0.72
PTPRK-219ENST00000531050 AAMPQ13685 434 aa10.57□□□□□ -0.72
PTPRK-219ENST00000531050 FGD1P98174 961 aa10.57□□□□□ -0.72
PTPRK-219ENST00000531050 CEP164Q9UPV0 1460 aa10.55□□□□□ -0.72
PTPRK-219ENST00000531050 PPM1GO15355 546 aaPredicted RBP10.55□□□□□ -0.72
PTPRK-219ENST00000531050 FRAT1Q92837 279 aaPredicted RBP10.54□□□□□ -0.72
PTPRK-219ENST00000531050 TOP2BQ02880 1626 aa10.53□□□□□ -0.72
PTPRK-219ENST00000531050 UBTFP17480 764 aaKnown RBP10.53□□□□□ -0.72
PTPRK-219ENST00000531050 HMGXB3Q12766 1538 aa10.53□□□□□ -0.72
PTPRK-219ENST00000531050 RRP9O43818 475 aaKnown RBP10.53□□□□□ -0.72
PTPRK-219ENST00000531050 PDE4CQ08493 712 aa10.53□□□□□ -0.72
PTPRK-219ENST00000531050 HSP90AA2PQ14568 343 aaPredicted RBP10.52□□□□□ -0.72
PTPRK-219ENST00000531050 BIVM-ERCC5R4GMW8 1640 aa10.52□□□□□ -0.72
PTPRK-219ENST00000531050 DCAF11Q8TEB1 546 aa10.51□□□□□ -0.73
PTPRK-219ENST00000531050 NCAPD3P42695 1498 aa10.51□□□□□ -0.73
PTPRK-219ENST00000531050 WDR97A6NE52 1622 aa10.51□□□□□ -0.73
PTPRK-219ENST00000531050 CLIP1P30622 1438 aa10.49□□□□□ -0.73
PTPRK-219ENST00000531050 RRAGDQ9NQL2 400 aaPredicted RBP10.49□□□□□ -0.73
PTPRK-219ENST00000531050 CUX2O14529 1486 aa10.48□□□□□ -0.73
PTPRK-219ENST00000531050 VPS8Q8N3P4 1428 aa10.48□□□□□ -0.73
PTPRK-219ENST00000531050 MAPKBP1O60336 1514 aa10.47□□□□□ -0.73
PTPRK-219ENST00000531050 NPM2Q86SE8 214 aaKnown RBP10.47□□□□□ -0.73
PTPRK-219ENST00000531050 SIN3AQ96ST3 1273 aa10.47□□□□□ -0.73
PTPRK-219ENST00000531050 RAPGEF2Q9Y4G8 1499 aa10.47□□□□□ -0.73
PTPRK-219ENST00000531050 NFKBIBQ15653 356 aa10.46□□□□□ -0.73
PTPRK-219ENST00000531050 HIRIP3Q9BW71 556 aaPredicted RBP10.46□□□□□ -0.74
PTPRK-219ENST00000531050 HSP90AA1P07900 732 aaKnown RBP10.45□□□□□ -0.74
PTPRK-219ENST00000531050 PDIA4P13667 645 aaKnown RBP10.44□□□□□ -0.74
PTPRK-219ENST00000531050 BCL11BQ9C0K0 894 aaPredicted RBP10.43□□□□□ -0.74
PTPRK-219ENST00000531050 PRDM4Q9UKN5 801 aa10.43□□□□□ -0.74
PTPRK-219ENST00000531050 CUX1P39880 1505 aa10.42□□□□□ -0.74
PTPRK-219ENST00000531050 ERICH3Q5RHP9 1530 aa10.42□□□□□ -0.74
PTPRK-219ENST00000531050 NAP1L5Q96NT1 182 aaPredicted RBP10.41□□□□□ -0.74
PTPRK-219ENST00000531050 PRDM2Q13029 1718 aa10.41□□□□□ -0.74
PTPRK-219ENST00000531050 CFTRP13569 1480 aa10.39□□□□□ -0.75
PTPRK-219ENST00000531050 PRXQ9BXM0 1461 aa10.39□□□□□ -0.75
PTPRK-219ENST00000531050 PDE4AP27815 886 aa10.38□□□□□ -0.75
PTPRK-219ENST00000531050 ZBED9Q6R2W3 1325 aa10.38□□□□□ -0.75
PTPRK-219ENST00000531050 RNF123Q5XPI4 1314 aa10.37□□□□□ -0.75
PTPRK-219ENST00000531050 RRBP1Q9P2E9 1410 aaKnown RBP10.37□□□□□ -0.75
PTPRK-219ENST00000531050 CALD1Q05682 793 aaKnown RBP10.37□□□□□ -0.75
PTPRK-219ENST00000531050 BACH2Q9BYV9 841 aa10.37□□□□□ -0.75
PTPRK-219ENST00000531050 PNNQ9H307 717 aaKnown RBP10.36□□□□□ -0.75
PTPRK-219ENST00000531050 TCERG1O14776 1098 aaKnown RBP10.35□□□□□ -0.75
PTPRK-219ENST00000531050 CCDC184Q52MB2 194 aa10.35□□□□□ -0.75
PTPRK-219ENST00000531050 AKNAQ7Z591 1439 aa10.35□□□□□ -0.75
PTPRK-219ENST00000531050 CENPJQ9HC77 1338 aaPredicted RBP10.35□□□□□ -0.75
PTPRK-219ENST00000531050 RAB3GAP2Q9H2M9 1393 aa10.34□□□□□ -0.75
PTPRK-219ENST00000531050 ARAP1Q96P48 1450 aa10.34□□□□□ -0.75
PTPRK-219ENST00000531050 RGS3P49796 1198 aa10.34□□□□□ -0.75
PTPRK-219ENST00000531050 DDRGK1Q96HY6 314 aa10.34□□□□□ -0.75
PTPRK-219ENST00000531050 CLCN1P35523 988 aa10.33□□□□□ -0.76
PTPRK-219ENST00000531050 KIF27Q86VH2 1401 aa10.33□□□□□ -0.76
PTPRK-219ENST00000531050 FRAT2O75474 233 aaPredicted RBP10.33□□□□□ -0.76
PTPRK-219ENST00000531050 SMG6Q86US8 1419 aaKnown RBP10.32□□□□□ -0.76
PTPRK-219ENST00000531050 MS4A1P11836 297 aa10.31□□□□□ -0.76
PTPRK-219ENST00000531050 SLC4A3P48751 1232 aa10.3□□□□□ -0.76
PTPRK-219ENST00000531050 RANGAP1P46060 587 aaPredicted RBP10.3□□□□□ -0.76
PTPRK-219ENST00000531050 PDCL3Q9H2J4 239 aa10.3□□□□□ -0.76
PTPRK-219ENST00000531050 KANK4Q5T7N3 995 aaPredicted RBP10.29□□□□□ -0.76
PTPRK-219ENST00000531050 DNAJC5BQ9UF47 199 aa10.28□□□□□ -0.76
PTPRK-219ENST00000531050 CCNB3Q8WWL7 1395 aa10.28□□□□□ -0.76
PTPRK-219ENST00000531050 CC2D2AQ9P2K1 1620 aa10.28□□□□□ -0.76
PTPRK-219ENST00000531050 FAM9BQ8IZU0 186 aa10.28□□□□□ -0.76
PTPRK-219ENST00000531050 POGKQ9P215 609 aa10.26□□□□□ -0.77
PTPRK-219ENST00000531050 NUDCQ9Y266 331 aa10.26□□□□□ -0.77
PTPRK-219ENST00000531050 CADPSQ9ULU8 1353 aa10.25□□□□□ -0.77
PTPRK-219ENST00000531050 L1TD1Q5T7N2 865 aaKnown RBP10.25□□□□□ -0.77
PTPRK-219ENST00000531050 TAF7LQ5H9L4 462 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms