RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ERICH6BQ5W0A0 696 aa10.02□□□□□ -0.81
LIMCH1-207ENST00000508466 MYT1LQ9UL68 1186 aa10.02□□□□□ -0.81
LIMCH1-207ENST00000508466 ANP32AP39687 249 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-207ENST00000508466 SKAP1Q86WV1 359 aa10.01□□□□□ -0.81
LIMCH1-207ENST00000508466 VSIG10Q8N0Z9 540 aa10.01□□□□□ -0.81
LIMCH1-207ENST00000508466 ARID4BQ4LE39 1312 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-207ENST00000508466 PPP4R2Q9NY27 417 aa10.01□□□□□ -0.81
LIMCH1-207ENST00000508466 ABCC8Q09428 1581 aa10.01□□□□□ -0.81
LIMCH1-207ENST00000508466 CCDC88BA6NC98 1476 aa10□□□□□ -0.81
LIMCH1-207ENST00000508466 PPP1R15AO75807 674 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-207ENST00000508466 IPO9Q96P70 1041 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-207ENST00000508466 WRNQ14191 1432 aaPredicted RBP eCLIP9.98□□□□□ -0.81
LIMCH1-207ENST00000508466 ZMYND15Q9H091 742 aa9.95□□□□□ -0.82
LIMCH1-207ENST00000508466 TNIKQ9UKE5 1360 aa9.93□□□□□ -0.82
LIMCH1-207ENST00000508466 A0A0U1RQG5 324 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-207ENST00000508466 PODXL2Q9NZ53 605 aa9.91□□□□□ -0.82
LIMCH1-207ENST00000508466 FRAT1Q92837 279 aaPredicted RBP9.91□□□□□ -0.82
LIMCH1-207ENST00000508466 POLR3GLQ9BT43 218 aa9.91□□□□□ -0.82
LIMCH1-207ENST00000508466 ATP1B4Q9UN42 357 aaPredicted RBP9.9□□□□□ -0.83
LIMCH1-207ENST00000508466 CECR2Q9BXF3 1484 aa9.89□□□□□ -0.83
LIMCH1-207ENST00000508466 FAM50AQ14320 339 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-207ENST00000508466 CCER2I3L3R5 266 aa9.87□□□□□ -0.83
LIMCH1-207ENST00000508466 DCAF11Q8TEB1 546 aa9.86□□□□□ -0.83
LIMCH1-207ENST00000508466 CLIP1P30622 1438 aa9.86□□□□□ -0.83
LIMCH1-207ENST00000508466 ABCC9O60706 1549 aa9.85□□□□□ -0.83
LIMCH1-207ENST00000508466 MRS2Q9HD23 443 aa9.85□□□□□ -0.83
LIMCH1-207ENST00000508466 GSE1Q14687 1217 aa9.84□□□□□ -0.83
LIMCH1-207ENST00000508466 WDR97A6NE52 1622 aa9.84□□□□□ -0.83
LIMCH1-207ENST00000508466 SCRIBQ14160 1630 aa9.84□□□□□ -0.83
LIMCH1-207ENST00000508466 WASHC2AQ641Q2 1341 aa9.84□□□□□ -0.84
LIMCH1-207ENST00000508466 AKNAQ7Z591 1439 aa9.83□□□□□ -0.84
LIMCH1-207ENST00000508466 NACADO15069 1562 aa9.83□□□□□ -0.84
LIMCH1-207ENST00000508466 NFKBIBQ15653 356 aa9.81□□□□□ -0.84
LIMCH1-207ENST00000508466 RAB3GAP2Q9H2M9 1393 aa9.81□□□□□ -0.84
LIMCH1-207ENST00000508466 FRAT2O75474 233 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-207ENST00000508466 NAP1L5Q96NT1 182 aaPredicted RBP9.8□□□□□ -0.84
LIMCH1-207ENST00000508466 PLPPR3Q6T4P5 718 aa9.79□□□□□ -0.84
LIMCH1-207ENST00000508466 ARID3AQ99856 593 aa9.79□□□□□ -0.84
LIMCH1-207ENST00000508466 PDE4AP27815 886 aa9.78□□□□□ -0.84
LIMCH1-207ENST00000508466 RRAGDQ9NQL2 400 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-207ENST00000508466 EXOC6Q8TAG9 804 aa9.76□□□□□ -0.85
LIMCH1-207ENST00000508466 WASHC2CQ9Y4E1 1318 aa9.76□□□□□ -0.85
LIMCH1-207ENST00000508466 MROH2BQ7Z745 1585 aa9.75□□□□□ -0.85
LIMCH1-207ENST00000508466 PLIN1O60240 522 aa9.75□□□□□ -0.85
LIMCH1-207ENST00000508466 DAXXQ9UER7 740 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-207ENST00000508466 P3H3Q8IVL6 736 aa9.74□□□□□ -0.85
LIMCH1-207ENST00000508466 RSPH6AQ9H0K4 717 aa9.74□□□□□ -0.85
LIMCH1-207ENST00000508466 VPS8Q8N3P4 1428 aa9.73□□□□□ -0.85
LIMCH1-207ENST00000508466 GOLGA3Q08378 1498 aa9.72□□□□□ -0.85
LIMCH1-207ENST00000508466 HSPA5P11021 654 aaKnown RBP9.72□□□□□ -0.85
LIMCH1-207ENST00000508466 HSP90AA2PQ14568 343 aaPredicted RBP9.72□□□□□ -0.85
LIMCH1-207ENST00000508466 WIZO95785 1651 aa9.72□□□□□ -0.85
LIMCH1-207ENST00000508466 GLIPR1L2Q4G1C9 344 aa9.71□□□□□ -0.85
LIMCH1-207ENST00000508466 GZF1Q9H116 711 aaPredicted RBP9.71□□□□□ -0.85
LIMCH1-207ENST00000508466 POGKQ9P215 609 aa9.71□□□□□ -0.85
LIMCH1-207ENST00000508466 PPM1GO15355 546 aaPredicted RBP9.71□□□□□ -0.86
LIMCH1-207ENST00000508466 SPRYD3Q8NCJ5 442 aa9.7□□□□□ -0.86
LIMCH1-207ENST00000508466 ADRA2BP18089 450 aa9.68□□□□□ -0.86
LIMCH1-207ENST00000508466 CCNB3Q8WWL7 1395 aa9.68□□□□□ -0.86
LIMCH1-207ENST00000508466 TONSLQ96HA7 1378 aa9.68□□□□□ -0.86
LIMCH1-207ENST00000508466 FOXD1Q16676 465 aa9.68□□□□□ -0.86
LIMCH1-207ENST00000508466 RAPGEF2Q9Y4G8 1499 aa9.67□□□□□ -0.86
LIMCH1-207ENST00000508466 BACH2Q9BYV9 841 aa9.67□□□□□ -0.86
LIMCH1-207ENST00000508466 SLKQ9H2G2 1235 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-207ENST00000508466 USP35Q9P2H5 1018 aa9.67□□□□□ -0.86
LIMCH1-207ENST00000508466 PRKRIP1Q9H875 184 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-207ENST00000508466 MAPKBP1O60336 1514 aa9.66□□□□□ -0.86
LIMCH1-207ENST00000508466 PPP6R1Q9UPN7 881 aa9.66□□□□□ -0.86
LIMCH1-207ENST00000508466 RBM10P98175 930 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-207ENST00000508466 RGS3P49796 1198 aa9.65□□□□□ -0.86
LIMCH1-207ENST00000508466 HSP90AA1P07900 732 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-207ENST00000508466 FAM43AQ8N2R8 423 aa9.64□□□□□ -0.87
LIMCH1-207ENST00000508466 PANK2Q9BZ23 570 aa9.64□□□□□ -0.87
LIMCH1-207ENST00000508466 ZNF326Q5BKZ1 582 aaKnown RBP9.64□□□□□ -0.87
LIMCH1-207ENST00000508466 ZBED9Q6R2W3 1325 aa9.63□□□□□ -0.87
LIMCH1-207ENST00000508466 AMER1Q5JTC6 1135 aaPredicted RBP9.62□□□□□ -0.87
LIMCH1-207ENST00000508466 PNNQ9H307 717 aaKnown RBP9.62□□□□□ -0.87
LIMCH1-207ENST00000508466 NUDCQ9Y266 331 aa9.62□□□□□ -0.87
LIMCH1-207ENST00000508466 CHIC2Q9UKJ5 165 aa9.62□□□□□ -0.87
LIMCH1-207ENST00000508466 ZBTB7CA1YPR0 619 aa9.61□□□□□ -0.87
LIMCH1-207ENST00000508466 CDCA7LQ96GN5 454 aa9.6□□□□□ -0.87
LIMCH1-207ENST00000508466 SETD5Q9C0A6 1442 aa9.6□□□□□ -0.87
LIMCH1-207ENST00000508466 KIF21BO75037 1637 aa9.59□□□□□ -0.87
LIMCH1-207ENST00000508466 TCERG1O14776 1098 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-207ENST00000508466 C20orf194Q5TEA3 1177 aa9.57□□□□□ -0.88
LIMCH1-207ENST00000508466 EEA1Q15075 1411 aa9.57□□□□□ -0.88
LIMCH1-207ENST00000508466 EIF4G2P78344 907 aaKnown RBP eCLIP9.57□□□□□ -0.88
LIMCH1-207ENST00000508466 RRP7BPQ9NSQ0 103 aa9.56□□□□□ -0.88
LIMCH1-207ENST00000508466 TMC1Q8TDI8 760 aa9.56□□□□□ -0.88
LIMCH1-207ENST00000508466 PRDM10Q9NQV6 1147 aa9.56□□□□□ -0.88
LIMCH1-207ENST00000508466 CRBNQ96SW2 442 aa9.55□□□□□ -0.88
LIMCH1-207ENST00000508466 CEP164Q9UPV0 1460 aa9.55□□□□□ -0.88
LIMCH1-207ENST00000508466 RRP1P56182 461 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-207ENST00000508466 XRCC6P12956 609 aaKnown RBP eCLIP9.54□□□□□ -0.88
LIMCH1-207ENST00000508466 ZHX1Q9UKY1 873 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-207ENST00000508466 RCAN3Q9UKA8 241 aa9.53□□□□□ -0.88
LIMCH1-207ENST00000508466 DDRGK1Q96HY6 314 aa9.53□□□□□ -0.88
LIMCH1-207ENST00000508466 PHLDB1Q86UU1 1377 aa9.52□□□□□ -0.89
LIMCH1-207ENST00000508466 ARAP1Q96P48 1450 aa9.52□□□□□ -0.89
LIMCH1-207ENST00000508466 MAPK8IP2Q13387 824 aaPredicted RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms