RNA–Protein interactions for RNA: ENST00000506783.5

PHF3-208, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 3,700 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-208ENST00000506783 VPS8Q8N3P4 1428 aa13.53□□□□□ -0.24
PHF3-208ENST00000506783 ZNF777Q9ULD5 760 aaPredicted RBP13.53□□□□□ -0.24
PHF3-208ENST00000506783 CC2D2AQ9P2K1 1620 aa13.52□□□□□ -0.24
PHF3-208ENST00000506783 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
PHF3-208ENST00000506783 DHX57Q6P158 1386 aaKnown RBP13.49□□□□□ -0.25
PHF3-208ENST00000506783 CUX2O14529 1486 aa13.46□□□□□ -0.25
PHF3-208ENST00000506783 MYT1LQ9UL68 1186 aa13.46□□□□□ -0.26
PHF3-208ENST00000506783 RAB3GAP2Q9H2M9 1393 aa13.45□□□□□ -0.26
PHF3-208ENST00000506783 TSHZ2Q9NRE2 1034 aa13.45□□□□□ -0.26
PHF3-208ENST00000506783 CCNB3Q8WWL7 1395 aa13.45□□□□□ -0.26
PHF3-208ENST00000506783 EEA1Q15075 1411 aa13.44□□□□□ -0.26
PHF3-208ENST00000506783 TONSLQ96HA7 1378 aa13.43□□□□□ -0.26
PHF3-208ENST00000506783 KIF27Q86VH2 1401 aa13.41□□□□□ -0.26
PHF3-208ENST00000506783 SYNJ1O43426 1573 aa13.41□□□□□ -0.26
PHF3-208ENST00000506783 PDS5BQ9NTI5 1447 aa13.41□□□□□ -0.26
PHF3-208ENST00000506783 SENP3Q9H4L4 574 aaPredicted RBP13.4□□□□□ -0.26
PHF3-208ENST00000506783 FANCD2Q9BXW9 1451 aa13.4□□□□□ -0.26
PHF3-208ENST00000506783 KDM2AQ9Y2K7 1162 aa13.39□□□□□ -0.27
PHF3-208ENST00000506783 CARMIL1Q5VZK9 1371 aa13.36□□□□□ -0.27
PHF3-208ENST00000506783 MTUS2Q5JR59 1369 aa13.35□□□□□ -0.27
PHF3-208ENST00000506783 RAD54L2Q9Y4B4 1467 aa13.35□□□□□ -0.27
PHF3-208ENST00000506783 B4GALNT3Q6L9W6 998 aa13.34□□□□□ -0.27
PHF3-208ENST00000506783 ARAP1Q96P48 1450 aa13.34□□□□□ -0.27
PHF3-208ENST00000506783 NBR1Q14596 966 aa13.34□□□□□ -0.27
PHF3-208ENST00000506783 MRS2Q9HD23 443 aa13.33□□□□□ -0.28
PHF3-208ENST00000506783 NPM2Q86SE8 214 aaKnown RBP13.33□□□□□ -0.28
PHF3-208ENST00000506783 KIF21BO75037 1637 aa13.32□□□□□ -0.28
PHF3-208ENST00000506783 FHOD3Q2V2M9 1422 aa13.32□□□□□ -0.28
PHF3-208ENST00000506783 MYT1Q01538 1121 aa13.3□□□□□ -0.28
PHF3-208ENST00000506783 RBM19Q9Y4C8 960 aaKnown RBP13.29□□□□□ -0.28
PHF3-208ENST00000506783 CDK11AQ9UQ88 783 aaPredicted RBP13.29□□□□□ -0.28
PHF3-208ENST00000506783 PHLDB1Q86UU1 1377 aa13.28□□□□□ -0.28
PHF3-208ENST00000506783 CFTRP13569 1480 aa13.28□□□□□ -0.28
PHF3-208ENST00000506783 CCDC184Q52MB2 194 aa13.27□□□□□ -0.29
PHF3-208ENST00000506783 PPP1R15AO75807 674 aaPredicted RBP13.26□□□□□ -0.29
PHF3-208ENST00000506783 HSPA5P11021 654 aaKnown RBP13.25□□□□□ -0.29
PHF3-208ENST00000506783 FGD5Q6ZNL6 1462 aa13.24□□□□□ -0.29
PHF3-208ENST00000506783 RGL3Q3MIN7 710 aa13.24□□□□□ -0.29
PHF3-208ENST00000506783 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.24□□□□□ -0.291e-6■■□□□ 13.7
PHF3-208ENST00000506783 SLC4A1APQ9BWU0 796 aaKnown RBP13.24□□□□□ -0.29
PHF3-208ENST00000506783 SETD5Q9C0A6 1442 aa13.24□□□□□ -0.29
PHF3-208ENST00000506783 AQRO60306 1485 aaKnown RBP eCLIP13.24□□□□□ -0.293e-7■■■□□ 16.4
PHF3-208ENST00000506783 ANP32EQ9BTT0 268 aa13.23□□□□□ -0.29
PHF3-208ENST00000506783 BCL11AQ9H165 835 aa13.21□□□□□ -0.29
PHF3-208ENST00000506783 HMGXB3Q12766 1538 aa13.21□□□□□ -0.3
PHF3-208ENST00000506783 IGF1RP08069 1367 aa13.2□□□□□ -0.3
PHF3-208ENST00000506783 EIF4G2P78344 907 aaKnown RBP eCLIP13.19□□□□□ -0.3
PHF3-208ENST00000506783 L3MBTL2Q969R5 705 aa13.18□□□□□ -0.3
PHF3-208ENST00000506783 ZNF644Q9H582 1327 aaPredicted RBP13.17□□□□□ -0.3
PHF3-208ENST00000506783 ARHGAP35Q9NRY4 1499 aa13.16□□□□□ -0.3
PHF3-208ENST00000506783 CUX1P39880 1505 aa13.15□□□□□ -0.3
PHF3-208ENST00000506783 CLSPNQ9HAW4 1339 aa13.14□□□□□ -0.31
PHF3-208ENST00000506783 PEG3Q9GZU2 1588 aa13.12□□□□□ -0.31
PHF3-208ENST00000506783 WDR97A6NE52 1622 aa13.12□□□□□ -0.31
PHF3-208ENST00000506783 TMC1Q8TDI8 760 aa13.12□□□□□ -0.31
PHF3-208ENST00000506783 CCDC136Q96JN2 1154 aa13.11□□□□□ -0.31
PHF3-208ENST00000506783 JPH4Q96JJ6 628 aa13.1□□□□□ -0.31
PHF3-208ENST00000506783 C11orf95C9JLR9 678 aaPredicted RBP13.1□□□□□ -0.31
PHF3-208ENST00000506783 NPM1P06748 294 aaKnown RBP eCLIP13.1□□□□□ -0.31
PHF3-208ENST00000506783 MPHOSPH9Q99550 1183 aa13.09□□□□□ -0.31
PHF3-208ENST00000506783 TOPBP1Q92547 1522 aa13.08□□□□□ -0.32
PHF3-208ENST00000506783 POLA1P09884 1462 aaPredicted RBP13.08□□□□□ -0.32
PHF3-208ENST00000506783 GAPVD1Q14C86 1478 aa13.08□□□□□ -0.32
PHF3-208ENST00000506783 PRXQ9BXM0 1461 aa13.06□□□□□ -0.32
PHF3-208ENST00000506783 PLEKHD1A6NEE1 506 aa13.06□□□□□ -0.32
PHF3-208ENST00000506783 RTN4Q9NQC3 1192 aaKnown RBP13.06□□□□□ -0.32
PHF3-208ENST00000506783 WASHC2AQ641Q2 1341 aa13.06□□□□□ -0.32
PHF3-208ENST00000506783 PLPPR3Q6T4P5 718 aa13.05□□□□□ -0.32
PHF3-208ENST00000506783 CC2D1BQ5T0F9 858 aaKnown RBP13.04□□□□□ -0.32
PHF3-208ENST00000506783 CFDP1Q9UEE9 299 aaPredicted RBP13.04□□□□□ -0.32
PHF3-208ENST00000506783 SKAP1Q86WV1 359 aa13.03□□□□□ -0.32
PHF3-208ENST00000506783 DCAF11Q8TEB1 546 aa13.02□□□□□ -0.33
PHF3-208ENST00000506783 LAS1LQ9Y4W2 734 aaKnown RBP13.02□□□□□ -0.33
PHF3-208ENST00000506783 CARD11Q9BXL7 1154 aa13.01□□□□□ -0.33
PHF3-208ENST00000506783 MSH5O43196 834 aa13.01□□□□□ -0.33
PHF3-208ENST00000506783 PKD2Q13563 968 aa13.01□□□□□ -0.33
PHF3-208ENST00000506783 NBPF8Q3BBV2 869 aa13.01□□□□□ -0.33
PHF3-208ENST00000506783 ARXQ96QS3 562 aa13□□□□□ -0.33
PHF3-208ENST00000506783 URB2Q14146 1524 aaKnown RBP13□□□□□ -0.33
PHF3-208ENST00000506783 RRBP1Q9P2E9 1410 aaKnown RBP13□□□□□ -0.33
PHF3-208ENST00000506783 LRRC9Q6ZRR7 1453 aa12.99□□□□□ -0.33
PHF3-208ENST00000506783 PLIN1O60240 522 aa12.99□□□□□ -0.33
PHF3-208ENST00000506783 CYB5RLQ6IPT4 315 aa12.99□□□□□ -0.33
PHF3-208ENST00000506783 FHAD1B1AJZ9 1412 aa12.98□□□□□ -0.33
PHF3-208ENST00000506783 CCER2I3L3R5 266 aa12.98□□□□□ -0.33
PHF3-208ENST00000506783 ZNF608Q9ULD9 1512 aaPredicted RBP12.98□□□□□ -0.33
PHF3-208ENST00000506783 TOP2BQ02880 1626 aa12.97□□□□□ -0.33
PHF3-208ENST00000506783 MRC2Q9UBG0 1479 aa12.97□□□□□ -0.33
PHF3-208ENST00000506783 PRKRIP1Q9H875 184 aaPredicted RBP12.97□□□□□ -0.33
PHF3-208ENST00000506783 RTL5Q5HYW3 569 aaPredicted RBP12.96□□□□□ -0.33
PHF3-208ENST00000506783 CHGAP10645 457 aaKnown RBP12.96□□□□□ -0.33
PHF3-208ENST00000506783 TNNT2P45379 298 aaPredicted RBP12.96□□□□□ -0.34
PHF3-208ENST00000506783 HNRNPMP52272 730 aaKnown RBP eCLIP12.94□□□□□ -0.344e-7■■■■□ 20.1
PHF3-208ENST00000506783 PPP4R2Q9NY27 417 aa12.94□□□□□ -0.34
PHF3-208ENST00000506783 CCDC18Q5T9S5 1454 aa12.94□□□□□ -0.34
PHF3-208ENST00000506783 NEUROD2Q15784 382 aa12.93□□□□□ -0.34
PHF3-208ENST00000506783 TSPY4P0CV99 314 aa12.92□□□□□ -0.34
PHF3-208ENST00000506783 TSPY10P0CW01 314 aa12.92□□□□□ -0.34
PHF3-208ENST00000506783 LAMC3Q9Y6N6 1575 aa12.92□□□□□ -0.34
PHF3-208ENST00000506783 ST20-MTHFSA0A0A6YYL1 179 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms