RNA–Protein interactions for RNA: ENST00000515385.1

SMAD1-215, Transcript of SMAD family member 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SMAD1, Length 2,085 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-215ENST00000515385 PPP4R2Q9NY27 417 aa17.78■□□□□ 0.44
SMAD1-215ENST00000515385 WDR97A6NE52 1622 aa17.78■□□□□ 0.44
SMAD1-215ENST00000515385 RAB3GAP2Q9H2M9 1393 aa17.78■□□□□ 0.44
SMAD1-215ENST00000515385 KANK4Q5T7N3 995 aaPredicted RBP17.77■□□□□ 0.44
SMAD1-215ENST00000515385 NOP58Q9Y2X3 529 aaKnown RBP17.75■□□□□ 0.43
SMAD1-215ENST00000515385 EIF5BO60841 1220 aaKnown RBP17.73■□□□□ 0.43
SMAD1-215ENST00000515385 SETD5Q9C0A6 1442 aa17.73■□□□□ 0.43
SMAD1-215ENST00000515385 DAXXQ9UER7 740 aaPredicted RBP17.73■□□□□ 0.43
SMAD1-215ENST00000515385 PRXQ9BXM0 1461 aa17.68■□□□□ 0.42
SMAD1-215ENST00000515385 MAP3K1Q13233 1512 aa17.64■□□□□ 0.41
SMAD1-215ENST00000515385 HNRNPUQ00839 825 aaKnown RBP eCLIP17.64■□□□□ 0.41
SMAD1-215ENST00000515385 RANGAP1P46060 587 aaPredicted RBP17.63■□□□□ 0.41
SMAD1-215ENST00000515385 RTL5Q5HYW3 569 aaPredicted RBP17.62■□□□□ 0.41
SMAD1-215ENST00000515385 PEG3Q9GZU2 1588 aa17.61■□□□□ 0.41
SMAD1-215ENST00000515385 TOP2BQ02880 1626 aa17.6■□□□□ 0.41
SMAD1-215ENST00000515385 SIN3AQ96ST3 1273 aa17.59■□□□□ 0.41
SMAD1-215ENST00000515385 IRX6P78412 446 aaPredicted RBP17.58■□□□□ 0.4
SMAD1-215ENST00000515385 NBR1Q14596 966 aa17.57■□□□□ 0.4
SMAD1-215ENST00000515385 SALL2Q9Y467 1007 aaPredicted RBP17.57■□□□□ 0.4
SMAD1-215ENST00000515385 ANP32AP39687 249 aaKnown RBP17.54■□□□□ 0.4
SMAD1-215ENST00000515385 IPO9Q96P70 1041 aaKnown RBP17.54■□□□□ 0.4
SMAD1-215ENST00000515385 PAK3O75914 559 aaPredicted RBP17.52■□□□□ 0.39
SMAD1-215ENST00000515385 BIVM-ERCC5R4GMW8 1640 aa17.52■□□□□ 0.39
SMAD1-215ENST00000515385 ARHGAP35Q9NRY4 1499 aa17.5■□□□□ 0.39
SMAD1-215ENST00000515385 TIAM1Q13009 1591 aa17.5■□□□□ 0.39
SMAD1-215ENST00000515385 ZBTB47Q9UFB7 747 aaPredicted RBP17.49■□□□□ 0.39
SMAD1-215ENST00000515385 FHAD1B1AJZ9 1412 aa17.48■□□□□ 0.39
SMAD1-215ENST00000515385 TONSLQ96HA7 1378 aa17.48■□□□□ 0.39
SMAD1-215ENST00000515385 B4GALNT3Q6L9W6 998 aa17.48■□□□□ 0.39
SMAD1-215ENST00000515385 HIRIP3Q9BW71 556 aaPredicted RBP17.48■□□□□ 0.39
SMAD1-215ENST00000515385 USP35Q9P2H5 1018 aa17.47■□□□□ 0.39
SMAD1-215ENST00000515385 WASHC2AQ641Q2 1341 aa17.47■□□□□ 0.39
SMAD1-215ENST00000515385 ZBED9Q6R2W3 1325 aa17.45■□□□□ 0.38
SMAD1-215ENST00000515385 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.45■□□□□ 0.38
SMAD1-215ENST00000515385 LRRC9Q6ZRR7 1453 aa17.44■□□□□ 0.38
SMAD1-215ENST00000515385 C11orf95C9JLR9 678 aaPredicted RBP17.43■□□□□ 0.38
SMAD1-215ENST00000515385 KIF27Q86VH2 1401 aa17.41■□□□□ 0.38
SMAD1-215ENST00000515385 PKNOX2Q96KN3 472 aa17.4■□□□□ 0.38
SMAD1-215ENST00000515385 IL27Q8NEV9 243 aa17.4■□□□□ 0.38
SMAD1-215ENST00000515385 PHLDB1Q86UU1 1377 aa17.39■□□□□ 0.37
SMAD1-215ENST00000515385 NCAPD3P42695 1498 aa17.38■□□□□ 0.37
SMAD1-215ENST00000515385 CCDC136Q96JN2 1154 aa17.38■□□□□ 0.37
SMAD1-215ENST00000515385 NCOA2Q15596 1464 aa17.37■□□□□ 0.37
SMAD1-215ENST00000515385 WASHC2CQ9Y4E1 1318 aa17.36■□□□□ 0.37
SMAD1-215ENST00000515385 FAM50AQ14320 339 aaKnown RBP17.36■□□□□ 0.37
SMAD1-215ENST00000515385 CNTLNQ9NXG0 1405 aa17.35■□□□□ 0.37
SMAD1-215ENST00000515385 SMG6Q86US8 1419 aaKnown RBP17.33■□□□□ 0.37
SMAD1-215ENST00000515385 RNF123Q5XPI4 1314 aa17.32■□□□□ 0.36
SMAD1-215ENST00000515385 UNC13AQ9UPW8 1703 aa17.32■□□□□ 0.36
SMAD1-215ENST00000515385 UACAQ9BZF9 1416 aa17.32■□□□□ 0.36
SMAD1-215ENST00000515385 PPM1GO15355 546 aaPredicted RBP17.32■□□□□ 0.36
SMAD1-215ENST00000515385 CFAP43Q8NDM7 1665 aa17.31■□□□□ 0.36
SMAD1-215ENST00000515385 ATAD2BQ9ULI0 1458 aa17.28■□□□□ 0.36
SMAD1-215ENST00000515385 PRKRIP1Q9H875 184 aaPredicted RBP17.27■□□□□ 0.36
SMAD1-215ENST00000515385 KDM5BQ9UGL1 1544 aa17.26■□□□□ 0.35
SMAD1-215ENST00000515385 CCDC18Q5T9S5 1454 aa17.26■□□□□ 0.35
SMAD1-215ENST00000515385 MRS2Q9HD23 443 aa17.25■□□□□ 0.35
SMAD1-215ENST00000515385 RTN4Q9NQC3 1192 aaKnown RBP17.25■□□□□ 0.35
SMAD1-215ENST00000515385 NEFMP07197 916 aa17.25■□□□□ 0.35
SMAD1-215ENST00000515385 HSPA5P11021 654 aaKnown RBP17.25■□□□□ 0.35
SMAD1-215ENST00000515385 EIF4G2P78344 907 aaKnown RBP eCLIP17.24■□□□□ 0.35
SMAD1-215ENST00000515385 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
SMAD1-215ENST00000515385 HFM1A2PYH4 1435 aa17.24■□□□□ 0.35
SMAD1-215ENST00000515385 NUDCQ9Y266 331 aa17.23■□□□□ 0.35
SMAD1-215ENST00000515385 TCERG1O14776 1098 aaKnown RBP17.22■□□□□ 0.35
SMAD1-215ENST00000515385 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.22■□□□□ 0.35
SMAD1-215ENST00000515385 CCDC184Q52MB2 194 aa17.22■□□□□ 0.35
SMAD1-215ENST00000515385 NCOA1Q15788 1441 aa17.2■□□□□ 0.34
SMAD1-215ENST00000515385 CUX1P39880 1505 aa17.18■□□□□ 0.34
SMAD1-215ENST00000515385 CCDC7Q96M83 1385 aa17.18■□□□□ 0.34
SMAD1-215ENST00000515385 MS4A1P11836 297 aa17.17■□□□□ 0.34
SMAD1-215ENST00000515385 PTPN23Q9H3S7 1636 aa17.17■□□□□ 0.34
SMAD1-215ENST00000515385 PODXL2Q9NZ53 605 aa17.17■□□□□ 0.34
SMAD1-215ENST00000515385 AKNAQ7Z591 1439 aa17.16■□□□□ 0.34
SMAD1-215ENST00000515385 GSE1Q14687 1217 aa17.15■□□□□ 0.34
SMAD1-215ENST00000515385 DDRGK1Q96HY6 314 aa17.15■□□□□ 0.34
SMAD1-215ENST00000515385 RSPH6AQ9H0K4 717 aa17.15■□□□□ 0.34
SMAD1-215ENST00000515385 FGD6Q6ZV73 1430 aa17.14■□□□□ 0.33
SMAD1-215ENST00000515385 FYCO1Q9BQS8 1478 aa17.14■□□□□ 0.33
SMAD1-215ENST00000515385 AQRO60306 1485 aaKnown RBP eCLIP17.13■□□□□ 0.33
SMAD1-215ENST00000515385 PCF11O94913 1555 aaKnown RBP17.13■□□□□ 0.33
SMAD1-215ENST00000515385 FMN1Q68DA7 1419 aa17.13■□□□□ 0.33
SMAD1-215ENST00000515385 ABCA5Q8WWZ7 1642 aa17.12■□□□□ 0.33
SMAD1-215ENST00000515385 LAS1LQ9Y4W2 734 aaKnown RBP17.11■□□□□ 0.33
SMAD1-215ENST00000515385 BICRAQ9NZM4 1560 aa17.11■□□□□ 0.33
SMAD1-215ENST00000515385 PDE4AP27815 886 aa17.1■□□□□ 0.33
SMAD1-215ENST00000515385 IGF1RP08069 1367 aa17.1■□□□□ 0.33
SMAD1-215ENST00000515385 NAIPQ13075 1403 aa17.1■□□□□ 0.33
SMAD1-215ENST00000515385 PLEKHG5O94827 1062 aa17.09■□□□□ 0.33
SMAD1-215ENST00000515385 BACH2Q9BYV9 841 aa17.09■□□□□ 0.33
SMAD1-215ENST00000515385 CASKIN1Q8WXD9 1431 aa17.09■□□□□ 0.33
SMAD1-215ENST00000515385 NPM2Q86SE8 214 aaKnown RBP17.07■□□□□ 0.32
SMAD1-215ENST00000515385 BRPF3Q9ULD4 1205 aa17.07■□□□□ 0.32
SMAD1-215ENST00000515385 GLIPR1L2Q4G1C9 344 aa17.06■□□□□ 0.32
SMAD1-215ENST00000515385 CARMIL1Q5VZK9 1371 aa17.05■□□□□ 0.32
SMAD1-215ENST00000515385 FAM43AQ8N2R8 423 aa17.05■□□□□ 0.32
SMAD1-215ENST00000515385 POLR1AO95602 1720 aaPredicted RBP17.05■□□□□ 0.32
SMAD1-215ENST00000515385 EFCAB5A4FU69 1503 aa17.04■□□□□ 0.32
SMAD1-215ENST00000515385 FGD5Q6ZNL6 1462 aa17.04■□□□□ 0.32
SMAD1-215ENST00000515385 PTPRKQ15262 1439 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms