RNA–Protein interactions for RNA: ENST00000531050.5

PTPRK-219, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 1 (best)

Gene PTPRK, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-219ENST00000531050 NISCHQ9Y2I1 1504 aa14.4□□□□□ -0.1
PTPRK-219ENST00000531050 PELP1Q8IZL8 1130 aaKnown RBP13.69□□□□□ -0.22
PTPRK-219ENST00000531050 HRCP23327 699 aa13.39□□□□□ -0.27
PTPRK-219ENST00000531050 MYT1Q01538 1121 aa13.31□□□□□ -0.28
PTPRK-219ENST00000531050 PPARGC1BQ86YN6 1023 aaKnown RBP13.06□□□□□ -0.32
PTPRK-219ENST00000531050 SCAF1Q9H7N4 1312 aaKnown RBP12.97□□□□□ -0.33
PTPRK-219ENST00000531050 PCGF6Q9BYE7 350 aa12.78□□□□□ -0.36
PTPRK-219ENST00000531050 TTBK1Q5TCY1 1321 aaPredicted RBP12.68□□□□□ -0.38
PTPRK-219ENST00000531050 MYO15BQ96JP2 1530 aa12.58□□□□□ -0.4
PTPRK-219ENST00000531050 ACIN1Q9UKV3 1341 aaKnown RBP12.46□□□□□ -0.41
PTPRK-219ENST00000531050 BCL11AQ9H165 835 aa12.42□□□□□ -0.42
PTPRK-219ENST00000531050 NEUROD1Q13562 356 aa12.4□□□□□ -0.42
PTPRK-219ENST00000531050 PRKCSHP14314 528 aaPredicted RBP12.37□□□□□ -0.43
PTPRK-219ENST00000531050 GTF3C3Q9Y5Q9 886 aa12.36□□□□□ -0.43
PTPRK-219ENST00000531050 DCAF1Q9Y4B6 1507 aa12.34□□□□□ -0.43
PTPRK-219ENST00000531050 CCDC180Q9P1Z9 1646 aa12.33□□□□□ -0.44
PTPRK-219ENST00000531050 ZEB1P37275 1124 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-219ENST00000531050 FAM9AQ8IZU1 332 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-219ENST00000531050 AEBP2Q6ZN18 517 aaPredicted RBP12.28□□□□□ -0.44
PTPRK-219ENST00000531050 CENPBP07199 599 aaPredicted RBP12.26□□□□□ -0.45
PTPRK-219ENST00000531050 TRIM26Q12899 539 aaPredicted RBP12.25□□□□□ -0.45
PTPRK-219ENST00000531050 CHIC1Q5VXU3 224 aa12.21□□□□□ -0.45
PTPRK-219ENST00000531050 ZCCHC6Q5VYS8 1495 aaKnown RBP12.2□□□□□ -0.46
PTPRK-219ENST00000531050 SUPT5HO00267 1087 aaKnown RBP12.14□□□□□ -0.47
PTPRK-219ENST00000531050 SHROOM4Q9ULL8 1493 aa12.14□□□□□ -0.47
PTPRK-219ENST00000531050 ANP32EQ9BTT0 268 aa12.05□□□□□ -0.48
PTPRK-219ENST00000531050 ERICH6Q7L0X2 663 aa12.01□□□□□ -0.49
PTPRK-219ENST00000531050 APLP2Q06481 763 aa11.99□□□□□ -0.49
PTPRK-219ENST00000531050 LOC105371045A0A1W2PR82 267 aa11.96□□□□□ -0.49
PTPRK-219ENST00000531050 CSRNP3Q8WYN3 585 aa11.95□□□□□ -0.5
PTPRK-219ENST00000531050 DIEXFQ68CQ4 756 aaKnown RBP11.92□□□□□ -0.5
PTPRK-219ENST00000531050 TSHZ2Q9NRE2 1034 aa11.78□□□□□ -0.52
PTPRK-219ENST00000531050 DCAF8L2P0C7V8 631 aa11.77□□□□□ -0.53
PTPRK-219ENST00000531050 YTHDC1Q96MU7 727 aaKnown RBP11.75□□□□□ -0.53
PTPRK-219ENST00000531050 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
PTPRK-219ENST00000531050 SUPT16HQ9Y5B9 1047 aaKnown RBP11.66□□□□□ -0.54
PTPRK-219ENST00000531050 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
PTPRK-219ENST00000531050 CCER1Q8TC90 406 aaPredicted RBP11.63□□□□□ -0.55
PTPRK-219ENST00000531050 CLSPNQ9HAW4 1339 aa11.61□□□□□ -0.55
PTPRK-219ENST00000531050 MIER1Q8N108 512 aa11.59□□□□□ -0.55
PTPRK-219ENST00000531050 ANO8Q9HCE9 1232 aaPredicted RBP11.58□□□□□ -0.56
PTPRK-219ENST00000531050 ZNF316A6NFI3 1004 aaPredicted RBP11.57□□□□□ -0.56
PTPRK-219ENST00000531050 ABCC9O60706 1549 aa11.53□□□□□ -0.56
PTPRK-219ENST00000531050 SCRIBQ14160 1630 aa11.48□□□□□ -0.57
PTPRK-219ENST00000531050 UBE2Q2Q8WVN8 375 aa11.43□□□□□ -0.58
PTPRK-219ENST00000531050 MSH5O43196 834 aa11.42□□□□□ -0.58
PTPRK-219ENST00000531050 RBM19Q9Y4C8 960 aaKnown RBP11.42□□□□□ -0.58
PTPRK-219ENST00000531050 SALL2Q9Y467 1007 aaPredicted RBP11.39□□□□□ -0.59
PTPRK-219ENST00000531050 NACADO15069 1562 aa11.36□□□□□ -0.59
PTPRK-219ENST00000531050 RSF1Q96T23 1441 aaPredicted RBP11.35□□□□□ -0.59
PTPRK-219ENST00000531050 DEKP35659 375 aaKnown RBP11.33□□□□□ -0.6
PTPRK-219ENST00000531050 MYT1LQ9UL68 1186 aa11.32□□□□□ -0.6
PTPRK-219ENST00000531050 CCDC136Q96JN2 1154 aa11.31□□□□□ -0.6
PTPRK-219ENST00000531050 ERICH6BQ5W0A0 696 aa11.3□□□□□ -0.6
PTPRK-219ENST00000531050 BCANQ96GW7 911 aa11.28□□□□□ -0.6
PTPRK-219ENST00000531050 RB1CC1Q8TDY2 1594 aa11.27□□□□□ -0.61
PTPRK-219ENST00000531050 FANCIQ9NVI1 1328 aa11.24□□□□□ -0.61
PTPRK-219ENST00000531050 EIF5BO60841 1220 aaKnown RBP11.24□□□□□ -0.61
PTPRK-219ENST00000531050 SLC24A1O60721 1099 aa11.23□□□□□ -0.61
PTPRK-219ENST00000531050 CECR2Q9BXF3 1484 aa11.2□□□□□ -0.62
PTPRK-219ENST00000531050 FKBP8Q14318 412 aa11.19□□□□□ -0.62
PTPRK-219ENST00000531050 MROH2BQ7Z745 1585 aa11.18□□□□□ -0.62
PTPRK-219ENST00000531050 EHMT2Q96KQ7 1210 aa11.17□□□□□ -0.62
PTPRK-219ENST00000531050 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.16□□□□□ -0.62
PTPRK-219ENST00000531050 WIZO95785 1651 aa11.13□□□□□ -0.63
PTPRK-219ENST00000531050 ITGAEP38570 1179 aa11.12□□□□□ -0.63
PTPRK-219ENST00000531050 PKNOX2Q96KN3 472 aa11.12□□□□□ -0.63
PTPRK-219ENST00000531050 IL27Q8NEV9 243 aa11.11□□□□□ -0.63
PTPRK-219ENST00000531050 BAZ1AQ9NRL2 1556 aaPredicted RBP11.1□□□□□ -0.63
PTPRK-219ENST00000531050 PLEKHG5O94827 1062 aa11.06□□□□□ -0.64
PTPRK-219ENST00000531050 UNC13AQ9UPW8 1703 aa11.05□□□□□ -0.64
PTPRK-219ENST00000531050 RTN4Q9NQC3 1192 aaKnown RBP11.05□□□□□ -0.64
PTPRK-219ENST00000531050 DAXXQ9UER7 740 aaPredicted RBP11.05□□□□□ -0.64
PTPRK-219ENST00000531050 KCNH8Q96L42 1107 aa11.04□□□□□ -0.64
PTPRK-219ENST00000531050 EIF4G1Q04637 1599 aaKnown RBP11.04□□□□□ -0.64
PTPRK-219ENST00000531050 WRNQ14191 1432 aaPredicted RBP eCLIP11.03□□□□□ -0.64
PTPRK-219ENST00000531050 NEFLP07196 543 aa11.03□□□□□ -0.64
PTPRK-219ENST00000531050 NBR1Q14596 966 aa11□□□□□ -0.65
PTPRK-219ENST00000531050 SMARCA4P51532 1647 aa11□□□□□ -0.65
PTPRK-219ENST00000531050 TOP2AP11388 1531 aaKnown RBP10.98□□□□□ -0.65
PTPRK-219ENST00000531050 CDK11AQ9UQ88 783 aaPredicted RBP10.97□□□□□ -0.65
PTPRK-219ENST00000531050 PODXL2Q9NZ53 605 aa10.95□□□□□ -0.66
PTPRK-219ENST00000531050 NOP58Q9Y2X3 529 aaKnown RBP10.95□□□□□ -0.66
PTPRK-219ENST00000531050 PAK3O75914 559 aaPredicted RBP10.94□□□□□ -0.66
PTPRK-219ENST00000531050 PHF23Q9BUL5 403 aaPredicted RBP10.92□□□□□ -0.66
PTPRK-219ENST00000531050 SMARCA2P51531 1590 aa10.91□□□□□ -0.66
PTPRK-219ENST00000531050 BICRAQ9NZM4 1560 aa10.89□□□□□ -0.67
PTPRK-219ENST00000531050 CCDC88BA6NC98 1476 aa10.88□□□□□ -0.67
PTPRK-219ENST00000531050 HNRNPUL2Q1KMD3 747 aaKnown RBP10.88□□□□□ -0.67
PTPRK-219ENST00000531050 C11orf95C9JLR9 678 aaPredicted RBP10.87□□□□□ -0.67
PTPRK-219ENST00000531050 RTL5Q5HYW3 569 aaPredicted RBP10.87□□□□□ -0.67
PTPRK-219ENST00000531050 ABCC8Q09428 1581 aa10.85□□□□□ -0.67
PTPRK-219ENST00000531050 WASHC2AQ641Q2 1341 aa10.85□□□□□ -0.67
PTPRK-219ENST00000531050 CEP162Q5TB80 1403 aa10.83□□□□□ -0.68
PTPRK-219ENST00000531050 ZMYND15Q9H091 742 aa10.82□□□□□ -0.68
PTPRK-219ENST00000531050 WASHC2CQ9Y4E1 1318 aa10.81□□□□□ -0.68
PTPRK-219ENST00000531050 TRIM52Q96A61 297 aa10.81□□□□□ -0.68
PTPRK-219ENST00000531050 PEG3Q9GZU2 1588 aa10.81□□□□□ -0.68
PTPRK-219ENST00000531050 TIMELESSQ9UNS1 1208 aa10.79□□□□□ -0.68
PTPRK-219ENST00000531050 IRX6P78412 446 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms