RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 KIAA0586Q9BVV6 1533 aa25.2■■□□□ 1.62
LSM1-203ENST00000520755 GOLGA3Q08378 1498 aa25.2■■□□□ 1.62
LSM1-203ENST00000520755 RIMBP3CA6NJZ7 1639 aa25.19■■□□□ 1.62
LSM1-203ENST00000520755 RIMBP3BA6NNM3 1639 aa25.19■■□□□ 1.62
LSM1-203ENST00000520755 RIMBP3Q9UFD9 1639 aa25.19■■□□□ 1.62
LSM1-203ENST00000520755 SHROOM2Q13796 1616 aa25.18■■□□□ 1.62
LSM1-203ENST00000520755 ARHGEF11O15085 1522 aa25.17■■□□□ 1.62
LSM1-203ENST00000520755 IQGAP2Q13576 1575 aa25.15■■□□□ 1.62
LSM1-203ENST00000520755 EHMT2Q96KQ7 1210 aa25.13■■□□□ 1.61
LSM1-203ENST00000520755 JPH4Q96JJ6 628 aa25.1■■□□□ 1.61
LSM1-203ENST00000520755 ERCC6L2Q5T890 1561 aa25.09■■□□□ 1.61
LSM1-203ENST00000520755 PRG4Q92954 1404 aaPredicted RBP25.06■■□□□ 1.6
LSM1-203ENST00000520755 LOC105371045A0A1W2PR82 267 aa24.99■■□□□ 1.59
LSM1-203ENST00000520755 UBTFP17480 764 aaKnown RBP24.99■■□□□ 1.59
LSM1-203ENST00000520755 ARAP1Q96P48 1450 aa24.99■■□□□ 1.59
LSM1-203ENST00000520755 UGGT2Q9NYU1 1516 aa24.99■■□□□ 1.59
LSM1-203ENST00000520755 CARMIL2Q6F5E8 1435 aa24.94■■□□□ 1.58
LSM1-203ENST00000520755 TNIKQ9UKE5 1360 aa24.93■■□□□ 1.58
LSM1-203ENST00000520755 DISP1Q96F81 1524 aa24.92■■□□□ 1.58
LSM1-203ENST00000520755 CYB5RLQ6IPT4 315 aa24.92■■□□□ 1.58
LSM1-203ENST00000520755 KIAA0556O60303 1618 aa24.91■■□□□ 1.58
LSM1-203ENST00000520755 RANGAP1P46060 587 aaPredicted RBP24.9■■□□□ 1.58
LSM1-203ENST00000520755 SAMD9Q5K651 1589 aa24.88■■□□□ 1.57
LSM1-203ENST00000520755 TTBK1Q5TCY1 1321 aaPredicted RBP24.84■■□□□ 1.57
LSM1-203ENST00000520755 CEP162Q5TB80 1403 aa24.79■■□□□ 1.56
LSM1-203ENST00000520755 P3H3Q8IVL6 736 aa24.79■■□□□ 1.56
LSM1-203ENST00000520755 EFCAB5A4FU69 1503 aa24.79■■□□□ 1.56
LSM1-203ENST00000520755 PTPRGP23470 1445 aa24.78■■□□□ 1.56
LSM1-203ENST00000520755 ARHGAP35Q9NRY4 1499 aa24.76■■□□□ 1.55
LSM1-203ENST00000520755 CLIP1P30622 1438 aa24.72■■□□□ 1.55
LSM1-203ENST00000520755 FHOD3Q2V2M9 1422 aa24.7■■□□□ 1.55
LSM1-203ENST00000520755 ADCY10Q96PN6 1610 aa24.68■■□□□ 1.54
LSM1-203ENST00000520755 UACAQ9BZF9 1416 aa24.63■■□□□ 1.53
LSM1-203ENST00000520755 PLB1Q6P1J6 1458 aa24.62■■□□□ 1.53
LSM1-203ENST00000520755 ABCC2Q92887 1545 aa24.61■■□□□ 1.53
LSM1-203ENST00000520755 ABCA8O94911 1581 aa24.6■■□□□ 1.53
LSM1-203ENST00000520755 UHRF1BP1LA0JNW5 1464 aa24.58■■□□□ 1.52
LSM1-203ENST00000520755 RAPGEF6Q8TEU7 1601 aa24.57■■□□□ 1.52
LSM1-203ENST00000520755 NPM1P06748 294 aaKnown RBP eCLIP24.53■■□□□ 1.52
LSM1-203ENST00000520755 PCF11O94913 1555 aaKnown RBP24.52■■□□□ 1.52
LSM1-203ENST00000520755 FMN1Q68DA7 1419 aa24.51■■□□□ 1.51
LSM1-203ENST00000520755 ZCCHC11Q5TAX3 1644 aaKnown RBP24.5■■□□□ 1.51
LSM1-203ENST00000520755 LRRIQ1Q96JM4 1722 aa24.5■■□□□ 1.51
LSM1-203ENST00000520755 KDM5BQ9UGL1 1544 aa24.47■■□□□ 1.51
LSM1-203ENST00000520755 ARID3CA6NKF2 412 aa24.45■■□□□ 1.5
LSM1-203ENST00000520755 VPS8Q8N3P4 1428 aa24.44■■□□□ 1.5
LSM1-203ENST00000520755 NUP153P49790 1475 aaKnown RBP24.44■■□□□ 1.5
LSM1-203ENST00000520755 MAPKBP1O60336 1514 aa24.43■■□□□ 1.5
LSM1-203ENST00000520755 HECW1Q76N89 1606 aa24.42■■□□□ 1.5
LSM1-203ENST00000520755 ATP1B4Q9UN42 357 aaPredicted RBP24.41■■□□□ 1.5
LSM1-203ENST00000520755 FYCO1Q9BQS8 1478 aa24.38■■□□□ 1.49
LSM1-203ENST00000520755 ATP10BO94823 1461 aa24.38■■□□□ 1.49
LSM1-203ENST00000520755 CASKIN1Q8WXD9 1431 aa24.36■■□□□ 1.49
LSM1-203ENST00000520755 ASXL2Q76L83 1435 aa24.35■■□□□ 1.49
LSM1-203ENST00000520755 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.35■■□□□ 1.49
LSM1-203ENST00000520755 HNRNPUL2Q1KMD3 747 aaKnown RBP24.35■■□□□ 1.49
LSM1-203ENST00000520755 CFAP43Q8NDM7 1665 aa24.34■■□□□ 1.49
LSM1-203ENST00000520755 TRHP20396 242 aaPredicted RBP24.34■■□□□ 1.49
LSM1-203ENST00000520755 CDK13Q14004 1512 aaKnown RBP24.33■■□□□ 1.49
LSM1-203ENST00000520755 KIF13AQ9H1H9 1805 aa24.32■■□□□ 1.48
LSM1-203ENST00000520755 EPRSP07814 1512 aaKnown RBP24.31■■□□□ 1.48
LSM1-203ENST00000520755 DIP2BQ9P265 1576 aa24.29■■□□□ 1.48
LSM1-203ENST00000520755 WDR7Q9Y4E6 1490 aa24.28■■□□□ 1.48
LSM1-203ENST00000520755 ABCC10Q5T3U5 1492 aa24.27■■□□□ 1.48
LSM1-203ENST00000520755 CCDC18Q5T9S5 1454 aa24.25■■□□□ 1.47
LSM1-203ENST00000520755 TIAM1Q13009 1591 aa24.24■■□□□ 1.47
LSM1-203ENST00000520755 FAM69CQ0P6D2 419 aa24.21■■□□□ 1.47
LSM1-203ENST00000520755 KCNH8Q96L42 1107 aa24.2■■□□□ 1.46
LSM1-203ENST00000520755 PLEKHD1A6NEE1 506 aa24.19■■□□□ 1.46
LSM1-203ENST00000520755 GLI2P10070 1586 aa24.17■■□□□ 1.46
LSM1-203ENST00000520755 MAP3K1Q13233 1512 aa24.17■■□□□ 1.46
LSM1-203ENST00000520755 MAGI3Q5TCQ9 1506 aa24.17■■□□□ 1.46
LSM1-203ENST00000520755 TSPOAP1O95153 1857 aa24.17■■□□□ 1.46
LSM1-203ENST00000520755 CDK11AQ9UQ88 783 aaPredicted RBP24.15■■□□□ 1.46
LSM1-203ENST00000520755 MAP3K4Q9Y6R4 1608 aa24.12■■□□□ 1.45
LSM1-203ENST00000520755 TROQ12816 1431 aaPredicted RBP24.1■■□□□ 1.45
LSM1-203ENST00000520755 ABCA9Q8IUA7 1624 aa24.09■■□□□ 1.45
LSM1-203ENST00000520755 KIF14Q15058 1648 aa24.08■■□□□ 1.45
LSM1-203ENST00000520755 EHBP1L1Q8N3D4 1523 aa24.07■■□□□ 1.44
LSM1-203ENST00000520755 PPRC1Q5VV67 1664 aaKnown RBP24.05■■□□□ 1.44
LSM1-203ENST00000520755 LRRC9Q6ZRR7 1453 aa24.05■■□□□ 1.44
LSM1-203ENST00000520755 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.05■■□□□ 1.44
LSM1-203ENST00000520755 TTC37Q6PGP7 1564 aa24.04■■□□□ 1.44
LSM1-203ENST00000520755 MTUS2Q5JR59 1369 aa24.03■■□□□ 1.44
LSM1-203ENST00000520755 CD109Q6YHK3 1445 aa24.02■■□□□ 1.44
LSM1-203ENST00000520755 APLP2Q06481 763 aa24■■□□□ 1.43
LSM1-203ENST00000520755 SUPT6HQ7KZ85 1726 aaKnown RBP23.99■■□□□ 1.43
LSM1-203ENST00000520755 MYO5CQ9NQX4 1742 aa23.98■■□□□ 1.43
LSM1-203ENST00000520755 KANK4Q5T7N3 995 aaPredicted RBP23.97■■□□□ 1.43
LSM1-203ENST00000520755 TEX14Q8IWB6 1497 aa23.94■■□□□ 1.42
LSM1-203ENST00000520755 CDC42BPAQ5VT25 1732 aa23.92■■□□□ 1.42
LSM1-203ENST00000520755 PREX2Q70Z35 1606 aa23.88■■□□□ 1.41
LSM1-203ENST00000520755 NCOA2Q15596 1464 aa23.88■■□□□ 1.41
LSM1-203ENST00000520755 CDC42BPBQ9Y5S2 1711 aa23.88■■□□□ 1.41
LSM1-203ENST00000520755 PLCH2O75038 1416 aa23.86■■□□□ 1.41
LSM1-203ENST00000520755 PPARGC1BQ86YN6 1023 aaKnown RBP23.86■■□□□ 1.41
LSM1-203ENST00000520755 CFAP74Q9C0B2 1584 aa23.86■■□□□ 1.41
LSM1-203ENST00000520755 ITSN2Q9NZM3 1697 aa23.86■■□□□ 1.41
LSM1-203ENST00000520755 ARHGAP5Q13017 1502 aa23.84■■□□□ 1.41
LSM1-203ENST00000520755 KDM6BO15054 1643 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms