RNA–Protein interactions for RNA: ENST00000506767.1

TCOF1-210, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 869 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-210ENST00000506767 SHROOM2Q13796 1616 aa21.17■□□□□ 0.98
TCOF1-210ENST00000506767 CTTNBP2Q8WZ74 1663 aa21.15■□□□□ 0.98
TCOF1-210ENST00000506767 GOLGA3Q08378 1498 aa21.13■□□□□ 0.97
TCOF1-210ENST00000506767 IQGAP2Q13576 1575 aa21.12■□□□□ 0.97
TCOF1-210ENST00000506767 JPH4Q96JJ6 628 aa21.12■□□□□ 0.97
TCOF1-210ENST00000506767 ARHGEF11O15085 1522 aa21.09■□□□□ 0.97
TCOF1-210ENST00000506767 RIMBP3CA6NJZ7 1639 aa21.08■□□□□ 0.97
TCOF1-210ENST00000506767 RIMBP3BA6NNM3 1639 aa21.08■□□□□ 0.97
TCOF1-210ENST00000506767 RIMBP3Q9UFD9 1639 aa21.08■□□□□ 0.97
TCOF1-210ENST00000506767 PRG4Q92954 1404 aaPredicted RBP21.04■□□□□ 0.96
TCOF1-210ENST00000506767 UGGT2Q9NYU1 1516 aa21.04■□□□□ 0.96
TCOF1-210ENST00000506767 ERCC6L2Q5T890 1561 aa21.04■□□□□ 0.96
TCOF1-210ENST00000506767 CYB5RLQ6IPT4 315 aa21.03■□□□□ 0.96
TCOF1-210ENST00000506767 EHMT2Q96KQ7 1210 aa21.02■□□□□ 0.96
TCOF1-210ENST00000506767 UBTFP17480 764 aaKnown RBP21.01■□□□□ 0.95
TCOF1-210ENST00000506767 DISP1Q96F81 1524 aa20.98■□□□□ 0.95
TCOF1-210ENST00000506767 ARAP1Q96P48 1450 aa20.95■□□□□ 0.94
TCOF1-210ENST00000506767 CARMIL2Q6F5E8 1435 aa20.95■□□□□ 0.94
TCOF1-210ENST00000506767 KIAA0556O60303 1618 aa20.93■□□□□ 0.94
TCOF1-210ENST00000506767 TNIKQ9UKE5 1360 aa20.93■□□□□ 0.94
TCOF1-210ENST00000506767 SAMD9Q5K651 1589 aa20.91■□□□□ 0.94
TCOF1-210ENST00000506767 LOC105371045A0A1W2PR82 267 aa20.9■□□□□ 0.94
TCOF1-210ENST00000506767 EFCAB5A4FU69 1503 aa20.85■□□□□ 0.93
TCOF1-210ENST00000506767 RANGAP1P46060 587 aaPredicted RBP20.83■□□□□ 0.93
TCOF1-210ENST00000506767 PTPRGP23470 1445 aa20.83■□□□□ 0.93
TCOF1-210ENST00000506767 TRHP20396 242 aaPredicted RBP20.81■□□□□ 0.92
TCOF1-210ENST00000506767 ARHGAP35Q9NRY4 1499 aa20.8■□□□□ 0.92
TCOF1-210ENST00000506767 P3H3Q8IVL6 736 aa20.79■□□□□ 0.92
TCOF1-210ENST00000506767 FHOD3Q2V2M9 1422 aa20.76■□□□□ 0.91
TCOF1-210ENST00000506767 CLIP1P30622 1438 aa20.75■□□□□ 0.91
TCOF1-210ENST00000506767 CEP162Q5TB80 1403 aa20.73■□□□□ 0.91
TCOF1-210ENST00000506767 TTBK1Q5TCY1 1321 aaPredicted RBP20.73■□□□□ 0.91
TCOF1-210ENST00000506767 UACAQ9BZF9 1416 aa20.71■□□□□ 0.91
TCOF1-210ENST00000506767 ADCY10Q96PN6 1610 aa20.71■□□□□ 0.91
TCOF1-210ENST00000506767 UHRF1BP1LA0JNW5 1464 aa20.7■□□□□ 0.9
TCOF1-210ENST00000506767 ABCA8O94911 1581 aa20.69■□□□□ 0.9
TCOF1-210ENST00000506767 PLB1Q6P1J6 1458 aa20.69■□□□□ 0.9
TCOF1-210ENST00000506767 ABCC2Q92887 1545 aa20.68■□□□□ 0.9
TCOF1-210ENST00000506767 FMN1Q68DA7 1419 aa20.64■□□□□ 0.89
TCOF1-210ENST00000506767 RAPGEF6Q8TEU7 1601 aa20.63■□□□□ 0.89
TCOF1-210ENST00000506767 KDM5BQ9UGL1 1544 aa20.59■□□□□ 0.89
TCOF1-210ENST00000506767 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
TCOF1-210ENST00000506767 NPM1P06748 294 aaKnown RBP eCLIP20.55■□□□□ 0.88
TCOF1-210ENST00000506767 ZCCHC11Q5TAX3 1644 aaKnown RBP20.54■□□□□ 0.88
TCOF1-210ENST00000506767 CASKIN1Q8WXD9 1431 aa20.53■□□□□ 0.88
TCOF1-210ENST00000506767 ATP10BO94823 1461 aa20.52■□□□□ 0.88
TCOF1-210ENST00000506767 MAPKBP1O60336 1514 aa20.52■□□□□ 0.87
TCOF1-210ENST00000506767 PCF11O94913 1555 aaKnown RBP20.51■□□□□ 0.87
TCOF1-210ENST00000506767 HECW1Q76N89 1606 aa20.51■□□□□ 0.87
TCOF1-210ENST00000506767 FYCO1Q9BQS8 1478 aa20.49■□□□□ 0.87
TCOF1-210ENST00000506767 VPS8Q8N3P4 1428 aa20.47■□□□□ 0.87
TCOF1-210ENST00000506767 LRRIQ1Q96JM4 1722 aa20.46■□□□□ 0.87
TCOF1-210ENST00000506767 EPRSP07814 1512 aaKnown RBP20.46■□□□□ 0.87
TCOF1-210ENST00000506767 ASXL2Q76L83 1435 aa20.45■□□□□ 0.86
TCOF1-210ENST00000506767 ARID3CA6NKF2 412 aa20.44■□□□□ 0.86
TCOF1-210ENST00000506767 ATP1B4Q9UN42 357 aaPredicted RBP20.43■□□□□ 0.86
TCOF1-210ENST00000506767 CDK13Q14004 1512 aaKnown RBP20.43■□□□□ 0.86
TCOF1-210ENST00000506767 CCDC18Q5T9S5 1454 aa20.4■□□□□ 0.86
TCOF1-210ENST00000506767 WDR7Q9Y4E6 1490 aa20.39■□□□□ 0.85
TCOF1-210ENST00000506767 ABCC10Q5T3U5 1492 aa20.38■□□□□ 0.85
TCOF1-210ENST00000506767 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.38■□□□□ 0.85
TCOF1-210ENST00000506767 HNRNPUL2Q1KMD3 747 aaKnown RBP20.38■□□□□ 0.85
TCOF1-210ENST00000506767 DIP2BQ9P265 1576 aa20.36■□□□□ 0.85
TCOF1-210ENST00000506767 PLEKHD1A6NEE1 506 aa20.35■□□□□ 0.85
TCOF1-210ENST00000506767 KIF13AQ9H1H9 1805 aa20.34■□□□□ 0.85
TCOF1-210ENST00000506767 GLI2P10070 1586 aa20.33■□□□□ 0.84
TCOF1-210ENST00000506767 CDK11AQ9UQ88 783 aaPredicted RBP20.32■□□□□ 0.84
TCOF1-210ENST00000506767 MAP3K1Q13233 1512 aa20.29■□□□□ 0.84
TCOF1-210ENST00000506767 MAGI3Q5TCQ9 1506 aa20.29■□□□□ 0.84
TCOF1-210ENST00000506767 FAM69CQ0P6D2 419 aa20.29■□□□□ 0.84
TCOF1-210ENST00000506767 CFAP43Q8NDM7 1665 aa20.29■□□□□ 0.84
TCOF1-210ENST00000506767 KCNH8Q96L42 1107 aa20.28■□□□□ 0.84
TCOF1-210ENST00000506767 TIAM1Q13009 1591 aa20.28■□□□□ 0.84
TCOF1-210ENST00000506767 TROQ12816 1431 aaPredicted RBP20.27■□□□□ 0.84
TCOF1-210ENST00000506767 ABCA9Q8IUA7 1624 aa20.24■□□□□ 0.83
TCOF1-210ENST00000506767 MAP3K4Q9Y6R4 1608 aa20.24■□□□□ 0.83
TCOF1-210ENST00000506767 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.22■□□□□ 0.83
TCOF1-210ENST00000506767 KIF14Q15058 1648 aa20.2■□□□□ 0.82
TCOF1-210ENST00000506767 MTUS2Q5JR59 1369 aa20.2■□□□□ 0.82
TCOF1-210ENST00000506767 EHBP1L1Q8N3D4 1523 aa20.19■□□□□ 0.82
TCOF1-210ENST00000506767 LRRC9Q6ZRR7 1453 aa20.18■□□□□ 0.82
TCOF1-210ENST00000506767 TTC37Q6PGP7 1564 aa20.17■□□□□ 0.82
TCOF1-210ENST00000506767 APLP2Q06481 763 aa20.17■□□□□ 0.82
TCOF1-210ENST00000506767 KANK4Q5T7N3 995 aaPredicted RBP20.17■□□□□ 0.82
TCOF1-210ENST00000506767 CD109Q6YHK3 1445 aa20.17■□□□□ 0.82
TCOF1-210ENST00000506767 PPRC1Q5VV67 1664 aaKnown RBP20.16■□□□□ 0.82
TCOF1-210ENST00000506767 TSPOAP1O95153 1857 aa20.14■□□□□ 0.81
TCOF1-210ENST00000506767 AEBP2Q6ZN18 517 aaPredicted RBP20.14■□□□□ 0.81
TCOF1-210ENST00000506767 SUPT6HQ7KZ85 1726 aaKnown RBP20.1■□□□□ 0.81
TCOF1-210ENST00000506767 PLCH2O75038 1416 aa20.1■□□□□ 0.81
TCOF1-210ENST00000506767 MYO5CQ9NQX4 1742 aa20.09■□□□□ 0.81
TCOF1-210ENST00000506767 ARAP3Q8WWN8 1544 aa20.08■□□□□ 0.81
TCOF1-210ENST00000506767 NCOA2Q15596 1464 aa20.08■□□□□ 0.81
TCOF1-210ENST00000506767 TEX14Q8IWB6 1497 aa20.08■□□□□ 0.81
TCOF1-210ENST00000506767 CDC42BPAQ5VT25 1732 aa20.07■□□□□ 0.8
TCOF1-210ENST00000506767 GPATCH8Q9UKJ3 1502 aaKnown RBP20.06■□□□□ 0.8
TCOF1-210ENST00000506767 CDC42BPBQ9Y5S2 1711 aa20.05■□□□□ 0.8
TCOF1-210ENST00000506767 PREX2Q70Z35 1606 aa20.05■□□□□ 0.8
TCOF1-210ENST00000506767 CCNB3Q8WWL7 1395 aa20.03■□□□□ 0.8
TCOF1-210ENST00000506767 NEO1Q92859 1461 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms