RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PPARGC1BQ86YN6 1023 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-207ENST00000508466 AEBP2Q6ZN18 517 aaPredicted RBP12.46□□□□□ -0.41
LIMCH1-207ENST00000508466 HRCP23327 699 aa12.41□□□□□ -0.42
LIMCH1-207ENST00000508466 PCGF6Q9BYE7 350 aa12.37□□□□□ -0.43
LIMCH1-207ENST00000508466 NISCHQ9Y2I1 1504 aa12.19□□□□□ -0.46
LIMCH1-207ENST00000508466 SCAF1Q9H7N4 1312 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-207ENST00000508466 PELP1Q8IZL8 1130 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-207ENST00000508466 SUPT5HO00267 1087 aaKnown RBP12.11□□□□□ -0.47
LIMCH1-207ENST00000508466 CHIC1Q5VXU3 224 aa12.02□□□□□ -0.49
LIMCH1-207ENST00000508466 SHROOM4Q9ULL8 1493 aa12□□□□□ -0.49
LIMCH1-207ENST00000508466 LOC105371045A0A1W2PR82 267 aa11.78□□□□□ -0.52
LIMCH1-207ENST00000508466 MYO15BQ96JP2 1530 aa11.75□□□□□ -0.53
LIMCH1-207ENST00000508466 NEUROD1Q13562 356 aa11.71□□□□□ -0.54
LIMCH1-207ENST00000508466 GTF3C3Q9Y5Q9 886 aa11.7□□□□□ -0.54
LIMCH1-207ENST00000508466 EHMT2Q96KQ7 1210 aa11.66□□□□□ -0.54
LIMCH1-207ENST00000508466 MYT1Q01538 1121 aa11.57□□□□□ -0.56
LIMCH1-207ENST00000508466 ACIN1Q9UKV3 1341 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-207ENST00000508466 YTHDC1Q96MU7 727 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-207ENST00000508466 TRIM26Q12899 539 aaPredicted RBP11.49□□□□□ -0.57
LIMCH1-207ENST00000508466 BCL11AQ9H165 835 aa11.38□□□□□ -0.59
LIMCH1-207ENST00000508466 FAM9AQ8IZU1 332 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-207ENST00000508466 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-207ENST00000508466 TTBK1Q5TCY1 1321 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-207ENST00000508466 CENPBP07199 599 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-207ENST00000508466 DIEXFQ68CQ4 756 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-207ENST00000508466 ZEB1P37275 1124 aaPredicted RBP11.29□□□□□ -0.6
LIMCH1-207ENST00000508466 DCAF8L2P0C7V8 631 aa11.26□□□□□ -0.61
LIMCH1-207ENST00000508466 CCER1Q8TC90 406 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-207ENST00000508466 CSRNP3Q8WYN3 585 aa11.15□□□□□ -0.62
LIMCH1-207ENST00000508466 PRKCSHP14314 528 aaPredicted RBP11.13□□□□□ -0.63
LIMCH1-207ENST00000508466 DCAF1Q9Y4B6 1507 aa11.13□□□□□ -0.63
LIMCH1-207ENST00000508466 MIER1Q8N108 512 aa11.07□□□□□ -0.64
LIMCH1-207ENST00000508466 BCANQ96GW7 911 aa11.04□□□□□ -0.64
LIMCH1-207ENST00000508466 ANP32EQ9BTT0 268 aa11.04□□□□□ -0.64
LIMCH1-207ENST00000508466 CCDC180Q9P1Z9 1646 aa10.97□□□□□ -0.65
LIMCH1-207ENST00000508466 TSHZ2Q9NRE2 1034 aa10.96□□□□□ -0.66
LIMCH1-207ENST00000508466 SUPT16HQ9Y5B9 1047 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-207ENST00000508466 TRIM41Q8WV44 630 aa10.88□□□□□ -0.67
LIMCH1-207ENST00000508466 ZNF316A6NFI3 1004 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-207ENST00000508466 PHF23Q9BUL5 403 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-207ENST00000508466 ITGAEP38570 1179 aa10.83□□□□□ -0.68
LIMCH1-207ENST00000508466 ANO8Q9HCE9 1232 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-207ENST00000508466 CCDC136Q96JN2 1154 aa10.78□□□□□ -0.68
LIMCH1-207ENST00000508466 HNRNPUL2Q1KMD3 747 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-207ENST00000508466 KCNH8Q96L42 1107 aa10.75□□□□□ -0.69
LIMCH1-207ENST00000508466 FKBP8Q14318 412 aa10.7□□□□□ -0.7
LIMCH1-207ENST00000508466 RBM19Q9Y4C8 960 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-207ENST00000508466 MSH5O43196 834 aa10.68□□□□□ -0.7
LIMCH1-207ENST00000508466 RTN4Q9NQC3 1192 aaKnown RBP10.66□□□□□ -0.7
LIMCH1-207ENST00000508466 SALL2Q9Y467 1007 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-207ENST00000508466 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-207ENST00000508466 ERICH6Q7L0X2 663 aa10.61□□□□□ -0.71
LIMCH1-207ENST00000508466 IRX6P78412 446 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-207ENST00000508466 NBR1Q14596 966 aa10.6□□□□□ -0.71
LIMCH1-207ENST00000508466 RANGAP1P46060 587 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-207ENST00000508466 DEKP35659 375 aaKnown RBP10.56□□□□□ -0.72
LIMCH1-207ENST00000508466 TRIM52Q96A61 297 aa10.54□□□□□ -0.72
LIMCH1-207ENST00000508466 HIRIP3Q9BW71 556 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-207ENST00000508466 IL27Q8NEV9 243 aa10.47□□□□□ -0.73
LIMCH1-207ENST00000508466 NEFLP07196 543 aa10.43□□□□□ -0.74
LIMCH1-207ENST00000508466 EIF5BO60841 1220 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-207ENST00000508466 UBTFP17480 764 aaKnown RBP10.42□□□□□ -0.74
LIMCH1-207ENST00000508466 DDX10Q13206 875 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-207ENST00000508466 APLP2Q06481 763 aa10.37□□□□□ -0.75
LIMCH1-207ENST00000508466 PAK3O75914 559 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-207ENST00000508466 ZCCHC6Q5VYS8 1495 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-207ENST00000508466 SENP3-EIF4A1A0A087X0R7 540 aa10.36□□□□□ -0.75
LIMCH1-207ENST00000508466 CDK11AQ9UQ88 783 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-207ENST00000508466 CNGB1Q14028 1251 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-207ENST00000508466 B4GALNT3Q6L9W6 998 aa10.27□□□□□ -0.76
LIMCH1-207ENST00000508466 CLSPNQ9HAW4 1339 aa10.27□□□□□ -0.76
LIMCH1-207ENST00000508466 TIMELESSQ9UNS1 1208 aa10.27□□□□□ -0.77
LIMCH1-207ENST00000508466 NPM2Q86SE8 214 aaKnown RBP10.22□□□□□ -0.77
LIMCH1-207ENST00000508466 SIN3AQ96ST3 1273 aa10.21□□□□□ -0.77
LIMCH1-207ENST00000508466 BAZ1BQ9UIG0 1483 aaKnown RBP10.21□□□□□ -0.77
LIMCH1-207ENST00000508466 LAS1LQ9Y4W2 734 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-207ENST00000508466 FANCIQ9NVI1 1328 aa10.2□□□□□ -0.78
LIMCH1-207ENST00000508466 HNRNPUQ00839 825 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMCH1-207ENST00000508466 RTL5Q5HYW3 569 aaPredicted RBP10.19□□□□□ -0.78
LIMCH1-207ENST00000508466 NOP58Q9Y2X3 529 aaKnown RBP10.19□□□□□ -0.78
LIMCH1-207ENST00000508466 CEP162Q5TB80 1403 aa10.18□□□□□ -0.78
LIMCH1-207ENST00000508466 UBE2Q2Q8WVN8 375 aa10.18□□□□□ -0.78
LIMCH1-207ENST00000508466 PLEKHG5O94827 1062 aa10.18□□□□□ -0.78
LIMCH1-207ENST00000508466 BRPF3Q9ULD4 1205 aa10.17□□□□□ -0.78
LIMCH1-207ENST00000508466 SENP3Q9H4L4 574 aaPredicted RBP10.15□□□□□ -0.79
LIMCH1-207ENST00000508466 RB1CC1Q8TDY2 1594 aa10.14□□□□□ -0.79
LIMCH1-207ENST00000508466 RSF1Q96T23 1441 aaPredicted RBP10.14□□□□□ -0.79
LIMCH1-207ENST00000508466 C11orf95C9JLR9 678 aaPredicted RBP10.1□□□□□ -0.79
LIMCH1-207ENST00000508466 ANP32CO43423 234 aa10.09□□□□□ -0.79
LIMCH1-207ENST00000508466 PKNOX2Q96KN3 472 aa10.08□□□□□ -0.8
LIMCH1-207ENST00000508466 ZBTB47Q9UFB7 747 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-207ENST00000508466 SOGA1O94964 1423 aa10.08□□□□□ -0.8
LIMCH1-207ENST00000508466 NEFMP07197 916 aa10.08□□□□□ -0.8
LIMCH1-207ENST00000508466 DHX57Q6P158 1386 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-207ENST00000508466 FAM9BQ8IZU0 186 aa10.06□□□□□ -0.8
LIMCH1-207ENST00000508466 RUSC2Q8N2Y8 1516 aa10.05□□□□□ -0.8
LIMCH1-207ENST00000508466 CCDC184Q52MB2 194 aa10.04□□□□□ -0.8
LIMCH1-207ENST00000508466 ARXQ96QS3 562 aa10.03□□□□□ -0.8
LIMCH1-207ENST00000508466 SLC4A3P48751 1232 aa10.03□□□□□ -0.8
LIMCH1-207ENST00000508466 KANK4Q5T7N3 995 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms