RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 CTTNBP2Q8WZ74 1663 aa13.9□□□□□ -0.18
VAPB-206ENST00000520497 MAGI1Q96QZ7 1491 aaPredicted RBP13.88□□□□□ -0.19
VAPB-206ENST00000520497 CHD1O14646 1710 aa13.87□□□□□ -0.19
VAPB-206ENST00000520497 SNAPC4Q5SXM2 1469 aa13.87□□□□□ -0.19
VAPB-206ENST00000520497 FHAD1B1AJZ9 1412 aa13.86□□□□□ -0.19
VAPB-206ENST00000520497 ARHGEF11O15085 1522 aa13.85□□□□□ -0.19
VAPB-206ENST00000520497 TNIKQ9UKE5 1360 aa13.84□□□□□ -0.19
VAPB-206ENST00000520497 FBLN2P98095 1184 aa13.84□□□□□ -0.19
VAPB-206ENST00000520497 SYNJ2O15056 1496 aa13.81□□□□□ -0.2
VAPB-206ENST00000520497 EHMT2Q96KQ7 1210 aa13.81□□□□□ -0.2
VAPB-206ENST00000520497 PPP6R1Q9UPN7 881 aa13.8□□□□□ -0.2
VAPB-206ENST00000520497 GRIN2AQ12879 1464 aa13.79□□□□□ -0.2
VAPB-206ENST00000520497 CYB5RLQ6IPT4 315 aa13.78□□□□□ -0.2
VAPB-206ENST00000520497 UBTFP17480 764 aaKnown RBP13.77□□□□□ -0.21
VAPB-206ENST00000520497 CEP162Q5TB80 1403 aa13.76□□□□□ -0.21
VAPB-206ENST00000520497 PIAS4Q8N2W9 510 aaPredicted RBP13.76□□□□□ -0.21
VAPB-206ENST00000520497 ARAP1Q96P48 1450 aa13.75□□□□□ -0.21
VAPB-206ENST00000520497 ADRA2BP18089 450 aa13.75□□□□□ -0.21
VAPB-206ENST00000520497 CEP170Q5SW79 1584 aa13.74□□□□□ -0.21
VAPB-206ENST00000520497 IQGAP2Q13576 1575 aa13.72□□□□□ -0.21
VAPB-206ENST00000520497 NUP160Q12769 1436 aa13.71□□□□□ -0.22
VAPB-206ENST00000520497 CLASP1Q7Z460 1538 aa13.69□□□□□ -0.22
VAPB-206ENST00000520497 CHMP7Q8WUX9 453 aaPredicted RBP13.69□□□□□ -0.22
VAPB-206ENST00000520497 CLIP1P30622 1438 aa13.69□□□□□ -0.22
VAPB-206ENST00000520497 SAMD9Q5K651 1589 aa13.69□□□□□ -0.22
VAPB-206ENST00000520497 KIAA0586Q9BVV6 1533 aa13.68□□□□□ -0.22
VAPB-206ENST00000520497 EFCAB5A4FU69 1503 aa13.67□□□□□ -0.22
VAPB-206ENST00000520497 ARHGAP35Q9NRY4 1499 aa13.66□□□□□ -0.22
VAPB-206ENST00000520497 UGGT2Q9NYU1 1516 aa13.65□□□□□ -0.22
VAPB-206ENST00000520497 SHROOM2Q13796 1616 aa13.63□□□□□ -0.23
VAPB-206ENST00000520497 TRHP20396 242 aaPredicted RBP13.61□□□□□ -0.23
VAPB-206ENST00000520497 KIAA0556O60303 1618 aa13.6□□□□□ -0.23
VAPB-206ENST00000520497 ERCC6L2Q5T890 1561 aa13.58□□□□□ -0.23
VAPB-206ENST00000520497 DISP1Q96F81 1524 aa13.57□□□□□ -0.24
VAPB-206ENST00000520497 VPS8Q8N3P4 1428 aa13.56□□□□□ -0.24
VAPB-206ENST00000520497 RANGAP1P46060 587 aaPredicted RBP13.55□□□□□ -0.24
VAPB-206ENST00000520497 FHOD3Q2V2M9 1422 aa13.53□□□□□ -0.24
VAPB-206ENST00000520497 PCF11O94913 1555 aaKnown RBP13.52□□□□□ -0.25
VAPB-206ENST00000520497 LRRIQ1Q96JM4 1722 aa13.52□□□□□ -0.25
VAPB-206ENST00000520497 JPH4Q96JJ6 628 aa13.49□□□□□ -0.25
VAPB-206ENST00000520497 FMN1Q68DA7 1419 aa13.48□□□□□ -0.25
VAPB-206ENST00000520497 CFAP43Q8NDM7 1665 aa13.48□□□□□ -0.25
VAPB-206ENST00000520497 CARMIL2Q6F5E8 1435 aa13.47□□□□□ -0.25
VAPB-206ENST00000520497 FYCO1Q9BQS8 1478 aa13.47□□□□□ -0.25
VAPB-206ENST00000520497 PRG4Q92954 1404 aaPredicted RBP13.46□□□□□ -0.26
VAPB-206ENST00000520497 P3H3Q8IVL6 736 aa13.45□□□□□ -0.26
VAPB-206ENST00000520497 CASKIN1Q8WXD9 1431 aa13.45□□□□□ -0.26
VAPB-206ENST00000520497 HECW1Q76N89 1606 aa13.44□□□□□ -0.26
VAPB-206ENST00000520497 RAPGEF6Q8TEU7 1601 aa13.44□□□□□ -0.26
VAPB-206ENST00000520497 MAP3K1Q13233 1512 aa13.43□□□□□ -0.26
VAPB-206ENST00000520497 TIAM1Q13009 1591 aa13.41□□□□□ -0.26
VAPB-206ENST00000520497 ABCA8O94911 1581 aa13.41□□□□□ -0.26
VAPB-206ENST00000520497 NUP153P49790 1475 aaKnown RBP13.36□□□□□ -0.27
VAPB-206ENST00000520497 CCDC18Q5T9S5 1454 aa13.36□□□□□ -0.27
VAPB-206ENST00000520497 PLB1Q6P1J6 1458 aa13.36□□□□□ -0.27
VAPB-206ENST00000520497 EPRSP07814 1512 aaKnown RBP13.34□□□□□ -0.27
VAPB-206ENST00000520497 PTPRGP23470 1445 aa13.33□□□□□ -0.28
VAPB-206ENST00000520497 CDK13Q14004 1512 aaKnown RBP13.31□□□□□ -0.28
VAPB-206ENST00000520497 ABCC2Q92887 1545 aa13.31□□□□□ -0.28
VAPB-206ENST00000520497 LRRC9Q6ZRR7 1453 aa13.3□□□□□ -0.28
VAPB-206ENST00000520497 UHRF1BP1LA0JNW5 1464 aa13.29□□□□□ -0.28
VAPB-206ENST00000520497 ADCY10Q96PN6 1610 aa13.29□□□□□ -0.28
VAPB-206ENST00000520497 APLP2Q06481 763 aa13.29□□□□□ -0.28
VAPB-206ENST00000520497 UACAQ9BZF9 1416 aa13.29□□□□□ -0.28
VAPB-206ENST00000520497 MAGI3Q5TCQ9 1506 aa13.29□□□□□ -0.28
VAPB-206ENST00000520497 EHBP1L1Q8N3D4 1523 aa13.29□□□□□ -0.28
VAPB-206ENST00000520497 SUPT6HQ7KZ85 1726 aaKnown RBP13.27□□□□□ -0.28
VAPB-206ENST00000520497 ZCCHC11Q5TAX3 1644 aaKnown RBP13.27□□□□□ -0.29
VAPB-206ENST00000520497 TTBK1Q5TCY1 1321 aaPredicted RBP13.26□□□□□ -0.29
VAPB-206ENST00000520497 KIF13AQ9H1H9 1805 aa13.26□□□□□ -0.29
VAPB-206ENST00000520497 KANK4Q5T7N3 995 aaPredicted RBP13.25□□□□□ -0.29
VAPB-206ENST00000520497 ATP10BO94823 1461 aa13.24□□□□□ -0.29
VAPB-206ENST00000520497 PPARGC1BQ86YN6 1023 aaKnown RBP13.24□□□□□ -0.29
VAPB-206ENST00000520497 ATP1B4Q9UN42 357 aaPredicted RBP13.24□□□□□ -0.29
VAPB-206ENST00000520497 KDM5BQ9UGL1 1544 aa13.23□□□□□ -0.29
VAPB-206ENST00000520497 MTUS2Q5JR59 1369 aa13.2□□□□□ -0.3
VAPB-206ENST00000520497 FAM69CQ0P6D2 419 aa13.2□□□□□ -0.3
VAPB-206ENST00000520497 KIF14Q15058 1648 aa13.19□□□□□ -0.3
VAPB-206ENST00000520497 TROQ12816 1431 aaPredicted RBP13.18□□□□□ -0.3
VAPB-206ENST00000520497 NCOA2Q15596 1464 aa13.17□□□□□ -0.3
VAPB-206ENST00000520497 ABCC10Q5T3U5 1492 aa13.17□□□□□ -0.3
VAPB-206ENST00000520497 CDC42BPAQ5VT25 1732 aa13.17□□□□□ -0.3
VAPB-206ENST00000520497 ITSN2Q9NZM3 1697 aa13.17□□□□□ -0.3
VAPB-206ENST00000520497 DIP2BQ9P265 1576 aa13.16□□□□□ -0.3
VAPB-206ENST00000520497 ARID3CA6NKF2 412 aa13.16□□□□□ -0.3
VAPB-206ENST00000520497 MAPKBP1O60336 1514 aa13.15□□□□□ -0.3
VAPB-206ENST00000520497 NPM1P06748 294 aaKnown RBP eCLIP13.15□□□□□ -0.3
VAPB-206ENST00000520497 TRIM26Q12899 539 aaPredicted RBP13.15□□□□□ -0.3
VAPB-206ENST00000520497 RRBP1Q9P2E9 1410 aaKnown RBP13.14□□□□□ -0.31
VAPB-206ENST00000520497 CDK11AQ9UQ88 783 aaPredicted RBP13.14□□□□□ -0.31
VAPB-206ENST00000520497 PHLDB1Q86UU1 1377 aa13.14□□□□□ -0.31
VAPB-206ENST00000520497 MYO5CQ9NQX4 1742 aa13.12□□□□□ -0.31
VAPB-206ENST00000520497 CDC42BPBQ9Y5S2 1711 aa13.11□□□□□ -0.31
VAPB-206ENST00000520497 PREX2Q70Z35 1606 aa13.11□□□□□ -0.31
VAPB-206ENST00000520497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.11□□□□□ -0.31
VAPB-206ENST00000520497 HNRNPUL2Q1KMD3 747 aaKnown RBP13.11□□□□□ -0.31
VAPB-206ENST00000520497 MYOM3Q5VTT5 1437 aa13.11□□□□□ -0.31
VAPB-206ENST00000520497 TTC37Q6PGP7 1564 aa13.11□□□□□ -0.31
VAPB-206ENST00000520497 TSPOAP1O95153 1857 aa13.1□□□□□ -0.31
VAPB-206ENST00000520497 PTPN23Q9H3S7 1636 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms