RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 CLASP1Q7Z460 1538 aa34.31■■■■□ 3.08
LSM6-207ENST00000515311 KIAA0586Q9BVV6 1533 aa34.28■■■■□ 3.08
LSM6-207ENST00000515311 IQGAP2Q13576 1575 aa34.22■■■■□ 3.07
LSM6-207ENST00000515311 UBTFP17480 764 aaKnown RBP34.18■■■■□ 3.06
LSM6-207ENST00000515311 EHMT2Q96KQ7 1210 aa34.18■■■■□ 3.06
LSM6-207ENST00000515311 SHROOM2Q13796 1616 aa34.15■■■■□ 3.06
LSM6-207ENST00000515311 TNIKQ9UKE5 1360 aa34.11■■■■□ 3.05
LSM6-207ENST00000515311 LOC105371045A0A1W2PR82 267 aa34.08■■■■□ 3.05
LSM6-207ENST00000515311 UGGT2Q9NYU1 1516 aa34.06■■■■□ 3.04
LSM6-207ENST00000515311 JPH4Q96JJ6 628 aa34.02■■■■□ 3.04
LSM6-207ENST00000515311 PRG4Q92954 1404 aaPredicted RBP33.93■■■■□ 3.02
LSM6-207ENST00000515311 SAMD9Q5K651 1589 aa33.92■■■■□ 3.02
LSM6-207ENST00000515311 EFCAB5A4FU69 1503 aa33.9■■■■□ 3.02
LSM6-207ENST00000515311 DISP1Q96F81 1524 aa33.9■■■■□ 3.02
LSM6-207ENST00000515311 KIAA0556O60303 1618 aa33.88■■■■□ 3.01
LSM6-207ENST00000515311 CARMIL2Q6F5E8 1435 aa33.87■■■■□ 3.01
LSM6-207ENST00000515311 ERCC6L2Q5T890 1561 aa33.85■■■■□ 3.01
LSM6-207ENST00000515311 ARHGEF11O15085 1522 aa33.84■■■■□ 3.01
LSM6-207ENST00000515311 CEP162Q5TB80 1403 aa33.82■■■■□ 3
LSM6-207ENST00000515311 CLIP1P30622 1438 aa33.79■■■■□ 3
LSM6-207ENST00000515311 RANGAP1P46060 587 aaPredicted RBP33.79■■■■□ 3
LSM6-207ENST00000515311 ARHGAP35Q9NRY4 1499 aa33.78■■■■□ 3
LSM6-207ENST00000515311 RIMBP3CA6NJZ7 1639 aa33.78■■■■□ 3
LSM6-207ENST00000515311 RIMBP3BA6NNM3 1639 aa33.78■■■■□ 3
LSM6-207ENST00000515311 RIMBP3Q9UFD9 1639 aa33.78■■■■□ 3
LSM6-207ENST00000515311 DNAJC5Q9H3Z4 198 aa33.75■■■□□ 2.99
LSM6-207ENST00000515311 FHOD3Q2V2M9 1422 aa33.65■■■□□ 2.98
LSM6-207ENST00000515311 P3H3Q8IVL6 736 aa33.64■■■□□ 2.98
LSM6-207ENST00000515311 ARAP1Q96P48 1450 aa33.63■■■□□ 2.97
LSM6-207ENST00000515311 PTPRGP23470 1445 aa33.61■■■□□ 2.97
LSM6-207ENST00000515311 FMN1Q68DA7 1419 aa33.53■■■□□ 2.96
LSM6-207ENST00000515311 ABCA8O94911 1581 aa33.47■■■□□ 2.95
LSM6-207ENST00000515311 TTBK1Q5TCY1 1321 aaPredicted RBP33.46■■■□□ 2.95
LSM6-207ENST00000515311 UACAQ9BZF9 1416 aa33.43■■■□□ 2.94
LSM6-207ENST00000515311 PLB1Q6P1J6 1458 aa33.43■■■□□ 2.94
LSM6-207ENST00000515311 RAPGEF6Q8TEU7 1601 aa33.42■■■□□ 2.94
LSM6-207ENST00000515311 ABCC2Q92887 1545 aa33.4■■■□□ 2.94
LSM6-207ENST00000515311 UHRF1BP1LA0JNW5 1464 aa33.4■■■□□ 2.94
LSM6-207ENST00000515311 CYB5RLQ6IPT4 315 aa33.39■■■□□ 2.94
LSM6-207ENST00000515311 VPS8Q8N3P4 1428 aa33.38■■■□□ 2.93
LSM6-207ENST00000515311 ADCY10Q96PN6 1610 aa33.38■■■□□ 2.93
LSM6-207ENST00000515311 PCF11O94913 1555 aaKnown RBP33.37■■■□□ 2.93
LSM6-207ENST00000515311 CASKIN1Q8WXD9 1431 aa33.35■■■□□ 2.93
LSM6-207ENST00000515311 FYCO1Q9BQS8 1478 aa33.34■■■□□ 2.93
LSM6-207ENST00000515311 HECW1Q76N89 1606 aa33.33■■■□□ 2.93
LSM6-207ENST00000515311 NUP153P49790 1475 aaKnown RBP33.29■■■□□ 2.92
LSM6-207ENST00000515311 KDM5BQ9UGL1 1544 aa33.23■■■□□ 2.91
LSM6-207ENST00000515311 LRRIQ1Q96JM4 1722 aa33.21■■■□□ 2.91
LSM6-207ENST00000515311 ZCCHC11Q5TAX3 1644 aaKnown RBP33.18■■■□□ 2.9
LSM6-207ENST00000515311 EPRSP07814 1512 aaKnown RBP33.18■■■□□ 2.9
LSM6-207ENST00000515311 CCDC18Q5T9S5 1454 aa33.17■■■□□ 2.9
LSM6-207ENST00000515311 ATP10BO94823 1461 aa33.15■■■□□ 2.9
LSM6-207ENST00000515311 ATP1B4Q9UN42 357 aaPredicted RBP33.14■■■□□ 2.9
LSM6-207ENST00000515311 CDK13Q14004 1512 aaKnown RBP33.11■■■□□ 2.89
LSM6-207ENST00000515311 NPM1P06748 294 aaKnown RBP eCLIP33.09■■■□□ 2.89
LSM6-207ENST00000515311 CFAP43Q8NDM7 1665 aa33.08■■■□□ 2.89
LSM6-207ENST00000515311 MAP3K1Q13233 1512 aa33.06■■■□□ 2.88
LSM6-207ENST00000515311 MAPKBP1O60336 1514 aa33.04■■■□□ 2.88
LSM6-207ENST00000515311 ARID3CA6NKF2 412 aa33.04■■■□□ 2.88
LSM6-207ENST00000515311 TIAM1Q13009 1591 aa33.04■■■□□ 2.88
LSM6-207ENST00000515311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.97■■■□□ 2.87
LSM6-207ENST00000515311 HNRNPUL2Q1KMD3 747 aaKnown RBP32.97■■■□□ 2.87
LSM6-207ENST00000515311 ASXL2Q76L83 1435 aa32.95■■■□□ 2.87
LSM6-207ENST00000515311 CDK11AQ9UQ88 783 aaPredicted RBP32.95■■■□□ 2.87
LSM6-207ENST00000515311 APLP2Q06481 763 aa32.93■■■□□ 2.86
LSM6-207ENST00000515311 WDR7Q9Y4E6 1490 aa32.93■■■□□ 2.86
LSM6-207ENST00000515311 MAGI3Q5TCQ9 1506 aa32.89■■■□□ 2.86
LSM6-207ENST00000515311 PLEKHD1A6NEE1 506 aa32.89■■■□□ 2.86
LSM6-207ENST00000515311 TROQ12816 1431 aaPredicted RBP32.87■■■□□ 2.85
LSM6-207ENST00000515311 EHBP1L1Q8N3D4 1523 aa32.86■■■□□ 2.85
LSM6-207ENST00000515311 LRRC9Q6ZRR7 1453 aa32.86■■■□□ 2.85
LSM6-207ENST00000515311 MTUS2Q5JR59 1369 aa32.83■■■□□ 2.85
LSM6-207ENST00000515311 KIF14Q15058 1648 aa32.79■■■□□ 2.84
LSM6-207ENST00000515311 DIP2BQ9P265 1576 aa32.75■■■□□ 2.83
LSM6-207ENST00000515311 ABCC10Q5T3U5 1492 aa32.75■■■□□ 2.83
LSM6-207ENST00000515311 KANK4Q5T7N3 995 aaPredicted RBP32.75■■■□□ 2.83
LSM6-207ENST00000515311 GLI2P10070 1586 aa32.73■■■□□ 2.83
LSM6-207ENST00000515311 SUPT6HQ7KZ85 1726 aaKnown RBP32.73■■■□□ 2.83
LSM6-207ENST00000515311 ABCA9Q8IUA7 1624 aa32.7■■■□□ 2.83
LSM6-207ENST00000515311 KIF13AQ9H1H9 1805 aa32.7■■■□□ 2.82
LSM6-207ENST00000515311 KCNH8Q96L42 1107 aa32.69■■■□□ 2.82
LSM6-207ENST00000515311 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.67■■■□□ 2.823e-11■■■■■ 27.7
LSM6-207ENST00000515311 TTC37Q6PGP7 1564 aa32.65■■■□□ 2.82
LSM6-207ENST00000515311 NCOA2Q15596 1464 aa32.63■■■□□ 2.81
LSM6-207ENST00000515311 MAP3K4Q9Y6R4 1608 aa32.62■■■□□ 2.81
LSM6-207ENST00000515311 MYO5CQ9NQX4 1742 aa32.58■■■□□ 2.81
LSM6-207ENST00000515311 FAM69CQ0P6D2 419 aa32.58■■■□□ 2.81
LSM6-207ENST00000515311 CDC42BPAQ5VT25 1732 aa32.55■■■□□ 2.8
LSM6-207ENST00000515311 ITSN2Q9NZM3 1697 aa32.53■■■□□ 2.8
LSM6-207ENST00000515311 PREX2Q70Z35 1606 aa32.53■■■□□ 2.8
LSM6-207ENST00000515311 ARAP3Q8WWN8 1544 aa32.51■■■□□ 2.8
LSM6-207ENST00000515311 CD109Q6YHK3 1445 aa32.51■■■□□ 2.79
LSM6-207ENST00000515311 CCNB3Q8WWL7 1395 aa32.5■■■□□ 2.79
LSM6-207ENST00000515311 PPARGC1BQ86YN6 1023 aaKnown RBP32.5■■■□□ 2.79
LSM6-207ENST00000515311 GPATCH8Q9UKJ3 1502 aaKnown RBP32.49■■■□□ 2.79
LSM6-207ENST00000515311 PLCH2O75038 1416 aa32.47■■■□□ 2.79
LSM6-207ENST00000515311 CDC42BPBQ9Y5S2 1711 aa32.47■■■□□ 2.79
LSM6-207ENST00000515311 TRHP20396 242 aaPredicted RBP32.46■■■□□ 2.79
LSM6-207ENST00000515311 PHLDB1Q86UU1 1377 aa32.45■■■□□ 2.78
LSM6-207ENST00000515311 MYOM3Q5VTT5 1437 aa32.44■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms