RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	FAM9A	Q8IZU1	332 aa	Predicted RBP	34.38	■■■■□ 3.09
CD44-222	ENST00000526025	CTTNBP2	Q8WZ74	1663 aa		34.32	■■■■□ 3.08
CD44-222	ENST00000526025	ARHGEF11	O15085	1522 aa		34.28	■■■■□ 3.08
CD44-222	ENST00000526025	IQGAP2	Q13576	1575 aa		34.28	■■■■□ 3.08
CD44-222	ENST00000526025	RIMBP3C	A6NJZ7	1639 aa		34.24	■■■■□ 3.07
CD44-222	ENST00000526025	RIMBP3B	A6NNM3	1639 aa		34.24	■■■■□ 3.07
CD44-222	ENST00000526025	RIMBP3	Q9UFD9	1639 aa		34.24	■■■■□ 3.07
CD44-222	ENST00000526025	GOLGA3	Q08378	1498 aa		34.19	■■■■□ 3.06
CD44-222	ENST00000526025	JPH4	Q96JJ6	628 aa		34.18	■■■■□ 3.06
CD44-222	ENST00000526025	UGGT2	Q9NYU1	1516 aa		34.13	■■■■□ 3.05
CD44-222	ENST00000526025	PRG4	Q92954	1404 aa	Predicted RBP	34.11	■■■■□ 3.05
CD44-222	ENST00000526025	ERCC6L2	Q5T890	1561 aa		34.07	■■■■□ 3.05
CD44-222	ENST00000526025	ARAP1	Q96P48	1450 aa		34.01	■■■■□ 3.04
CD44-222	ENST00000526025	CARMIL2	Q6F5E8	1435 aa		34	■■■■□ 3.03
CD44-222	ENST00000526025	DISP1	Q96F81	1524 aa		33.97	■■■■□ 3.03
CD44-222	ENST00000526025	KIAA0556	O60303	1618 aa		33.94	■■■■□ 3.02
CD44-222	ENST00000526025	UBTF	P17480	764 aa	Known RBP	33.92	■■■■□ 3.02
CD44-222	ENST00000526025	SAMD9	Q5K651	1589 aa		33.89	■■■■□ 3.02
CD44-222	ENST00000526025	TNIK	Q9UKE5	1360 aa		33.85	■■■■□ 3.01
CD44-222	ENST00000526025	EFCAB5	A4FU69	1503 aa		33.84	■■■■□ 3.01
CD44-222	ENST00000526025	CYB5RL	Q6IPT4	315 aa		33.8	■■■■□ 3
CD44-222	ENST00000526025	EHMT2	Q96KQ7	1210 aa		33.8	■■■■□ 3
CD44-222	ENST00000526025	PTPRG	P23470	1445 aa		33.76	■■■□□ 2.99
CD44-222	ENST00000526025	ARHGAP35	Q9NRY4	1499 aa		33.63	■■■□□ 2.97
CD44-222	ENST00000526025	UHRF1BP1L	A0JNW5	1464 aa		33.6	■■■□□ 2.97
CD44-222	ENST00000526025	ADCY10	Q96PN6	1610 aa		33.6	■■■□□ 2.97
CD44-222	ENST00000526025	UACA	Q9BZF9	1416 aa		33.58	■■■□□ 2.97
CD44-222	ENST00000526025	FHOD3	Q2V2M9	1422 aa		33.57	■■■□□ 2.96
CD44-222	ENST00000526025	RANGAP1	P46060	587 aa	Predicted RBP	33.57	■■■□□ 2.96
CD44-222	ENST00000526025	LOC105371045	A0A1W2PR82	267 aa		33.56	■■■□□ 2.96
CD44-222	ENST00000526025	ABCA8	O94911	1581 aa		33.55	■■■□□ 2.96
CD44-222	ENST00000526025	ABCC2	Q92887	1545 aa		33.55	■■■□□ 2.96
CD44-222	ENST00000526025	P3H3	Q8IVL6	736 aa		33.54	■■■□□ 2.96
CD44-222	ENST00000526025	CLIP1	P30622	1438 aa		33.53	■■■□□ 2.96
CD44-222	ENST00000526025	CEP162	Q5TB80	1403 aa		33.49	■■■□□ 2.95
CD44-222	ENST00000526025	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.49	■■■□□ 2.95
CD44-222	ENST00000526025	PLB1	Q6P1J6	1458 aa		33.48	■■■□□ 2.95
CD44-222	ENST00000526025	FMN1	Q68DA7	1419 aa		33.46	■■■□□ 2.95
CD44-222	ENST00000526025	RAPGEF6	Q8TEU7	1601 aa		33.45	■■■□□ 2.95
CD44-222	ENST00000526025	KDM5B	Q9UGL1	1544 aa		33.41	■■■□□ 2.94
CD44-222	ENST00000526025	MAPKBP1	O60336	1514 aa		33.37	■■■□□ 2.93
CD44-222	ENST00000526025	NPM1	P06748	294 aa	Known RBP eCLIP	33.36	■■■□□ 2.93
CD44-222	ENST00000526025	ZCCHC11	Q5TAX3	1644 aa	Known RBP	33.33	■■■□□ 2.93
CD44-222	ENST00000526025	NUP153	P49790	1475 aa	Known RBP	33.29	■■■□□ 2.92
CD44-222	ENST00000526025	HECW1	Q76N89	1606 aa		33.28	■■■□□ 2.92
CD44-222	ENST00000526025	CASKIN1	Q8WXD9	1431 aa		33.23	■■■□□ 2.91
CD44-222	ENST00000526025	PCF11	O94913	1555 aa	Known RBP	33.21	■■■□□ 2.91
CD44-222	ENST00000526025	ATP10B	O94823	1461 aa		33.21	■■■□□ 2.91
CD44-222	ENST00000526025	FYCO1	Q9BQS8	1478 aa		33.2	■■■□□ 2.91
CD44-222	ENST00000526025	ASXL2	Q76L83	1435 aa		33.16	■■■□□ 2.9
CD44-222	ENST00000526025	EPRS	P07814	1512 aa	Known RBP	33.13	■■■□□ 2.89
CD44-222	ENST00000526025	LRRIQ1	Q96JM4	1722 aa		33.12	■■■□□ 2.89
CD44-222	ENST00000526025	ABCC10	Q5T3U5	1492 aa		33.1	■■■□□ 2.89
CD44-222	ENST00000526025	CCDC18	Q5T9S5	1454 aa		33.1	■■■□□ 2.89
CD44-222	ENST00000526025	WDR7	Q9Y4E6	1490 aa		33.1	■■■□□ 2.89
CD44-222	ENST00000526025	VPS8	Q8N3P4	1428 aa		33.1	■■■□□ 2.89
CD44-222	ENST00000526025	KIF13A	Q9H1H9	1805 aa		33.08	■■■□□ 2.89
CD44-222	ENST00000526025	DIP2B	Q9P265	1576 aa		33.08	■■■□□ 2.89
CD44-222	ENST00000526025	CDK13	Q14004	1512 aa	Known RBP	33.05	■■■□□ 2.88
CD44-222	ENST00000526025	GLI2	P10070	1586 aa		33.03	■■■□□ 2.88
CD44-222	ENST00000526025	ARID3C	A6NKF2	412 aa		33.01	■■■□□ 2.87
CD44-222	ENST00000526025	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.99	■■■□□ 2.87
CD44-222	ENST00000526025	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.96	■■■□□ 2.87
CD44-222	ENST00000526025	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.96	■■■□□ 2.87
CD44-222	ENST00000526025	TRH	P20396	242 aa	Predicted RBP	32.94	■■■□□ 2.86
CD44-222	ENST00000526025	PLEKHD1	A6NEE1	506 aa		32.93	■■■□□ 2.86
CD44-222	ENST00000526025	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.93	■■■□□ 2.86
CD44-222	ENST00000526025	CFAP43	Q8NDM7	1665 aa		32.89	■■■□□ 2.86
CD44-222	ENST00000526025	FAM69C	Q0P6D2	419 aa		32.89	■■■□□ 2.86
CD44-222	ENST00000526025	MAP3K4	Q9Y6R4	1608 aa		32.88	■■■□□ 2.85
CD44-222	ENST00000526025	ABCA9	Q8IUA7	1624 aa		32.86	■■■□□ 2.85
CD44-222	ENST00000526025	MAP3K1	Q13233	1512 aa		32.86	■■■□□ 2.85
CD44-222	ENST00000526025	TRO	Q12816	1431 aa	Predicted RBP	32.85	■■■□□ 2.85
CD44-222	ENST00000526025	TIAM1	Q13009	1591 aa		32.82	■■■□□ 2.84
CD44-222	ENST00000526025	MAGI3	Q5TCQ9	1506 aa		32.8	■■■□□ 2.84
CD44-222	ENST00000526025	KCNH8	Q96L42	1107 aa		32.79	■■■□□ 2.84
CD44-222	ENST00000526025	KIF14	Q15058	1648 aa		32.79	■■■□□ 2.84
CD44-222	ENST00000526025	EHBP1L1	Q8N3D4	1523 aa		32.74	■■■□□ 2.83
CD44-222	ENST00000526025	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.74	■■■□□ 2.83
CD44-222	ENST00000526025	PPRC1	Q5VV67	1664 aa	Known RBP	32.74	■■■□□ 2.83
CD44-222	ENST00000526025	TSPOAP1	O95153	1857 aa		32.74	■■■□□ 2.83
CD44-222	ENST00000526025	CD109	Q6YHK3	1445 aa		32.7	■■■□□ 2.83
CD44-222	ENST00000526025	TTC37	Q6PGP7	1564 aa		32.7	■■■□□ 2.82
CD44-222	ENST00000526025	MTUS2	Q5JR59	1369 aa		32.69	■■■□□ 2.82
CD44-222	ENST00000526025	TEX14	Q8IWB6	1497 aa		32.67	■■■□□ 2.82
CD44-222	ENST00000526025	LRRC9	Q6ZRR7	1453 aa		32.64	■■■□□ 2.82
CD44-222	ENST00000526025	MYO5C	Q9NQX4	1742 aa		32.64	■■■□□ 2.82
CD44-222	ENST00000526025	ARAP3	Q8WWN8	1544 aa		32.62	■■■□□ 2.81
CD44-222	ENST00000526025	APLP2	Q06481	763 aa		32.62	■■■□□ 2.81
CD44-222	ENST00000526025	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.6	■■■□□ 2.81
CD44-222	ENST00000526025	CFAP74	Q9C0B2	1584 aa		32.56	■■■□□ 2.8
CD44-222	ENST00000526025	PLCH2	O75038	1416 aa		32.55	■■■□□ 2.8
CD44-222	ENST00000526025	PREX2	Q70Z35	1606 aa		32.54	■■■□□ 2.8
CD44-222	ENST00000526025	CDC42BPA	Q5VT25	1732 aa		32.54	■■■□□ 2.8
CD44-222	ENST00000526025	NEO1	Q92859	1461 aa		32.53	■■■□□ 2.8
CD44-222	ENST00000526025	PHLDB1	Q86UU1	1377 aa		32.52	■■■□□ 2.8
CD44-222	ENST00000526025	CDC42BPB	Q9Y5S2	1711 aa		32.5	■■■□□ 2.79
CD44-222	ENST00000526025	NCOA2	Q15596	1464 aa		32.48	■■■□□ 2.79
CD44-222	ENST00000526025	ITSN2	Q9NZM3	1697 aa		32.48	■■■□□ 2.79
CD44-222	ENST00000526025	KANK4	Q5T7N3	995 aa	Predicted RBP	32.47	■■■□□ 2.79

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