RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 IGF1RP08069 1367 aa11.53□□□□□ -0.56
CD44-221ENST00000526000 BIVM-ERCC5R4GMW8 1640 aa11.53□□□□□ -0.56
CD44-221ENST00000526000 SHROOM2Q13796 1616 aa11.5□□□□□ -0.57
CD44-221ENST00000526000 KDM4FA0A1W2PPD8 638 aa11.47□□□□□ -0.57
CD44-221ENST00000526000 ABCC10Q5T3U5 1492 aa11.46□□□□□ -0.57
CD44-221ENST00000526000 PTPRGP23470 1445 aa11.46□□□□□ -0.57
CD44-221ENST00000526000 KIF27Q86VH2 1401 aa11.46□□□□□ -0.57
CD44-221ENST00000526000 CARMIL1Q5VZK9 1371 aa11.46□□□□□ -0.57
CD44-221ENST00000526000 KIAA0586Q9BVV6 1533 aa11.45□□□□□ -0.58
CD44-221ENST00000526000 KIF13AQ9H1H9 1805 aa11.42□□□□□ -0.58
CD44-221ENST00000526000 RUSC2Q8N2Y8 1516 aa11.41□□□□□ -0.58
CD44-221ENST00000526000 ADCY10Q96PN6 1610 aa11.4□□□□□ -0.58
CD44-221ENST00000526000 TNIKQ9UKE5 1360 aa11.39□□□□□ -0.59
CD44-221ENST00000526000 TSPOAP1O95153 1857 aa11.37□□□□□ -0.59
CD44-221ENST00000526000 CARMIL2Q6F5E8 1435 aa11.36□□□□□ -0.59
CD44-221ENST00000526000 DIP2BQ9P265 1576 aa11.36□□□□□ -0.59
CD44-221ENST00000526000 MAPKBP1O60336 1514 aa11.35□□□□□ -0.59
CD44-221ENST00000526000 KCNH8Q96L42 1107 aa11.35□□□□□ -0.59
CD44-221ENST00000526000 ASXL2Q76L83 1435 aa11.35□□□□□ -0.59
CD44-221ENST00000526000 ARID3CA6NKF2 412 aa11.33□□□□□ -0.6
CD44-221ENST00000526000 KDM6BO15054 1643 aa11.32□□□□□ -0.6
CD44-221ENST00000526000 P3H3Q8IVL6 736 aa11.31□□□□□ -0.6
CD44-221ENST00000526000 UACAQ9BZF9 1416 aa11.31□□□□□ -0.6
CD44-221ENST00000526000 ABCC2Q92887 1545 aa11.3□□□□□ -0.6
CD44-221ENST00000526000 ILDR1Q86SU0 546 aaPredicted RBP11.29□□□□□ -0.6
CD44-221ENST00000526000 PLB1Q6P1J6 1458 aa11.29□□□□□ -0.6
CD44-221ENST00000526000 CUL7Q14999 1698 aa11.29□□□□□ -0.6
CD44-221ENST00000526000 COL17A1Q9UMD9 1497 aaPredicted RBP11.28□□□□□ -0.6
CD44-221ENST00000526000 DISP1Q96F81 1524 aa11.27□□□□□ -0.61
CD44-221ENST00000526000 RAPGEF2Q9Y4G8 1499 aa11.26□□□□□ -0.61
CD44-221ENST00000526000 IQGAP2Q13576 1575 aa11.26□□□□□ -0.61
CD44-221ENST00000526000 RANGAP1P46060 587 aaPredicted RBP11.26□□□□□ -0.61
CD44-221ENST00000526000 UHRF1BP1LA0JNW5 1464 aa11.24□□□□□ -0.61
CD44-221ENST00000526000 EPRSP07814 1512 aaKnown RBP11.24□□□□□ -0.61
CD44-221ENST00000526000 ADGRL1O94910 1474 aa11.22□□□□□ -0.61
CD44-221ENST00000526000 KDM5BQ9UGL1 1544 aa11.2□□□□□ -0.62
CD44-221ENST00000526000 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.2□□□□□ -0.62
CD44-221ENST00000526000 HNRNPUL2Q1KMD3 747 aaKnown RBP11.2□□□□□ -0.62
CD44-221ENST00000526000 GLI2P10070 1586 aa11.2□□□□□ -0.62
CD44-221ENST00000526000 UGGT2Q9NYU1 1516 aa11.19□□□□□ -0.62
CD44-221ENST00000526000 CD109Q6YHK3 1445 aa11.18□□□□□ -0.62
CD44-221ENST00000526000 FAM9AQ8IZU1 332 aaPredicted RBP11.18□□□□□ -0.62
CD44-221ENST00000526000 PPRC1Q5VV67 1664 aaKnown RBP11.17□□□□□ -0.62
CD44-221ENST00000526000 EHMT2Q96KQ7 1210 aa11.16□□□□□ -0.62
CD44-221ENST00000526000 WDR7Q9Y4E6 1490 aa11.16□□□□□ -0.62
CD44-221ENST00000526000 ZCCHC11Q5TAX3 1644 aaKnown RBP11.16□□□□□ -0.62
CD44-221ENST00000526000 TEX14Q8IWB6 1497 aa11.15□□□□□ -0.62
CD44-221ENST00000526000 KIAA0556O60303 1618 aa11.15□□□□□ -0.62
CD44-221ENST00000526000 RAPGEF3O95398 923 aa11.13□□□□□ -0.63
CD44-221ENST00000526000 PLPPR3Q6T4P5 718 aa11.13□□□□□ -0.63
CD44-221ENST00000526000 CSRNP3Q8WYN3 585 aa11.13□□□□□ -0.63
CD44-221ENST00000526000 MAP3K4Q9Y6R4 1608 aa11.11□□□□□ -0.63
CD44-221ENST00000526000 GOLGA3Q08378 1498 aa11.11□□□□□ -0.63
CD44-221ENST00000526000 ARID4BQ4LE39 1312 aaPredicted RBP11.1□□□□□ -0.63
CD44-221ENST00000526000 ATP10BO94823 1461 aa11.09□□□□□ -0.63
CD44-221ENST00000526000 PRXQ9BXM0 1461 aa11.08□□□□□ -0.64
CD44-221ENST00000526000 ABCA8O94911 1581 aa11.07□□□□□ -0.64
CD44-221ENST00000526000 MAGI3Q5TCQ9 1506 aa11.07□□□□□ -0.64
CD44-221ENST00000526000 ATP1B4Q9UN42 357 aaPredicted RBP11.06□□□□□ -0.64
CD44-221ENST00000526000 HECW2Q9P2P5 1572 aa11.06□□□□□ -0.64
CD44-221ENST00000526000 PLEKHD1A6NEE1 506 aa11.05□□□□□ -0.64
CD44-221ENST00000526000 MLECQ14165 292 aa11.03□□□□□ -0.64
CD44-221ENST00000526000 CTTNBP2Q8WZ74 1663 aa11.01□□□□□ -0.65
CD44-221ENST00000526000 FHOD3Q2V2M9 1422 aa11.01□□□□□ -0.65
CD44-221ENST00000526000 HSPA2P54652 639 aa11□□□□□ -0.65
CD44-221ENST00000526000 CFAP43Q8NDM7 1665 aa10.99□□□□□ -0.65
CD44-221ENST00000526000 ARAP3Q8WWN8 1544 aa10.99□□□□□ -0.65
CD44-221ENST00000526000 KIF21BO75037 1637 aa10.98□□□□□ -0.65
CD44-221ENST00000526000 UBTFP17480 764 aaKnown RBP10.98□□□□□ -0.65
CD44-221ENST00000526000 FBXO41Q8TF61 875 aa10.97□□□□□ -0.65
CD44-221ENST00000526000 PHLDB1Q86UU1 1377 aa10.97□□□□□ -0.65
CD44-221ENST00000526000 PTPRMP28827 1452 aa10.96□□□□□ -0.65
CD44-221ENST00000526000 NUP153P49790 1475 aaKnown RBP10.94□□□□□ -0.66
CD44-221ENST00000526000 MYT1LQ9UL68 1186 aa10.94□□□□□ -0.66
CD44-221ENST00000526000 AKNAQ7Z591 1439 aa10.93□□□□□ -0.66
CD44-221ENST00000526000 DENND4BO75064 1496 aaPredicted RBP10.93□□□□□ -0.66
CD44-221ENST00000526000 NEO1Q92859 1461 aa10.93□□□□□ -0.66
CD44-221ENST00000526000 RAPGEF6Q8TEU7 1601 aa10.92□□□□□ -0.66
CD44-221ENST00000526000 CEBPAP49715 358 aaPredicted RBP10.92□□□□□ -0.66
CD44-221ENST00000526000 ABCA9Q8IUA7 1624 aa10.91□□□□□ -0.66
CD44-221ENST00000526000 YEATS2Q9ULM3 1422 aa10.9□□□□□ -0.66
CD44-221ENST00000526000 SAMD9Q5K651 1589 aa10.9□□□□□ -0.67
CD44-221ENST00000526000 FANCAO15360 1455 aa10.88□□□□□ -0.67
CD44-221ENST00000526000 EFCAB2Q5VUJ9 269 aa10.88□□□□□ -0.67
CD44-221ENST00000526000 SCAPERQ9BY12 1400 aa10.88□□□□□ -0.67
CD44-221ENST00000526000 ADAMTSL3P82987 1691 aa10.88□□□□□ -0.67
CD44-221ENST00000526000 AFAP1Q8N556 730 aa10.87□□□□□ -0.67
CD44-221ENST00000526000 CDK13Q14004 1512 aaKnown RBP10.87□□□□□ -0.67
CD44-221ENST00000526000 EEA1Q15075 1411 aa10.86□□□□□ -0.67
CD44-221ENST00000526000 MADDQ8WXG6 1647 aa10.86□□□□□ -0.67
CD44-221ENST00000526000 FRMPD1Q5SYB0 1578 aa10.86□□□□□ -0.67
CD44-221ENST00000526000 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.85□□□□□ -0.67
CD44-221ENST00000526000 CHIC1Q5VXU3 224 aa10.85□□□□□ -0.67
CD44-221ENST00000526000 CDK11AQ9UQ88 783 aaPredicted RBP10.85□□□□□ -0.67
CD44-221ENST00000526000 CERKQ8TCT0 537 aa10.84□□□□□ -0.67
CD44-221ENST00000526000 BCORL1Q5H9F3 1711 aa10.84□□□□□ -0.67
CD44-221ENST00000526000 POGZQ7Z3K3 1410 aa10.84□□□□□ -0.67
CD44-221ENST00000526000 LMTK3Q96Q04 1460 aa10.83□□□□□ -0.68
CD44-221ENST00000526000 PLCH2O75038 1416 aa10.83□□□□□ -0.68
CD44-221ENST00000526000 RIMS1Q86UR5 1692 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms