RNA–Protein interactions for RNA: ENST00000523541.1

CCNC-213, Transcript of cyclin C, humanhuman

TSL 1 (best)

Gene CCNC, Length 1,123 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNC-213ENST00000523541 SHROOM2Q13796 1616 aa29.42■■■□□ 2.3
CCNC-213ENST00000523541 PRG4Q92954 1404 aaPredicted RBP29.37■■■□□ 2.29
CCNC-213ENST00000523541 RUSC2Q8N2Y8 1516 aa29.36■■■□□ 2.29
CCNC-213ENST00000523541 KIAA0586Q9BVV6 1533 aa29.36■■■□□ 2.29
CCNC-213ENST00000523541 RAPGEF2Q9Y4G8 1499 aa29.2■■■□□ 2.26
CCNC-213ENST00000523541 TTBK1Q5TCY1 1321 aaPredicted RBP29.1■■■□□ 2.25
CCNC-213ENST00000523541 NPM1P06748 294 aaKnown RBP eCLIP29.09■■■□□ 2.25
CCNC-213ENST00000523541 CARMIL2Q6F5E8 1435 aa29.09■■■□□ 2.25
CCNC-213ENST00000523541 IQGAP2Q13576 1575 aa29.05■■■□□ 2.24
CCNC-213ENST00000523541 PRXQ9BXM0 1461 aa29.02■■■□□ 2.24
CCNC-213ENST00000523541 PTPRGP23470 1445 aa29■■■□□ 2.23
CCNC-213ENST00000523541 TNIKQ9UKE5 1360 aa29■■■□□ 2.23
CCNC-213ENST00000523541 CSRNP3Q8WYN3 585 aa28.98■■■□□ 2.23
CCNC-213ENST00000523541 EEA1Q15075 1411 aa28.97■■■□□ 2.23
CCNC-213ENST00000523541 ADCY10Q96PN6 1610 aa28.94■■■□□ 2.22
CCNC-213ENST00000523541 UGGT2Q9NYU1 1516 aa28.94■■■□□ 2.22
CCNC-213ENST00000523541 DISP1Q96F81 1524 aa28.89■■■□□ 2.21
CCNC-213ENST00000523541 FAM69CQ0P6D2 419 aa28.84■■■□□ 2.21
CCNC-213ENST00000523541 CTTNBP2Q8WZ74 1663 aa28.83■■■□□ 2.21
CCNC-213ENST00000523541 KIF13AQ9H1H9 1805 aa28.83■■■□□ 2.21
CCNC-213ENST00000523541 MAPKBP1O60336 1514 aa28.83■■■□□ 2.21
CCNC-213ENST00000523541 GOLGA3Q08378 1498 aa28.81■■■□□ 2.2
CCNC-213ENST00000523541 CHIC1Q5VXU3 224 aa28.81■■■□□ 2.2
CCNC-213ENST00000523541 UHRF1BP1LA0JNW5 1464 aa28.79■■■□□ 2.2
CCNC-213ENST00000523541 ABCC10Q5T3U5 1492 aa28.78■■■□□ 2.2
CCNC-213ENST00000523541 UACAQ9BZF9 1416 aa28.77■■■□□ 2.2
CCNC-213ENST00000523541 KIAA0556O60303 1618 aa28.76■■■□□ 2.2
CCNC-213ENST00000523541 ABCC2Q92887 1545 aa28.74■■■□□ 2.19
CCNC-213ENST00000523541 DIP2BQ9P265 1576 aa28.73■■■□□ 2.19
CCNC-213ENST00000523541 FAM9AQ8IZU1 332 aaPredicted RBP28.72■■■□□ 2.19
CCNC-213ENST00000523541 PLB1Q6P1J6 1458 aa28.64■■■□□ 2.17
CCNC-213ENST00000523541 KDM5BQ9UGL1 1544 aa28.63■■■□□ 2.17
CCNC-213ENST00000523541 ASXL2Q76L83 1435 aa28.62■■■□□ 2.17
CCNC-213ENST00000523541 TSPOAP1O95153 1857 aa28.6■■■□□ 2.17
CCNC-213ENST00000523541 P3H3Q8IVL6 736 aa28.56■■■□□ 2.16
CCNC-213ENST00000523541 KIF21BO75037 1637 aa28.55■■■□□ 2.16
CCNC-213ENST00000523541 ZCCHC11Q5TAX3 1644 aaKnown RBP28.54■■■□□ 2.16
CCNC-213ENST00000523541 RANGAP1P46060 587 aaPredicted RBP28.53■■■□□ 2.16
CCNC-213ENST00000523541 ABCA8O94911 1581 aa28.5■■■□□ 2.15
CCNC-213ENST00000523541 AEBP2Q6ZN18 517 aaPredicted RBP28.49■■■□□ 2.15
CCNC-213ENST00000523541 GLI2P10070 1586 aa28.47■■■□□ 2.15
CCNC-213ENST00000523541 SAMD9Q5K651 1589 aa28.47■■■□□ 2.15
CCNC-213ENST00000523541 KDM6BO15054 1643 aa28.47■■■□□ 2.15
CCNC-213ENST00000523541 EHMT2Q96KQ7 1210 aa28.43■■■□□ 2.14
CCNC-213ENST00000523541 EPRSP07814 1512 aaKnown RBP28.43■■■□□ 2.14
CCNC-213ENST00000523541 ARID3CA6NKF2 412 aa28.41■■■□□ 2.14
CCNC-213ENST00000523541 UBTFP17480 764 aaKnown RBP28.4■■■□□ 2.14
CCNC-213ENST00000523541 WDR7Q9Y4E6 1490 aa28.4■■■□□ 2.14
CCNC-213ENST00000523541 KCNH8Q96L42 1107 aa28.37■■■□□ 2.13
CCNC-213ENST00000523541 EFCAB5A4FU69 1503 aa28.35■■■□□ 2.13
CCNC-213ENST00000523541 MAP3K4Q9Y6R4 1608 aa28.32■■■□□ 2.12
CCNC-213ENST00000523541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.31■■■□□ 2.12
CCNC-213ENST00000523541 HNRNPUL2Q1KMD3 747 aaKnown RBP28.31■■■□□ 2.12
CCNC-213ENST00000523541 ATP10BO94823 1461 aa28.31■■■□□ 2.12
CCNC-213ENST00000523541 PPRC1Q5VV67 1664 aaKnown RBP28.31■■■□□ 2.12
CCNC-213ENST00000523541 TEX14Q8IWB6 1497 aa28.3■■■□□ 2.12
CCNC-213ENST00000523541 FHOD3Q2V2M9 1422 aa28.27■■■□□ 2.12
CCNC-213ENST00000523541 RAPGEF6Q8TEU7 1601 aa28.27■■■□□ 2.12
CCNC-213ENST00000523541 CD109Q6YHK3 1445 aa28.22■■■□□ 2.11
CCNC-213ENST00000523541 CFAP43Q8NDM7 1665 aa28.19■■■□□ 2.1
CCNC-213ENST00000523541 NUP153P49790 1475 aaKnown RBP28.18■■■□□ 2.1
CCNC-213ENST00000523541 MAGI3Q5TCQ9 1506 aa28.17■■■□□ 2.1
CCNC-213ENST00000523541 FMN1Q68DA7 1419 aa28.16■■■□□ 2.1
CCNC-213ENST00000523541 PLEKHD1A6NEE1 506 aa28.14■■■□□ 2.1
CCNC-213ENST00000523541 ARHGAP35Q9NRY4 1499 aa28.12■■■□□ 2.09
CCNC-213ENST00000523541 ATP1B4Q9UN42 357 aaPredicted RBP28.09■■■□□ 2.09
CCNC-213ENST00000523541 COL17A1Q9UMD9 1497 aaPredicted RBP28.08■■■□□ 2.09
CCNC-213ENST00000523541 PHLDB1Q86UU1 1377 aa28.07■■■□□ 2.08
CCNC-213ENST00000523541 ABCA9Q8IUA7 1624 aa28.02■■■□□ 2.08
CCNC-213ENST00000523541 CDK11AQ9UQ88 783 aaPredicted RBP28■■■□□ 2.07
CCNC-213ENST00000523541 KDM4FA0A1W2PPD8 638 aa27.96■■■□□ 2.07
CCNC-213ENST00000523541 ARAP3Q8WWN8 1544 aa27.94■■■□□ 2.06
CCNC-213ENST00000523541 HECW1Q76N89 1606 aa27.93■■■□□ 2.06
CCNC-213ENST00000523541 CDK13Q14004 1512 aaKnown RBP27.92■■■□□ 2.06
CCNC-213ENST00000523541 NEO1Q92859 1461 aa27.92■■■□□ 2.06
CCNC-213ENST00000523541 CLIP1P30622 1438 aa27.88■■■□□ 2.05
CCNC-213ENST00000523541 ADGRL1O94910 1474 aa27.88■■■□□ 2.05
CCNC-213ENST00000523541 CASKIN1Q8WXD9 1431 aa27.86■■■□□ 2.05
CCNC-213ENST00000523541 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.82■■■□□ 2.04
CCNC-213ENST00000523541 RAPGEF3O95398 923 aa27.81■■■□□ 2.04
CCNC-213ENST00000523541 TTC37Q6PGP7 1564 aa27.79■■■□□ 2.04
CCNC-213ENST00000523541 CCDC18Q5T9S5 1454 aa27.79■■■□□ 2.04
CCNC-213ENST00000523541 TROQ12816 1431 aaPredicted RBP27.78■■■□□ 2.04
CCNC-213ENST00000523541 CFAP74Q9C0B2 1584 aa27.77■■■□□ 2.04
CCNC-213ENST00000523541 FANCAO15360 1455 aa27.76■■■□□ 2.04
CCNC-213ENST00000523541 PLCH2O75038 1416 aa27.76■■■□□ 2.04
CCNC-213ENST00000523541 FYCO1Q9BQS8 1478 aa27.75■■■□□ 2.03
CCNC-213ENST00000523541 AKNAQ7Z591 1439 aa27.75■■■□□ 2.03
CCNC-213ENST00000523541 PCF11O94913 1555 aaKnown RBP27.71■■■□□ 2.03
CCNC-213ENST00000523541 EFCAB2Q5VUJ9 269 aa27.71■■■□□ 2.03
CCNC-213ENST00000523541 DENND4BO75064 1496 aaPredicted RBP27.7■■■□□ 2.03
CCNC-213ENST00000523541 KIF14Q15058 1648 aa27.7■■■□□ 2.02
CCNC-213ENST00000523541 LRRIQ1Q96JM4 1722 aa27.66■■■□□ 2.02
CCNC-213ENST00000523541 FRMPD1Q5SYB0 1578 aa27.65■■■□□ 2.02
CCNC-213ENST00000523541 CEP162Q5TB80 1403 aa27.65■■■□□ 2.02
CCNC-213ENST00000523541 ARID4BQ4LE39 1312 aaPredicted RBP27.65■■■□□ 2.02
CCNC-213ENST00000523541 MYO5CQ9NQX4 1742 aa27.64■■■□□ 2.02
CCNC-213ENST00000523541 RICTORQ6R327 1708 aa27.6■■■□□ 2.01
CCNC-213ENST00000523541 SCAPERQ9BY12 1400 aa27.58■■■□□ 2.01
CCNC-213ENST00000523541 ARHGAP5Q13017 1502 aa27.58■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms