RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 IGF1RP08069 1367 aa41.56■■■■■ 4.24
CPSF1-202ENST00000527827 AEBP2Q6ZN18 517 aaPredicted RBP41.55■■■■■ 4.24
CPSF1-202ENST00000527827 KIF27Q86VH2 1401 aa41.52■■■■■ 4.24
CPSF1-202ENST00000527827 KIAA0586Q9BVV6 1533 aa41.49■■■■■ 4.23
CPSF1-202ENST00000527827 CUL7Q14999 1698 aa41.49■■■■■ 4.23
CPSF1-202ENST00000527827 ADCY10Q96PN6 1610 aa41.42■■■■■ 4.22
CPSF1-202ENST00000527827 MAPKBP1O60336 1514 aa41.39■■■■■ 4.22
CPSF1-202ENST00000527827 ABCC10Q5T3U5 1492 aa41.37■■■■■ 4.21
CPSF1-202ENST00000527827 NPM1P06748 294 aaKnown RBP eCLIP41.36■■■■■ 4.21
CPSF1-202ENST00000527827 FAM69CQ0P6D2 419 aa41.32■■■■■ 4.21
CPSF1-202ENST00000527827 DIP2BQ9P265 1576 aa41.28■■■■■ 4.2
CPSF1-202ENST00000527827 CARMIL1Q5VZK9 1371 aa41.26■■■■■ 4.2
CPSF1-202ENST00000527827 PTPRGP23470 1445 aa41.13■■■■■ 4.17
CPSF1-202ENST00000527827 IQGAP2Q13576 1575 aa41.06■■■■■ 4.16
CPSF1-202ENST00000527827 CARMIL2Q6F5E8 1435 aa41.05■■■■■ 4.16
CPSF1-202ENST00000527827 TNIKQ9UKE5 1360 aa41.04■■■■■ 4.16
CPSF1-202ENST00000527827 TTBK1Q5TCY1 1321 aaPredicted RBP41.01■■■■■ 4.16
CPSF1-202ENST00000527827 TSPOAP1O95153 1857 aa41.01■■■■■ 4.16
CPSF1-202ENST00000527827 ABCC2Q92887 1545 aa40.96■■■■■ 4.15
CPSF1-202ENST00000527827 KDM6BO15054 1643 aa40.96■■■■■ 4.15
CPSF1-202ENST00000527827 DISP1Q96F81 1524 aa40.91■■■■■ 4.14
CPSF1-202ENST00000527827 UHRF1BP1LA0JNW5 1464 aa40.88■■■■■ 4.13
CPSF1-202ENST00000527827 RAPGEF2Q9Y4G8 1499 aa40.86■■■■■ 4.13
CPSF1-202ENST00000527827 ASXL2Q76L83 1435 aa40.84■■■■■ 4.13
CPSF1-202ENST00000527827 UACAQ9BZF9 1416 aa40.82■■■■■ 4.12
CPSF1-202ENST00000527827 PLB1Q6P1J6 1458 aa40.81■■■■■ 4.12
CPSF1-202ENST00000527827 UGGT2Q9NYU1 1516 aa40.81■■■■■ 4.12
CPSF1-202ENST00000527827 GLI2P10070 1586 aa40.78■■■■■ 4.12
CPSF1-202ENST00000527827 PPRC1Q5VV67 1664 aaKnown RBP40.75■■■■■ 4.11
CPSF1-202ENST00000527827 KIAA0556O60303 1618 aa40.71■■■■■ 4.11
CPSF1-202ENST00000527827 KDM5BQ9UGL1 1544 aa40.69■■■■■ 4.1
CPSF1-202ENST00000527827 KDM4FA0A1W2PPD8 638 aa40.66■■■■■ 4.1
CPSF1-202ENST00000527827 ZCCHC11Q5TAX3 1644 aaKnown RBP40.62■■■■■ 4.09
CPSF1-202ENST00000527827 EPRSP07814 1512 aaKnown RBP40.6■■■■■ 4.09
CPSF1-202ENST00000527827 CTTNBP2Q8WZ74 1663 aa40.58■■■■■ 4.09
CPSF1-202ENST00000527827 MAP3K4Q9Y6R4 1608 aa40.56■■■■■ 4.08
CPSF1-202ENST00000527827 COL17A1Q9UMD9 1497 aaPredicted RBP40.46■■■■■ 4.07
CPSF1-202ENST00000527827 GOLGA3Q08378 1498 aa40.41■■■■■ 4.06
CPSF1-202ENST00000527827 PRXQ9BXM0 1461 aa40.41■■■■■ 4.06
CPSF1-202ENST00000527827 TEX14Q8IWB6 1497 aa40.4■■■■■ 4.06
CPSF1-202ENST00000527827 WDR7Q9Y4E6 1490 aa40.39■■■■■ 4.06
CPSF1-202ENST00000527827 ABCA8O94911 1581 aa40.36■■■■■ 4.05
CPSF1-202ENST00000527827 ADGRL1O94910 1474 aa40.28■■■■■ 4.04
CPSF1-202ENST00000527827 CFAP43Q8NDM7 1665 aa40.21■■■■■ 4.03
CPSF1-202ENST00000527827 CD109Q6YHK3 1445 aa40.17■■■■■ 4.02
CPSF1-202ENST00000527827 MAGI3Q5TCQ9 1506 aa40.17■■■■■ 4.02
CPSF1-202ENST00000527827 KCNH8Q96L42 1107 aa40.17■■■■■ 4.02
CPSF1-202ENST00000527827 P3H3Q8IVL6 736 aa40.06■■■■■ 4
CPSF1-202ENST00000527827 ATP10BO94823 1461 aa40.02■■■■■ 4
CPSF1-202ENST00000527827 CSRNP3Q8WYN3 585 aa40.01■■■■■ 4
CPSF1-202ENST00000527827 SAMD9Q5K651 1589 aa39.99■■■■□ 3.99
CPSF1-202ENST00000527827 ARID3CA6NKF2 412 aa39.99■■■■□ 3.99
CPSF1-202ENST00000527827 FAM9AQ8IZU1 332 aaPredicted RBP39.95■■■■□ 3.99
CPSF1-202ENST00000527827 RAPGEF6Q8TEU7 1601 aa39.87■■■■□ 3.97
CPSF1-202ENST00000527827 ARAP3Q8WWN8 1544 aa39.87■■■■□ 3.97
CPSF1-202ENST00000527827 ABCA9Q8IUA7 1624 aa39.87■■■■□ 3.97
CPSF1-202ENST00000527827 KIF21BO75037 1637 aa39.81■■■■□ 3.96
CPSF1-202ENST00000527827 HECW2Q9P2P5 1572 aa39.8■■■■□ 3.96
CPSF1-202ENST00000527827 EEA1Q15075 1411 aa39.78■■■■□ 3.96
CPSF1-202ENST00000527827 NUP153P49790 1475 aaKnown RBP39.73■■■■□ 3.95
CPSF1-202ENST00000527827 PHLDB1Q86UU1 1377 aa39.72■■■■□ 3.95
CPSF1-202ENST00000527827 FHOD3Q2V2M9 1422 aa39.68■■■■□ 3.94
CPSF1-202ENST00000527827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.68■■■■□ 3.94
CPSF1-202ENST00000527827 RANGAP1P46060 587 aaPredicted RBP39.68■■■■□ 3.94
CPSF1-202ENST00000527827 HNRNPUL2Q1KMD3 747 aaKnown RBP39.68■■■■□ 3.94
CPSF1-202ENST00000527827 NEO1Q92859 1461 aa39.65■■■■□ 3.94
CPSF1-202ENST00000527827 RAPGEF3O95398 923 aa39.62■■■■□ 3.93
CPSF1-202ENST00000527827 ILDR1Q86SU0 546 aaPredicted RBP39.62■■■■□ 3.93
CPSF1-202ENST00000527827 FRMPD1Q5SYB0 1578 aa39.56■■■■□ 3.92
CPSF1-202ENST00000527827 ADAMTSL3P82987 1691 aa39.51■■■■□ 3.92
CPSF1-202ENST00000527827 EFCAB5A4FU69 1503 aa39.5■■■■□ 3.91
CPSF1-202ENST00000527827 PLEKHD1A6NEE1 506 aa39.48■■■■□ 3.91
CPSF1-202ENST00000527827 PTPRMP28827 1452 aa39.42■■■■□ 3.9
CPSF1-202ENST00000527827 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.41■■■■□ 3.9
CPSF1-202ENST00000527827 BCORL1Q5H9F3 1711 aa39.4■■■■□ 3.9
CPSF1-202ENST00000527827 RICTORQ6R327 1708 aa39.39■■■■□ 3.9
CPSF1-202ENST00000527827 AKNAQ7Z591 1439 aa39.37■■■■□ 3.89
CPSF1-202ENST00000527827 DENND4BO75064 1496 aaPredicted RBP39.37■■■■□ 3.89
CPSF1-202ENST00000527827 TTC37Q6PGP7 1564 aa39.36■■■■□ 3.89
CPSF1-202ENST00000527827 FANCAO15360 1455 aa39.35■■■■□ 3.89
CPSF1-202ENST00000527827 CFAP74Q9C0B2 1584 aa39.34■■■■□ 3.89
CPSF1-202ENST00000527827 ARHGEF40Q8TER5 1519 aa39.34■■■■□ 3.89
CPSF1-202ENST00000527827 CDK13Q14004 1512 aaKnown RBP39.32■■■■□ 3.89
CPSF1-202ENST00000527827 MADDQ8WXG6 1647 aa39.31■■■■□ 3.88
CPSF1-202ENST00000527827 ARID4BQ4LE39 1312 aaPredicted RBP39.3■■■■□ 3.88
CPSF1-202ENST00000527827 ZMYM4Q5VZL5 1548 aa39.22■■■■□ 3.87
CPSF1-202ENST00000527827 EHMT2Q96KQ7 1210 aa39.2■■■■□ 3.87
CPSF1-202ENST00000527827 UBTFP17480 764 aaKnown RBP39.19■■■■□ 3.86
CPSF1-202ENST00000527827 ARHGAP35Q9NRY4 1499 aa39.16■■■■□ 3.86
CPSF1-202ENST00000527827 RIMS1Q86UR5 1692 aaKnown RBP39.16■■■■□ 3.86
CPSF1-202ENST00000527827 PLCH2O75038 1416 aa39.14■■■■□ 3.86
CPSF1-202ENST00000527827 FMN1Q68DA7 1419 aa39.14■■■■□ 3.86
CPSF1-202ENST00000527827 SIGLEC1Q9BZZ2 1709 aa39.14■■■■□ 3.86
CPSF1-202ENST00000527827 HECW1Q76N89 1606 aa39.14■■■■□ 3.86
CPSF1-202ENST00000527827 ZFYVE16Q7Z3T8 1539 aa39.14■■■■□ 3.86
CPSF1-202ENST00000527827 YEATS2Q9ULM3 1422 aa39.14■■■■□ 3.86
CPSF1-202ENST00000527827 PCF11O94913 1555 aaKnown RBP39.11■■■■□ 3.85
CPSF1-202ENST00000527827 MAGI2Q86UL8 1455 aa39.1■■■■□ 3.85
CPSF1-202ENST00000527827 CHIC1Q5VXU3 224 aa39.08■■■■□ 3.85
CPSF1-202ENST00000527827 ATP1B4Q9UN42 357 aaPredicted RBP39.08■■■■□ 3.85
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms