RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 NISCHQ9Y2I1 1504 aa16.35■□□□□ 0.21
CD44-221ENST00000526000 ABCC9O60706 1549 aa14.98□□□□□ -0.01
CD44-221ENST00000526000 CCDC180Q9P1Z9 1646 aa14.54□□□□□ -0.08
CD44-221ENST00000526000 DNAJC5BQ9UF47 199 aa14.29□□□□□ -0.12
CD44-221ENST00000526000 DCAF8L2P0C7V8 631 aa14.24□□□□□ -0.13
CD44-221ENST00000526000 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
CD44-221ENST00000526000 RB1CC1Q8TDY2 1594 aa14.02□□□□□ -0.16
CD44-221ENST00000526000 NACADO15069 1562 aa13.88□□□□□ -0.19
CD44-221ENST00000526000 BICRAQ9NZM4 1560 aa13.64□□□□□ -0.23
CD44-221ENST00000526000 UNC13AQ9UPW8 1703 aa13.63□□□□□ -0.23
CD44-221ENST00000526000 MYO15BQ96JP2 1530 aa13.57□□□□□ -0.24
CD44-221ENST00000526000 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
CD44-221ENST00000526000 CECR2Q9BXF3 1484 aa13.45□□□□□ -0.26
CD44-221ENST00000526000 SCRIBQ14160 1630 aa13.45□□□□□ -0.26
CD44-221ENST00000526000 CC2D2AQ9P2K1 1620 aa13.4□□□□□ -0.26
CD44-221ENST00000526000 DCAF1Q9Y4B6 1507 aa13.37□□□□□ -0.27
CD44-221ENST00000526000 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
CD44-221ENST00000526000 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
CD44-221ENST00000526000 DNAJC5Q9H3Z4 198 aa13.13□□□□□ -0.31
CD44-221ENST00000526000 ERCC6Q03468 1493 aa12.91□□□□□ -0.34
CD44-221ENST00000526000 NCAPD3P42695 1498 aa12.89□□□□□ -0.35
CD44-221ENST00000526000 ATAD2BQ9ULI0 1458 aa12.86□□□□□ -0.35
CD44-221ENST00000526000 NESP48681 1621 aa12.83□□□□□ -0.36
CD44-221ENST00000526000 CUX2O14529 1486 aa12.8□□□□□ -0.36
CD44-221ENST00000526000 SMARCA4P51532 1647 aa12.74□□□□□ -0.37
CD44-221ENST00000526000 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
CD44-221ENST00000526000 BAZ1BQ9UIG0 1483 aaKnown RBP12.72□□□□□ -0.37
CD44-221ENST00000526000 HMGXB3Q12766 1538 aa12.67□□□□□ -0.38
CD44-221ENST00000526000 MROH2BQ7Z745 1585 aa12.66□□□□□ -0.38
CD44-221ENST00000526000 BAZ1AQ9NRL2 1556 aaPredicted RBP12.65□□□□□ -0.38
CD44-221ENST00000526000 TRIM41Q8WV44 630 aa12.65□□□□□ -0.38
CD44-221ENST00000526000 PDS5BQ9NTI5 1447 aa12.58□□□□□ -0.4
CD44-221ENST00000526000 CADPSQ9ULU8 1353 aa12.56□□□□□ -0.4
CD44-221ENST00000526000 LAMC3Q9Y6N6 1575 aa12.54□□□□□ -0.4
CD44-221ENST00000526000 THOC2Q8NI27 1593 aaKnown RBP12.53□□□□□ -0.4
CD44-221ENST00000526000 PEG3Q9GZU2 1588 aa12.53□□□□□ -0.4
CD44-221ENST00000526000 KIF21AQ7Z4S6 1674 aa12.5□□□□□ -0.41
CD44-221ENST00000526000 WIZO95785 1651 aa12.47□□□□□ -0.41
CD44-221ENST00000526000 MRC2Q9UBG0 1479 aa12.46□□□□□ -0.42
CD44-221ENST00000526000 OSCARQ8IYS5 282 aa12.41□□□□□ -0.42
CD44-221ENST00000526000 FANCD2Q9BXW9 1451 aa12.4□□□□□ -0.43
CD44-221ENST00000526000 CEP164Q9UPV0 1460 aa12.39□□□□□ -0.43
CD44-221ENST00000526000 RSF1Q96T23 1441 aaPredicted RBP12.38□□□□□ -0.43
CD44-221ENST00000526000 WDR62O43379 1518 aa12.36□□□□□ -0.43
CD44-221ENST00000526000 CFTRP13569 1480 aa12.32□□□□□ -0.44
CD44-221ENST00000526000 URB2Q14146 1524 aaKnown RBP12.29□□□□□ -0.44
CD44-221ENST00000526000 TOP2AP11388 1531 aaKnown RBP12.25□□□□□ -0.45
CD44-221ENST00000526000 CCDC88BA6NC98 1476 aa12.22□□□□□ -0.45
CD44-221ENST00000526000 FBLN2P98095 1184 aa12.21□□□□□ -0.45
CD44-221ENST00000526000 ZNF608Q9ULD9 1512 aaPredicted RBP12.21□□□□□ -0.46
CD44-221ENST00000526000 CYB5RLQ6IPT4 315 aa12.2□□□□□ -0.46
CD44-221ENST00000526000 IFT140Q96RY7 1462 aa12.14□□□□□ -0.47
CD44-221ENST00000526000 TRHP20396 242 aaPredicted RBP12.13□□□□□ -0.47
CD44-221ENST00000526000 AQRO60306 1485 aaKnown RBP eCLIP12.13□□□□□ -0.47
CD44-221ENST00000526000 TOPBP1Q92547 1522 aa12.12□□□□□ -0.47
CD44-221ENST00000526000 RIMBP3CA6NJZ7 1639 aa12.09□□□□□ -0.47
CD44-221ENST00000526000 RIMBP3BA6NNM3 1639 aa12.09□□□□□ -0.47
CD44-221ENST00000526000 RIMBP3Q9UFD9 1639 aa12.09□□□□□ -0.47
CD44-221ENST00000526000 TDRD9Q8NDG6 1382 aaKnown RBP12.07□□□□□ -0.48
CD44-221ENST00000526000 ARHGEF11O15085 1522 aa12.06□□□□□ -0.48
CD44-221ENST00000526000 RAD54L2Q9Y4B4 1467 aa12.05□□□□□ -0.48
CD44-221ENST00000526000 CHMP7Q8WUX9 453 aaPredicted RBP12.03□□□□□ -0.48
CD44-221ENST00000526000 ABCC8Q09428 1581 aa12.03□□□□□ -0.48
CD44-221ENST00000526000 SOGA1O94964 1423 aa12.03□□□□□ -0.48
CD44-221ENST00000526000 DNMBPQ6XZF7 1577 aa12□□□□□ -0.49
CD44-221ENST00000526000 SUPT5HO00267 1087 aaKnown RBP11.99□□□□□ -0.49
CD44-221ENST00000526000 POLA1P09884 1462 aaPredicted RBP11.99□□□□□ -0.49
CD44-221ENST00000526000 EIF4G3O43432 1585 aaKnown RBP11.99□□□□□ -0.49
CD44-221ENST00000526000 PRDM2Q13029 1718 aa11.97□□□□□ -0.49
CD44-221ENST00000526000 ARAP1Q96P48 1450 aa11.95□□□□□ -0.5
CD44-221ENST00000526000 TARBP1Q13395 1621 aaKnown RBP11.95□□□□□ -0.5
CD44-221ENST00000526000 CHD1O14646 1710 aa11.93□□□□□ -0.5
CD44-221ENST00000526000 SNAPC4Q5SXM2 1469 aa11.92□□□□□ -0.5
CD44-221ENST00000526000 FGD5Q6ZNL6 1462 aa11.92□□□□□ -0.5
CD44-221ENST00000526000 CUX1P39880 1505 aa11.87□□□□□ -0.51
CD44-221ENST00000526000 GRIN2BQ13224 1484 aa11.85□□□□□ -0.51
CD44-221ENST00000526000 AEBP2Q6ZN18 517 aaPredicted RBP11.85□□□□□ -0.51
CD44-221ENST00000526000 GAPVD1Q14C86 1478 aa11.82□□□□□ -0.52
CD44-221ENST00000526000 MAGI1Q96QZ7 1491 aaPredicted RBP11.81□□□□□ -0.52
CD44-221ENST00000526000 SYNJ2O15056 1496 aa11.8□□□□□ -0.52
CD44-221ENST00000526000 CLASP1Q7Z460 1538 aa11.79□□□□□ -0.52
CD44-221ENST00000526000 SYNJ1O43426 1573 aa11.79□□□□□ -0.52
CD44-221ENST00000526000 ABCA10Q8WWZ4 1543 aa11.72□□□□□ -0.53
CD44-221ENST00000526000 WRNQ14191 1432 aaPredicted RBP eCLIP11.72□□□□□ -0.53
CD44-221ENST00000526000 ERCC6L2Q5T890 1561 aa11.71□□□□□ -0.53
CD44-221ENST00000526000 WDR97A6NE52 1622 aa11.69□□□□□ -0.54
CD44-221ENST00000526000 JPH4Q96JJ6 628 aa11.69□□□□□ -0.54
CD44-221ENST00000526000 GRIN2AQ12879 1464 aa11.69□□□□□ -0.54
CD44-221ENST00000526000 TTBK1Q5TCY1 1321 aaPredicted RBP11.67□□□□□ -0.54
CD44-221ENST00000526000 PBRM1Q86U86 1689 aa11.67□□□□□ -0.54
CD44-221ENST00000526000 FHAD1B1AJZ9 1412 aa11.65□□□□□ -0.54
CD44-221ENST00000526000 ABCA5Q8WWZ7 1642 aa11.64□□□□□ -0.55
CD44-221ENST00000526000 NUP160Q12769 1436 aa11.64□□□□□ -0.55
CD44-221ENST00000526000 PRG4Q92954 1404 aaPredicted RBP11.64□□□□□ -0.55
CD44-221ENST00000526000 CEP170Q5SW79 1584 aa11.63□□□□□ -0.55
CD44-221ENST00000526000 NPM1P06748 294 aaKnown RBP eCLIP11.63□□□□□ -0.55
CD44-221ENST00000526000 FAM69CQ0P6D2 419 aa11.63□□□□□ -0.55
CD44-221ENST00000526000 ADAMTS12P58397 1594 aa11.59□□□□□ -0.55
CD44-221ENST00000526000 TOP2BQ02880 1626 aa11.57□□□□□ -0.56
CD44-221ENST00000526000 ERICH3Q5RHP9 1530 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms