RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 KIAA0586Q9BVV6 1533 aa27.47■■□□□ 1.99
LSM1-205ENST00000523511 SHROOM2Q13796 1616 aa27.43■■□□□ 1.98
LSM1-205ENST00000523511 RAPGEF2Q9Y4G8 1499 aa27.38■■□□□ 1.97
LSM1-205ENST00000523511 RUSC2Q8N2Y8 1516 aa27.37■■□□□ 1.97
LSM1-205ENST00000523511 ERCC6L2Q5T890 1561 aa27.36■■□□□ 1.97
LSM1-205ENST00000523511 NPM1P06748 294 aaKnown RBP eCLIP27.32■■□□□ 1.96
LSM1-205ENST00000523511 CARMIL2Q6F5E8 1435 aa27.3■■□□□ 1.96
LSM1-205ENST00000523511 CSRNP3Q8WYN3 585 aa27.24■■□□□ 1.95
LSM1-205ENST00000523511 IQGAP2Q13576 1575 aa27.19■■□□□ 1.94
LSM1-205ENST00000523511 PTPRGP23470 1445 aa27.19■■□□□ 1.94
LSM1-205ENST00000523511 EEA1Q15075 1411 aa27.19■■□□□ 1.94
LSM1-205ENST00000523511 TNIKQ9UKE5 1360 aa27.17■■□□□ 1.94
LSM1-205ENST00000523511 PRXQ9BXM0 1461 aa27.15■■□□□ 1.94
LSM1-205ENST00000523511 TTBK1Q5TCY1 1321 aaPredicted RBP27.15■■□□□ 1.94
LSM1-205ENST00000523511 FAM9AQ8IZU1 332 aaPredicted RBP27.14■■□□□ 1.94
LSM1-205ENST00000523511 CHIC1Q5VXU3 224 aa27.09■■□□□ 1.93
LSM1-205ENST00000523511 UGGT2Q9NYU1 1516 aa27.06■■□□□ 1.92
LSM1-205ENST00000523511 GOLGA3Q08378 1498 aa27.02■■□□□ 1.92
LSM1-205ENST00000523511 DISP1Q96F81 1524 aa27■■□□□ 1.91
LSM1-205ENST00000523511 UACAQ9BZF9 1416 aa26.96■■□□□ 1.91
LSM1-205ENST00000523511 FAM69CQ0P6D2 419 aa26.95■■□□□ 1.9
LSM1-205ENST00000523511 ADCY10Q96PN6 1610 aa26.93■■□□□ 1.9
LSM1-205ENST00000523511 MAPKBP1O60336 1514 aa26.91■■□□□ 1.9
LSM1-205ENST00000523511 UHRF1BP1LA0JNW5 1464 aa26.91■■□□□ 1.9
LSM1-205ENST00000523511 CTTNBP2Q8WZ74 1663 aa26.91■■□□□ 1.9
LSM1-205ENST00000523511 KIAA0556O60303 1618 aa26.89■■□□□ 1.9
LSM1-205ENST00000523511 ABCC2Q92887 1545 aa26.89■■□□□ 1.89
LSM1-205ENST00000523511 ABCC10Q5T3U5 1492 aa26.87■■□□□ 1.89
LSM1-205ENST00000523511 P3H3Q8IVL6 736 aa26.81■■□□□ 1.88
LSM1-205ENST00000523511 PLB1Q6P1J6 1458 aa26.81■■□□□ 1.88
LSM1-205ENST00000523511 UBTFP17480 764 aaKnown RBP26.8■■□□□ 1.88
LSM1-205ENST00000523511 RANGAP1P46060 587 aaPredicted RBP26.77■■□□□ 1.88
LSM1-205ENST00000523511 ASXL2Q76L83 1435 aa26.75■■□□□ 1.87
LSM1-205ENST00000523511 KDM5BQ9UGL1 1544 aa26.75■■□□□ 1.87
LSM1-205ENST00000523511 KIF21BO75037 1637 aa26.73■■□□□ 1.87
LSM1-205ENST00000523511 EHMT2Q96KQ7 1210 aa26.69■■□□□ 1.86
LSM1-205ENST00000523511 DIP2BQ9P265 1576 aa26.69■■□□□ 1.86
LSM1-205ENST00000523511 KIF13AQ9H1H9 1805 aa26.65■■□□□ 1.86
LSM1-205ENST00000523511 ABCA8O94911 1581 aa26.63■■□□□ 1.85
LSM1-205ENST00000523511 SAMD9Q5K651 1589 aa26.61■■□□□ 1.85
LSM1-205ENST00000523511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.6■■□□□ 1.85
LSM1-205ENST00000523511 HNRNPUL2Q1KMD3 747 aaKnown RBP26.6■■□□□ 1.85
LSM1-205ENST00000523511 ZCCHC11Q5TAX3 1644 aaKnown RBP26.58■■□□□ 1.85
LSM1-205ENST00000523511 KCNH8Q96L42 1107 aa26.58■■□□□ 1.85
LSM1-205ENST00000523511 GLI2P10070 1586 aa26.58■■□□□ 1.85
LSM1-205ENST00000523511 WDR7Q9Y4E6 1490 aa26.56■■□□□ 1.84
LSM1-205ENST00000523511 EFCAB5A4FU69 1503 aa26.56■■□□□ 1.84
LSM1-205ENST00000523511 EPRSP07814 1512 aaKnown RBP26.56■■□□□ 1.84
LSM1-205ENST00000523511 ARID3CA6NKF2 412 aa26.54■■□□□ 1.84
LSM1-205ENST00000523511 FHOD3Q2V2M9 1422 aa26.53■■□□□ 1.84
LSM1-205ENST00000523511 ATP10BO94823 1461 aa26.49■■□□□ 1.83
LSM1-205ENST00000523511 TEX14Q8IWB6 1497 aa26.47■■□□□ 1.83
LSM1-205ENST00000523511 PLEKHD1A6NEE1 506 aa26.46■■□□□ 1.83
LSM1-205ENST00000523511 RAPGEF6Q8TEU7 1601 aa26.45■■□□□ 1.82
LSM1-205ENST00000523511 FMN1Q68DA7 1419 aa26.43■■□□□ 1.82
LSM1-205ENST00000523511 CD109Q6YHK3 1445 aa26.43■■□□□ 1.82
LSM1-205ENST00000523511 ATP1B4Q9UN42 357 aaPredicted RBP26.42■■□□□ 1.82
LSM1-205ENST00000523511 TSPOAP1O95153 1857 aa26.4■■□□□ 1.82
LSM1-205ENST00000523511 KDM6BO15054 1643 aa26.4■■□□□ 1.82
LSM1-205ENST00000523511 NUP153P49790 1475 aaKnown RBP26.37■■□□□ 1.81
LSM1-205ENST00000523511 AEBP2Q6ZN18 517 aaPredicted RBP26.36■■□□□ 1.81
LSM1-205ENST00000523511 CDK11AQ9UQ88 783 aaPredicted RBP26.36■■□□□ 1.81
LSM1-205ENST00000523511 MAP3K4Q9Y6R4 1608 aa26.36■■□□□ 1.81
LSM1-205ENST00000523511 ARHGAP35Q9NRY4 1499 aa26.35■■□□□ 1.81
LSM1-205ENST00000523511 MAGI3Q5TCQ9 1506 aa26.33■■□□□ 1.81
LSM1-205ENST00000523511 CFAP43Q8NDM7 1665 aa26.28■■□□□ 1.8
LSM1-205ENST00000523511 PHLDB1Q86UU1 1377 aa26.27■■□□□ 1.8
LSM1-205ENST00000523511 PPRC1Q5VV67 1664 aaKnown RBP26.25■■□□□ 1.79
LSM1-205ENST00000523511 CLIP1P30622 1438 aa26.21■■□□□ 1.79
LSM1-205ENST00000523511 HECW1Q76N89 1606 aa26.18■■□□□ 1.78
LSM1-205ENST00000523511 ABCA9Q8IUA7 1624 aa26.17■■□□□ 1.78
LSM1-205ENST00000523511 COL17A1Q9UMD9 1497 aaPredicted RBP26.17■■□□□ 1.78
LSM1-205ENST00000523511 NEO1Q92859 1461 aa26.12■■□□□ 1.77
LSM1-205ENST00000523511 CDK13Q14004 1512 aaKnown RBP26.12■■□□□ 1.77
LSM1-205ENST00000523511 CASKIN1Q8WXD9 1431 aa26.12■■□□□ 1.77
LSM1-205ENST00000523511 ARAP3Q8WWN8 1544 aa26.1■■□□□ 1.77
LSM1-205ENST00000523511 CCDC18Q5T9S5 1454 aa26.06■■□□□ 1.76
LSM1-205ENST00000523511 TROQ12816 1431 aaPredicted RBP26.04■■□□□ 1.76
LSM1-205ENST00000523511 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.04■■□□□ 1.76
LSM1-205ENST00000523511 RAPGEF3O95398 923 aa26.03■■□□□ 1.76
LSM1-205ENST00000523511 EFCAB2Q5VUJ9 269 aa26.03■■□□□ 1.76
LSM1-205ENST00000523511 FANCAO15360 1455 aa26.01■■□□□ 1.75
LSM1-205ENST00000523511 FYCO1Q9BQS8 1478 aa26.01■■□□□ 1.75
LSM1-205ENST00000523511 PLCH2O75038 1416 aa26■■□□□ 1.75
LSM1-205ENST00000523511 AKNAQ7Z591 1439 aa26■■□□□ 1.75
LSM1-205ENST00000523511 KDM4FA0A1W2PPD8 638 aa25.98■■□□□ 1.75
LSM1-205ENST00000523511 LOC105371045A0A1W2PR82 267 aa25.98■■□□□ 1.75
LSM1-205ENST00000523511 CEP162Q5TB80 1403 aa25.97■■□□□ 1.75
LSM1-205ENST00000523511 DENND4BO75064 1496 aaPredicted RBP25.96■■□□□ 1.75
LSM1-205ENST00000523511 CFAP74Q9C0B2 1584 aa25.95■■□□□ 1.75
LSM1-205ENST00000523511 PCF11O94913 1555 aaKnown RBP25.94■■□□□ 1.74
LSM1-205ENST00000523511 KIF14Q15058 1648 aa25.93■■□□□ 1.74
LSM1-205ENST00000523511 TTC37Q6PGP7 1564 aa25.91■■□□□ 1.74
LSM1-205ENST00000523511 SCAPERQ9BY12 1400 aa25.87■■□□□ 1.73
LSM1-205ENST00000523511 ADGRL1O94910 1474 aa25.85■■□□□ 1.73
LSM1-205ENST00000523511 MTUS2Q5JR59 1369 aa25.85■■□□□ 1.73
LSM1-205ENST00000523511 ARID4BQ4LE39 1312 aaPredicted RBP25.84■■□□□ 1.73
LSM1-205ENST00000523511 ARHGAP5Q13017 1502 aa25.82■■□□□ 1.72
LSM1-205ENST00000523511 MYT1LQ9UL68 1186 aa25.8■■□□□ 1.72
LSM1-205ENST00000523511 MAGI2Q86UL8 1455 aa25.79■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms