RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 FAM69CQ0P6D2 419 aa17.61■□□□□ 0.41
NEDD9-210ENST00000505589 BIVM-ERCC5R4GMW8 1640 aa17.58■□□□□ 0.4
NEDD9-210ENST00000505589 ABCC10Q5T3U5 1492 aa17.53■□□□□ 0.4
NEDD9-210ENST00000505589 KIF13AQ9H1H9 1805 aa17.48■□□□□ 0.39
NEDD9-210ENST00000505589 MAPKBP1O60336 1514 aa17.47■□□□□ 0.39
NEDD9-210ENST00000505589 KIAA0586Q9BVV6 1533 aa17.44■□□□□ 0.38
NEDD9-210ENST00000505589 KIF27Q86VH2 1401 aa17.39■□□□□ 0.38
NEDD9-210ENST00000505589 IGF1RP08069 1367 aa17.39■□□□□ 0.37
NEDD9-210ENST00000505589 RUSC2Q8N2Y8 1516 aa17.38■□□□□ 0.37
NEDD9-210ENST00000505589 PTPRGP23470 1445 aa17.38■□□□□ 0.37
NEDD9-210ENST00000505589 CARMIL2Q6F5E8 1435 aa17.37■□□□□ 0.37
NEDD9-210ENST00000505589 DIP2BQ9P265 1576 aa17.36■□□□□ 0.37
NEDD9-210ENST00000505589 KDM4FA0A1W2PPD8 638 aa17.35■□□□□ 0.37
NEDD9-210ENST00000505589 KDM6BO15054 1643 aa17.34■□□□□ 0.37
NEDD9-210ENST00000505589 ADCY10Q96PN6 1610 aa17.32■□□□□ 0.36
NEDD9-210ENST00000505589 TNIKQ9UKE5 1360 aa17.31■□□□□ 0.36
NEDD9-210ENST00000505589 CARMIL1Q5VZK9 1371 aa17.3■□□□□ 0.36
NEDD9-210ENST00000505589 CUL7Q14999 1698 aa17.3■□□□□ 0.36
NEDD9-210ENST00000505589 PLB1Q6P1J6 1458 aa17.29■□□□□ 0.36
NEDD9-210ENST00000505589 TTBK1Q5TCY1 1321 aaPredicted RBP17.27■□□□□ 0.36
NEDD9-210ENST00000505589 ABCC2Q92887 1545 aa17.25■□□□□ 0.35
NEDD9-210ENST00000505589 TSPOAP1O95153 1857 aa17.24■□□□□ 0.35
NEDD9-210ENST00000505589 ASXL2Q76L83 1435 aa17.21■□□□□ 0.35
NEDD9-210ENST00000505589 UACAQ9BZF9 1416 aa17.21■□□□□ 0.34
NEDD9-210ENST00000505589 GLI2P10070 1586 aa17.2■□□□□ 0.34
NEDD9-210ENST00000505589 UHRF1BP1LA0JNW5 1464 aa17.2■□□□□ 0.34
NEDD9-210ENST00000505589 FAM9AQ8IZU1 332 aaPredicted RBP17.19■□□□□ 0.34
NEDD9-210ENST00000505589 TEX14Q8IWB6 1497 aa17.16■□□□□ 0.34
NEDD9-210ENST00000505589 IQGAP2Q13576 1575 aa17.15■□□□□ 0.34
NEDD9-210ENST00000505589 ILDR1Q86SU0 546 aaPredicted RBP17.14■□□□□ 0.33
NEDD9-210ENST00000505589 KDM5BQ9UGL1 1544 aa17.11■□□□□ 0.33
NEDD9-210ENST00000505589 EPRSP07814 1512 aaKnown RBP17.09■□□□□ 0.33
NEDD9-210ENST00000505589 ADGRL1O94910 1474 aa17.08■□□□□ 0.32
NEDD9-210ENST00000505589 RAPGEF2Q9Y4G8 1499 aa17.07■□□□□ 0.32
NEDD9-210ENST00000505589 DISP1Q96F81 1524 aa17.06■□□□□ 0.32
NEDD9-210ENST00000505589 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
NEDD9-210ENST00000505589 PPRC1Q5VV67 1664 aaKnown RBP17.02■□□□□ 0.32
NEDD9-210ENST00000505589 COL17A1Q9UMD9 1497 aaPredicted RBP17.02■□□□□ 0.32
NEDD9-210ENST00000505589 MAP3K4Q9Y6R4 1608 aa17.02■□□□□ 0.31
NEDD9-210ENST00000505589 WDR7Q9Y4E6 1490 aa17■□□□□ 0.31
NEDD9-210ENST00000505589 CD109Q6YHK3 1445 aa17■□□□□ 0.31
NEDD9-210ENST00000505589 KCNH8Q96L42 1107 aa17■□□□□ 0.31
NEDD9-210ENST00000505589 GOLGA3Q08378 1498 aa16.99■□□□□ 0.31
NEDD9-210ENST00000505589 ZCCHC11Q5TAX3 1644 aaKnown RBP16.97■□□□□ 0.31
NEDD9-210ENST00000505589 MAGI3Q5TCQ9 1506 aa16.96■□□□□ 0.31
NEDD9-210ENST00000505589 KIAA0556O60303 1618 aa16.96■□□□□ 0.3
NEDD9-210ENST00000505589 PHLDB1Q86UU1 1377 aa16.94■□□□□ 0.3
NEDD9-210ENST00000505589 CFAP43Q8NDM7 1665 aa16.9■□□□□ 0.3
NEDD9-210ENST00000505589 HECW2Q9P2P5 1572 aa16.89■□□□□ 0.3
NEDD9-210ENST00000505589 FBXO41Q8TF61 875 aa16.85■□□□□ 0.29
NEDD9-210ENST00000505589 ARAP3Q8WWN8 1544 aa16.84■□□□□ 0.29
NEDD9-210ENST00000505589 ABCA8O94911 1581 aa16.83■□□□□ 0.28
NEDD9-210ENST00000505589 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.81■□□□□ 0.28
NEDD9-210ENST00000505589 HNRNPUL2Q1KMD3 747 aaKnown RBP16.81■□□□□ 0.28
NEDD9-210ENST00000505589 CTTNBP2Q8WZ74 1663 aa16.81■□□□□ 0.28
NEDD9-210ENST00000505589 ARID4BQ4LE39 1312 aaPredicted RBP16.77■□□□□ 0.28
NEDD9-210ENST00000505589 PRXQ9BXM0 1461 aa16.77■□□□□ 0.28
NEDD9-210ENST00000505589 ATP10BO94823 1461 aa16.76■□□□□ 0.27
NEDD9-210ENST00000505589 P3H3Q8IVL6 736 aa16.76■□□□□ 0.27
NEDD9-210ENST00000505589 NEO1Q92859 1461 aa16.74■□□□□ 0.27
NEDD9-210ENST00000505589 RAPGEF3O95398 923 aa16.74■□□□□ 0.27
NEDD9-210ENST00000505589 PLEKHD1A6NEE1 506 aa16.73■□□□□ 0.27
NEDD9-210ENST00000505589 ARID3CA6NKF2 412 aa16.73■□□□□ 0.27
NEDD9-210ENST00000505589 CSRNP3Q8WYN3 585 aa16.71■□□□□ 0.27
NEDD9-210ENST00000505589 PTPRMP28827 1452 aa16.71■□□□□ 0.27
NEDD9-210ENST00000505589 KIF21BO75037 1637 aa16.7■□□□□ 0.26
NEDD9-210ENST00000505589 ABCA9Q8IUA7 1624 aa16.68■□□□□ 0.26
NEDD9-210ENST00000505589 POGZQ7Z3K3 1410 aa16.65■□□□□ 0.26
NEDD9-210ENST00000505589 ADAMTSL3P82987 1691 aa16.64■□□□□ 0.25
NEDD9-210ENST00000505589 DENND4BO75064 1496 aaPredicted RBP16.62■□□□□ 0.25
NEDD9-210ENST00000505589 RAPGEF6Q8TEU7 1601 aa16.6■□□□□ 0.25
NEDD9-210ENST00000505589 AKNAQ7Z591 1439 aa16.59■□□□□ 0.25
NEDD9-210ENST00000505589 BCORL1Q5H9F3 1711 aa16.58■□□□□ 0.24
NEDD9-210ENST00000505589 PCF11O94913 1555 aaKnown RBP16.57■□□□□ 0.24
NEDD9-210ENST00000505589 SAMD9Q5K651 1589 aa16.57■□□□□ 0.24
NEDD9-210ENST00000505589 EEA1Q15075 1411 aa16.57■□□□□ 0.24
NEDD9-210ENST00000505589 FHOD3Q2V2M9 1422 aa16.57■□□□□ 0.24
NEDD9-210ENST00000505589 MAGI2Q86UL8 1455 aa16.56■□□□□ 0.24
NEDD9-210ENST00000505589 FANCAO15360 1455 aa16.55■□□□□ 0.24
NEDD9-210ENST00000505589 RANGAP1P46060 587 aaPredicted RBP16.55■□□□□ 0.24
NEDD9-210ENST00000505589 CDK11AQ9UQ88 783 aaPredicted RBP16.55■□□□□ 0.24
NEDD9-210ENST00000505589 SENP3Q9H4L4 574 aaPredicted RBP16.54■□□□□ 0.24
NEDD9-210ENST00000505589 DMRT2Q9Y5R5 561 aa16.54■□□□□ 0.24
NEDD9-210ENST00000505589 CFAP74Q9C0B2 1584 aa16.54■□□□□ 0.24
NEDD9-210ENST00000505589 NUP153P49790 1475 aaKnown RBP16.54■□□□□ 0.24
NEDD9-210ENST00000505589 LMTK3Q96Q04 1460 aa16.54■□□□□ 0.24
NEDD9-210ENST00000505589 MADDQ8WXG6 1647 aa16.52■□□□□ 0.23
NEDD9-210ENST00000505589 PLPPR3Q6T4P5 718 aa16.51■□□□□ 0.23
NEDD9-210ENST00000505589 CERKQ8TCT0 537 aa16.51■□□□□ 0.23
NEDD9-210ENST00000505589 EFCAB2Q5VUJ9 269 aa16.5■□□□□ 0.23
NEDD9-210ENST00000505589 EFCAB5A4FU69 1503 aa16.5■□□□□ 0.23
NEDD9-210ENST00000505589 HSPA2P54652 639 aa16.49■□□□□ 0.23
NEDD9-210ENST00000505589 MLECQ14165 292 aa16.49■□□□□ 0.23
NEDD9-210ENST00000505589 ARHGEF40Q8TER5 1519 aa16.49■□□□□ 0.23
NEDD9-210ENST00000505589 FRMPD1Q5SYB0 1578 aa16.48■□□□□ 0.23
NEDD9-210ENST00000505589 PLCH2O75038 1416 aa16.46■□□□□ 0.23
NEDD9-210ENST00000505589 RIMS1Q86UR5 1692 aaKnown RBP16.46■□□□□ 0.23
NEDD9-210ENST00000505589 SCAPERQ9BY12 1400 aa16.45■□□□□ 0.22
NEDD9-210ENST00000505589 ZFYVE16Q7Z3T8 1539 aa16.45■□□□□ 0.22
NEDD9-210ENST00000505589 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms