RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CTTNBP2Q8WZ74 1663 aa24.5■■□□□ 1.51
NUP54-213ENST00000513352 KIAA0586Q9BVV6 1533 aa24.47■■□□□ 1.51
NUP54-213ENST00000513352 UBTFP17480 764 aaKnown RBP24.45■■□□□ 1.5
NUP54-213ENST00000513352 IQGAP2Q13576 1575 aa24.44■■□□□ 1.5
NUP54-213ENST00000513352 DNAJC5Q9H3Z4 198 aa24.38■■□□□ 1.49
NUP54-213ENST00000513352 JPH4Q96JJ6 628 aa24.37■■□□□ 1.49
NUP54-213ENST00000513352 SHROOM2Q13796 1616 aa24.36■■□□□ 1.49
NUP54-213ENST00000513352 RANGAP1P46060 587 aaPredicted RBP24.33■■□□□ 1.49
NUP54-213ENST00000513352 PRG4Q92954 1404 aaPredicted RBP24.32■■□□□ 1.48
NUP54-213ENST00000513352 ARHGEF11O15085 1522 aa24.31■■□□□ 1.48
NUP54-213ENST00000513352 RIMBP3CA6NJZ7 1639 aa24.3■■□□□ 1.48
NUP54-213ENST00000513352 RIMBP3BA6NNM3 1639 aa24.3■■□□□ 1.48
NUP54-213ENST00000513352 RIMBP3Q9UFD9 1639 aa24.3■■□□□ 1.48
NUP54-213ENST00000513352 LOC105371045A0A1W2PR82 267 aa24.28■■□□□ 1.48
NUP54-213ENST00000513352 UGGT2Q9NYU1 1516 aa24.27■■□□□ 1.48
NUP54-213ENST00000513352 ERCC6L2Q5T890 1561 aa24.27■■□□□ 1.48
NUP54-213ENST00000513352 AEBP2Q6ZN18 517 aaPredicted RBP24.25■■□□□ 1.47
NUP54-213ENST00000513352 CARMIL2Q6F5E8 1435 aa24.24■■□□□ 1.47
NUP54-213ENST00000513352 TNIKQ9UKE5 1360 aa24.22■■□□□ 1.47
NUP54-213ENST00000513352 KIAA0556O60303 1618 aa24.2■■□□□ 1.46
NUP54-213ENST00000513352 DISP1Q96F81 1524 aa24.19■■□□□ 1.46
NUP54-213ENST00000513352 TTBK1Q5TCY1 1321 aaPredicted RBP24.18■■□□□ 1.46
NUP54-213ENST00000513352 P3H3Q8IVL6 736 aa24.16■■□□□ 1.46
NUP54-213ENST00000513352 ARAP1Q96P48 1450 aa24.14■■□□□ 1.46
NUP54-213ENST00000513352 SAMD9Q5K651 1589 aa24.13■■□□□ 1.45
NUP54-213ENST00000513352 EFCAB5A4FU69 1503 aa24.12■■□□□ 1.45
NUP54-213ENST00000513352 CYB5RLQ6IPT4 315 aa24.09■■□□□ 1.45
NUP54-213ENST00000513352 PTPRGP23470 1445 aa24.07■■□□□ 1.44
NUP54-213ENST00000513352 CLIP1P30622 1438 aa24.07■■□□□ 1.44
NUP54-213ENST00000513352 FHOD3Q2V2M9 1422 aa24.07■■□□□ 1.44
NUP54-213ENST00000513352 CEP162Q5TB80 1403 aa24.06■■□□□ 1.44
NUP54-213ENST00000513352 ARHGAP35Q9NRY4 1499 aa24.05■■□□□ 1.44
NUP54-213ENST00000513352 PLB1Q6P1J6 1458 aa23.91■■□□□ 1.42
NUP54-213ENST00000513352 UACAQ9BZF9 1416 aa23.91■■□□□ 1.42
NUP54-213ENST00000513352 ADCY10Q96PN6 1610 aa23.9■■□□□ 1.42
NUP54-213ENST00000513352 FMN1Q68DA7 1419 aa23.89■■□□□ 1.41
NUP54-213ENST00000513352 RAPGEF6Q8TEU7 1601 aa23.88■■□□□ 1.41
NUP54-213ENST00000513352 ABCA8O94911 1581 aa23.87■■□□□ 1.41
NUP54-213ENST00000513352 ABCC2Q92887 1545 aa23.87■■□□□ 1.41
NUP54-213ENST00000513352 ATP1B4Q9UN42 357 aaPredicted RBP23.84■■□□□ 1.41
NUP54-213ENST00000513352 UHRF1BP1LA0JNW5 1464 aa23.83■■□□□ 1.41
NUP54-213ENST00000513352 ARID3CA6NKF2 412 aa23.81■■□□□ 1.4
NUP54-213ENST00000513352 NPM1P06748 294 aaKnown RBP eCLIP23.81■■□□□ 1.4
NUP54-213ENST00000513352 PCF11O94913 1555 aaKnown RBP23.8■■□□□ 1.4
NUP54-213ENST00000513352 HECW1Q76N89 1606 aa23.77■■□□□ 1.4
NUP54-213ENST00000513352 ZCCHC11Q5TAX3 1644 aaKnown RBP23.75■■□□□ 1.39
NUP54-213ENST00000513352 NUP153P49790 1475 aaKnown RBP23.75■■□□□ 1.39
NUP54-213ENST00000513352 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.73■■□□□ 1.39
NUP54-213ENST00000513352 HNRNPUL2Q1KMD3 747 aaKnown RBP23.73■■□□□ 1.39
NUP54-213ENST00000513352 CASKIN1Q8WXD9 1431 aa23.73■■□□□ 1.39
NUP54-213ENST00000513352 FYCO1Q9BQS8 1478 aa23.73■■□□□ 1.39
NUP54-213ENST00000513352 VPS8Q8N3P4 1428 aa23.72■■□□□ 1.39
NUP54-213ENST00000513352 KDM5BQ9UGL1 1544 aa23.72■■□□□ 1.39
NUP54-213ENST00000513352 CDK13Q14004 1512 aaKnown RBP23.68■■□□□ 1.38
NUP54-213ENST00000513352 ATP10BO94823 1461 aa23.68■■□□□ 1.38
NUP54-213ENST00000513352 LRRIQ1Q96JM4 1722 aa23.66■■□□□ 1.38
NUP54-213ENST00000513352 EPRSP07814 1512 aaKnown RBP23.65■■□□□ 1.38
NUP54-213ENST00000513352 CCDC18Q5T9S5 1454 aa23.63■■□□□ 1.37
NUP54-213ENST00000513352 MAPKBP1O60336 1514 aa23.63■■□□□ 1.37
NUP54-213ENST00000513352 ASXL2Q76L83 1435 aa23.62■■□□□ 1.37
NUP54-213ENST00000513352 WDR7Q9Y4E6 1490 aa23.56■■□□□ 1.36
NUP54-213ENST00000513352 PLEKHD1A6NEE1 506 aa23.55■■□□□ 1.36
NUP54-213ENST00000513352 CDK11AQ9UQ88 783 aaPredicted RBP23.54■■□□□ 1.36
NUP54-213ENST00000513352 TRHP20396 242 aaPredicted RBP23.53■■□□□ 1.36
NUP54-213ENST00000513352 APLP2Q06481 763 aa23.53■■□□□ 1.36
NUP54-213ENST00000513352 CFAP43Q8NDM7 1665 aa23.53■■□□□ 1.36
NUP54-213ENST00000513352 KCNH8Q96L42 1107 aa23.52■■□□□ 1.36
NUP54-213ENST00000513352 TIAM1Q13009 1591 aa23.49■■□□□ 1.35
NUP54-213ENST00000513352 DIP2BQ9P265 1576 aa23.48■■□□□ 1.35
NUP54-213ENST00000513352 ABCC10Q5T3U5 1492 aa23.47■■□□□ 1.35
NUP54-213ENST00000513352 FAM69CQ0P6D2 419 aa23.46■■□□□ 1.35
NUP54-213ENST00000513352 MTUS2Q5JR59 1369 aa23.46■■□□□ 1.35
NUP54-213ENST00000513352 KIF13AQ9H1H9 1805 aa23.45■■□□□ 1.34
NUP54-213ENST00000513352 TROQ12816 1431 aaPredicted RBP23.45■■□□□ 1.34
NUP54-213ENST00000513352 MAGI3Q5TCQ9 1506 aa23.44■■□□□ 1.34
NUP54-213ENST00000513352 KIF14Q15058 1648 aa23.42■■□□□ 1.34
NUP54-213ENST00000513352 MAP3K1Q13233 1512 aa23.41■■□□□ 1.34
NUP54-213ENST00000513352 EHBP1L1Q8N3D4 1523 aa23.41■■□□□ 1.34
NUP54-213ENST00000513352 GLI2P10070 1586 aa23.38■■□□□ 1.33
NUP54-213ENST00000513352 TSPOAP1O95153 1857 aa23.37■■□□□ 1.33
NUP54-213ENST00000513352 LRRC9Q6ZRR7 1453 aa23.36■■□□□ 1.33
NUP54-213ENST00000513352 ABCA9Q8IUA7 1624 aa23.35■■□□□ 1.33
NUP54-213ENST00000513352 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.34■■□□□ 1.335e-6■□□□□ 11
NUP54-213ENST00000513352 KANK4Q5T7N3 995 aaPredicted RBP23.34■■□□□ 1.33
NUP54-213ENST00000513352 TTC37Q6PGP7 1564 aa23.34■■□□□ 1.33
NUP54-213ENST00000513352 SUPT6HQ7KZ85 1726 aaKnown RBP23.33■■□□□ 1.32
NUP54-213ENST00000513352 MAP3K4Q9Y6R4 1608 aa23.33■■□□□ 1.32
NUP54-213ENST00000513352 CD109Q6YHK3 1445 aa23.31■■□□□ 1.32
NUP54-213ENST00000513352 PPARGC1BQ86YN6 1023 aaKnown RBP23.28■■□□□ 1.32
NUP54-213ENST00000513352 MYO5CQ9NQX4 1742 aa23.28■■□□□ 1.32
NUP54-213ENST00000513352 NCOA2Q15596 1464 aa23.25■■□□□ 1.31
NUP54-213ENST00000513352 CCNB3Q8WWL7 1395 aa23.24■■□□□ 1.31
NUP54-213ENST00000513352 PPRC1Q5VV67 1664 aaKnown RBP23.23■■□□□ 1.31
NUP54-213ENST00000513352 CDC42BPAQ5VT25 1732 aa23.22■■□□□ 1.31
NUP54-213ENST00000513352 TEX14Q8IWB6 1497 aa23.21■■□□□ 1.31
NUP54-213ENST00000513352 PREX2Q70Z35 1606 aa23.2■■□□□ 1.3
NUP54-213ENST00000513352 ARHGAP5Q13017 1502 aa23.2■■□□□ 1.3
NUP54-213ENST00000513352 ITSN2Q9NZM3 1697 aa23.19■■□□□ 1.3
NUP54-213ENST00000513352 PLCH2O75038 1416 aa23.17■■□□□ 1.3
NUP54-213ENST00000513352 CDC42BPBQ9Y5S2 1711 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms