RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-204ENST00000504807 SHROOM2Q13796 1616 aa23.3■■□□□ 1.32
DDX41-204ENST00000504807 NPM1P06748 294 aaKnown RBP eCLIP23.29■■□□□ 1.32
DDX41-204ENST00000504807 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.32
DDX41-204ENST00000504807 DIP2BQ9P265 1576 aa23.23■■□□□ 1.31
DDX41-204ENST00000504807 ERICH3Q5RHP9 1530 aa23.21■■□□□ 1.31
DDX41-204ENST00000504807 MAPKBP1O60336 1514 aa23.2■■□□□ 1.3
DDX41-204ENST00000504807 FHAD1B1AJZ9 1412 aa23.19■■□□□ 1.3
DDX41-204ENST00000504807 JPH4Q96JJ6 628 aa23.19■■□□□ 1.3
DDX41-204ENST00000504807 ADGRL1O94910 1474 aa23.13■■□□□ 1.29
DDX41-204ENST00000504807 TSPOAP1O95153 1857 aa23.11■■□□□ 1.29
DDX41-204ENST00000504807 HECW2Q9P2P5 1572 aa23.1■■□□□ 1.29
DDX41-204ENST00000504807 ADCY10Q96PN6 1610 aa23.08■■□□□ 1.28
DDX41-204ENST00000504807 IGF1RP08069 1367 aa23.01■■□□□ 1.27
DDX41-204ENST00000504807 RUSC2Q8N2Y8 1516 aa23.01■■□□□ 1.27
DDX41-204ENST00000504807 FBXO41Q8TF61 875 aa22.97■■□□□ 1.27
DDX41-204ENST00000504807 KIF27Q86VH2 1401 aa22.96■■□□□ 1.27
DDX41-204ENST00000504807 CUL7Q14999 1698 aa22.9■■□□□ 1.26
DDX41-204ENST00000504807 TTBK1Q5TCY1 1321 aaPredicted RBP22.87■■□□□ 1.25
DDX41-204ENST00000504807 COL17A1Q9UMD9 1497 aaPredicted RBP22.85■■□□□ 1.25
DDX41-204ENST00000504807 KIAA0586Q9BVV6 1533 aa22.82■■□□□ 1.24
DDX41-204ENST00000504807 PPRC1Q5VV67 1664 aaKnown RBP22.82■■□□□ 1.24
DDX41-204ENST00000504807 CARMIL1Q5VZK9 1371 aa22.81■■□□□ 1.24
DDX41-204ENST00000504807 ASXL2Q76L83 1435 aa22.81■■□□□ 1.24
DDX41-204ENST00000504807 PTPRGP23470 1445 aa22.79■■□□□ 1.24
DDX41-204ENST00000504807 PLB1Q6P1J6 1458 aa22.76■■□□□ 1.23
DDX41-204ENST00000504807 GLI2P10070 1586 aa22.76■■□□□ 1.23
DDX41-204ENST00000504807 ABCC2Q92887 1545 aa22.75■■□□□ 1.23
DDX41-204ENST00000504807 LMTK3Q96Q04 1460 aa22.67■■□□□ 1.22
DDX41-204ENST00000504807 TEX14Q8IWB6 1497 aa22.65■■□□□ 1.22
DDX41-204ENST00000504807 IQGAP2Q13576 1575 aa22.64■■□□□ 1.22
DDX41-204ENST00000504807 EPRSP07814 1512 aaKnown RBP22.64■■□□□ 1.21
DDX41-204ENST00000504807 TNIKQ9UKE5 1360 aa22.63■■□□□ 1.21
DDX41-204ENST00000504807 RAPGEF2Q9Y4G8 1499 aa22.62■■□□□ 1.21
DDX41-204ENST00000504807 DISP1Q96F81 1524 aa22.6■■□□□ 1.21
DDX41-204ENST00000504807 MAP3K4Q9Y6R4 1608 aa22.6■■□□□ 1.21
DDX41-204ENST00000504807 CARMIL2Q6F5E8 1435 aa22.58■■□□□ 1.21
DDX41-204ENST00000504807 UHRF1BP1LA0JNW5 1464 aa22.56■■□□□ 1.2
DDX41-204ENST00000504807 UACAQ9BZF9 1416 aa22.56■■□□□ 1.2
DDX41-204ENST00000504807 UGGT2Q9NYU1 1516 aa22.53■■□□□ 1.2
DDX41-204ENST00000504807 PRXQ9BXM0 1461 aa22.51■■□□□ 1.19
DDX41-204ENST00000504807 KDM5BQ9UGL1 1544 aa22.48■■□□□ 1.19
DDX41-204ENST00000504807 KIAA0556O60303 1618 aa22.48■■□□□ 1.19
DDX41-204ENST00000504807 ILDR2Q71H61 639 aa22.46■■□□□ 1.19
DDX41-204ENST00000504807 CTTNBP2Q8WZ74 1663 aa22.46■■□□□ 1.19
DDX41-204ENST00000504807 SOCS7O14512 581 aa22.44■■□□□ 1.18
DDX41-204ENST00000504807 KIF21BO75037 1637 aa22.44■■□□□ 1.18
DDX41-204ENST00000504807 ZCCHC11Q5TAX3 1644 aaKnown RBP22.42■■□□□ 1.18
DDX41-204ENST00000504807 PTPRMP28827 1452 aa22.41■■□□□ 1.18
DDX41-204ENST00000504807 WDR7Q9Y4E6 1490 aa22.4■■□□□ 1.18
DDX41-204ENST00000504807 CD109Q6YHK3 1445 aa22.4■■□□□ 1.18
DDX41-204ENST00000504807 DISP3Q9P2K9 1392 aa22.39■■□□□ 1.18
DDX41-204ENST00000504807 KCNH8Q96L42 1107 aa22.37■■□□□ 1.17
DDX41-204ENST00000504807 MAGI3Q5TCQ9 1506 aa22.36■■□□□ 1.17
DDX41-204ENST00000504807 PCF11O94913 1555 aaKnown RBP22.33■■□□□ 1.17
DDX41-204ENST00000504807 CERKQ8TCT0 537 aa22.29■■□□□ 1.16
DDX41-204ENST00000504807 CSRNP3Q8WYN3 585 aa22.28■■□□□ 1.16
DDX41-204ENST00000504807 ABCA8O94911 1581 aa22.28■■□□□ 1.16
DDX41-204ENST00000504807 ADAMTSL3P82987 1691 aa22.27■■□□□ 1.16
DDX41-204ENST00000504807 HSPA2P54652 639 aa22.26■■□□□ 1.15
DDX41-204ENST00000504807 GOLGA3Q08378 1498 aa22.25■■□□□ 1.15
DDX41-204ENST00000504807 CFAP43Q8NDM7 1665 aa22.25■■□□□ 1.15
DDX41-204ENST00000504807 ARID4BQ4LE39 1312 aaPredicted RBP22.23■■□□□ 1.15
DDX41-204ENST00000504807 ARAP3Q8WWN8 1544 aa22.21■■□□□ 1.15
DDX41-204ENST00000504807 P3H3Q8IVL6 736 aa22.2■■□□□ 1.14
DDX41-204ENST00000504807 FAM9AQ8IZU1 332 aaPredicted RBP22.2■■□□□ 1.14
DDX41-204ENST00000504807 SAMD9Q5K651 1589 aa22.2■■□□□ 1.14
DDX41-204ENST00000504807 PLPPR3Q6T4P5 718 aa22.19■■□□□ 1.14
DDX41-204ENST00000504807 MADDQ8WXG6 1647 aa22.18■■□□□ 1.14
DDX41-204ENST00000504807 RAPGEF3O95398 923 aa22.18■■□□□ 1.14
DDX41-204ENST00000504807 EEA1Q15075 1411 aa22.16■■□□□ 1.14
DDX41-204ENST00000504807 BCORL1Q5H9F3 1711 aa22.13■■□□□ 1.13
DDX41-204ENST00000504807 CHIC1Q5VXU3 224 aa22.12■■□□□ 1.13
DDX41-204ENST00000504807 ARID3CA6NKF2 412 aa22.11■■□□□ 1.13
DDX41-204ENST00000504807 ATP10BO94823 1461 aa22.09■■□□□ 1.13
DDX41-204ENST00000504807 RANGAP1P46060 587 aaPredicted RBP22.07■■□□□ 1.12
DDX41-204ENST00000504807 SPATA31D1Q6ZQQ2 1576 aa22.06■■□□□ 1.12
DDX41-204ENST00000504807 RIMS1Q86UR5 1692 aaKnown RBP22.06■■□□□ 1.12
DDX41-204ENST00000504807 FHOD3Q2V2M9 1422 aa22.06■■□□□ 1.12
DDX41-204ENST00000504807 PHLDB1Q86UU1 1377 aa22.04■■□□□ 1.12
DDX41-204ENST00000504807 RAPGEF6Q8TEU7 1601 aa22.03■■□□□ 1.12
DDX41-204ENST00000504807 EHMT2Q96KQ7 1210 aa22.01■■□□□ 1.11
DDX41-204ENST00000504807 NUP153P49790 1475 aaKnown RBP22■■□□□ 1.11
DDX41-204ENST00000504807 FRMPD1Q5SYB0 1578 aa21.97■■□□□ 1.11
DDX41-204ENST00000504807 NEO1Q92859 1461 aa21.95■■□□□ 1.1
DDX41-204ENST00000504807 ABCA9Q8IUA7 1624 aa21.92■■□□□ 1.1
DDX41-204ENST00000504807 EFCAB5A4FU69 1503 aa21.91■■□□□ 1.1
DDX41-204ENST00000504807 ARHGEF40Q8TER5 1519 aa21.91■■□□□ 1.1
DDX41-204ENST00000504807 MLECQ14165 292 aa21.91■■□□□ 1.1
DDX41-204ENST00000504807 POGZQ7Z3K3 1410 aa21.89■■□□□ 1.09
DDX41-204ENST00000504807 FANCAO15360 1455 aa21.85■■□□□ 1.09
DDX41-204ENST00000504807 ARHGAP35Q9NRY4 1499 aa21.85■■□□□ 1.09
DDX41-204ENST00000504807 YEATS2Q9ULM3 1422 aa21.85■■□□□ 1.09
DDX41-204ENST00000504807 DMRT2Q9Y5R5 561 aa21.84■■□□□ 1.09
DDX41-204ENST00000504807 DENND4BO75064 1496 aaPredicted RBP21.83■■□□□ 1.09
DDX41-204ENST00000504807 AKNAQ7Z591 1439 aa21.83■■□□□ 1.09
DDX41-204ENST00000504807 CDK13Q14004 1512 aaKnown RBP21.83■■□□□ 1.09
DDX41-204ENST00000504807 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.82■■□□□ 1.08
DDX41-204ENST00000504807 HNRNPUL2Q1KMD3 747 aaKnown RBP21.82■■□□□ 1.08
DDX41-204ENST00000504807 UBTFP17480 764 aaKnown RBP21.81■■□□□ 1.08
DDX41-204ENST00000504807 CEBPAP49715 358 aaPredicted RBP21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms