RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 IQGAP2Q13576 1575 aa22.26■■□□□ 1.15
CPNE1-227ENST00000498056 SHROOM2Q13796 1616 aa22.18■■□□□ 1.14
CPNE1-227ENST00000498056 KIAA0586Q9BVV6 1533 aa22.17■■□□□ 1.14
CPNE1-227ENST00000498056 OSCARQ8IYS5 282 aa22.15■■□□□ 1.14
CPNE1-227ENST00000498056 UBTFP17480 764 aaKnown RBP22.12■■□□□ 1.13
CPNE1-227ENST00000498056 UGGT2Q9NYU1 1516 aa22.06■■□□□ 1.12
CPNE1-227ENST00000498056 KIAA0556O60303 1618 aa22.06■■□□□ 1.12
CPNE1-227ENST00000498056 SAMD9Q5K651 1589 aa22.04■■□□□ 1.12
CPNE1-227ENST00000498056 ERCC6L2Q5T890 1561 aa22.03■■□□□ 1.12
CPNE1-227ENST00000498056 TNIKQ9UKE5 1360 aa22.02■■□□□ 1.12
CPNE1-227ENST00000498056 LOC105371045A0A1W2PR82 267 aa22.02■■□□□ 1.12
CPNE1-227ENST00000498056 EFCAB5A4FU69 1503 aa22.01■■□□□ 1.11
CPNE1-227ENST00000498056 RIMBP3CA6NJZ7 1639 aa22.01■■□□□ 1.11
CPNE1-227ENST00000498056 RIMBP3BA6NNM3 1639 aa22.01■■□□□ 1.11
CPNE1-227ENST00000498056 RIMBP3Q9UFD9 1639 aa22.01■■□□□ 1.11
CPNE1-227ENST00000498056 RANGAP1P46060 587 aaPredicted RBP21.99■■□□□ 1.11
CPNE1-227ENST00000498056 ARHGEF11O15085 1522 aa21.99■■□□□ 1.11
CPNE1-227ENST00000498056 PRG4Q92954 1404 aaPredicted RBP21.98■■□□□ 1.11
CPNE1-227ENST00000498056 DISP1Q96F81 1524 aa21.97■■□□□ 1.11
CPNE1-227ENST00000498056 CEP162Q5TB80 1403 aa21.95■■□□□ 1.1
CPNE1-227ENST00000498056 JPH4Q96JJ6 628 aa21.94■■□□□ 1.1
CPNE1-227ENST00000498056 CARMIL2Q6F5E8 1435 aa21.94■■□□□ 1.1
CPNE1-227ENST00000498056 CLIP1P30622 1438 aa21.9■■□□□ 1.1
CPNE1-227ENST00000498056 ARHGAP35Q9NRY4 1499 aa21.9■■□□□ 1.1
CPNE1-227ENST00000498056 FHOD3Q2V2M9 1422 aa21.87■■□□□ 1.09
CPNE1-227ENST00000498056 ARAP1Q96P48 1450 aa21.83■■□□□ 1.08
CPNE1-227ENST00000498056 P3H3Q8IVL6 736 aa21.81■■□□□ 1.08
CPNE1-227ENST00000498056 TTBK1Q5TCY1 1321 aaPredicted RBP21.79■■□□□ 1.08
CPNE1-227ENST00000498056 PCF11O94913 1555 aaKnown RBP21.78■■□□□ 1.08
CPNE1-227ENST00000498056 RAPGEF6Q8TEU7 1601 aa21.77■■□□□ 1.07
CPNE1-227ENST00000498056 DNAJC5Q9H3Z4 198 aa21.74■■□□□ 1.07
CPNE1-227ENST00000498056 PTPRGP23470 1445 aa21.73■■□□□ 1.07
CPNE1-227ENST00000498056 ADCY10Q96PN6 1610 aa21.73■■□□□ 1.07
CPNE1-227ENST00000498056 HECW1Q76N89 1606 aa21.72■■□□□ 1.07
CPNE1-227ENST00000498056 ABCA8O94911 1581 aa21.71■■□□□ 1.07
CPNE1-227ENST00000498056 FMN1Q68DA7 1419 aa21.71■■□□□ 1.07
CPNE1-227ENST00000498056 LRRIQ1Q96JM4 1722 aa21.7■■□□□ 1.06
CPNE1-227ENST00000498056 PLB1Q6P1J6 1458 aa21.69■■□□□ 1.06
CPNE1-227ENST00000498056 ABCC2Q92887 1545 aa21.68■■□□□ 1.06
CPNE1-227ENST00000498056 FYCO1Q9BQS8 1478 aa21.64■■□□□ 1.05
CPNE1-227ENST00000498056 VPS8Q8N3P4 1428 aa21.63■■□□□ 1.05
CPNE1-227ENST00000498056 UACAQ9BZF9 1416 aa21.63■■□□□ 1.05
CPNE1-227ENST00000498056 ZCCHC11Q5TAX3 1644 aaKnown RBP21.63■■□□□ 1.05
CPNE1-227ENST00000498056 CFAP43Q8NDM7 1665 aa21.6■■□□□ 1.05
CPNE1-227ENST00000498056 UHRF1BP1LA0JNW5 1464 aa21.59■■□□□ 1.05
CPNE1-227ENST00000498056 CYB5RLQ6IPT4 315 aa21.59■■□□□ 1.05
CPNE1-227ENST00000498056 NUP153P49790 1475 aaKnown RBP21.58■■□□□ 1.05
CPNE1-227ENST00000498056 CASKIN1Q8WXD9 1431 aa21.57■■□□□ 1.04
CPNE1-227ENST00000498056 CDK13Q14004 1512 aaKnown RBP21.55■■□□□ 1.04
CPNE1-227ENST00000498056 CCDC18Q5T9S5 1454 aa21.52■■□□□ 1.03
CPNE1-227ENST00000498056 EPRSP07814 1512 aaKnown RBP21.51■■□□□ 1.03
CPNE1-227ENST00000498056 ATP1B4Q9UN42 357 aaPredicted RBP21.51■■□□□ 1.03
CPNE1-227ENST00000498056 KDM5BQ9UGL1 1544 aa21.5■■□□□ 1.03
CPNE1-227ENST00000498056 ARID3CA6NKF2 412 aa21.49■■□□□ 1.03
CPNE1-227ENST00000498056 TIAM1Q13009 1591 aa21.48■■□□□ 1.03
CPNE1-227ENST00000498056 ATP10BO94823 1461 aa21.44■■□□□ 1.02
CPNE1-227ENST00000498056 MAPKBP1O60336 1514 aa21.43■■□□□ 1.02
CPNE1-227ENST00000498056 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.4■■□□□ 1.02
CPNE1-227ENST00000498056 HNRNPUL2Q1KMD3 747 aaKnown RBP21.4■■□□□ 1.02
CPNE1-227ENST00000498056 NPM1P06748 294 aaKnown RBP eCLIP21.38■■□□□ 1.01
CPNE1-227ENST00000498056 EHBP1L1Q8N3D4 1523 aa21.38■■□□□ 1.01
CPNE1-227ENST00000498056 MAGI3Q5TCQ9 1506 aa21.37■■□□□ 1.01
CPNE1-227ENST00000498056 KIF14Q15058 1648 aa21.37■■□□□ 1.01
CPNE1-227ENST00000498056 MAP3K1Q13233 1512 aa21.36■■□□□ 1.01
CPNE1-227ENST00000498056 WDR7Q9Y4E6 1490 aa21.36■■□□□ 1.01
CPNE1-227ENST00000498056 ASXL2Q76L83 1435 aa21.36■■□□□ 1.01
CPNE1-227ENST00000498056 KIF13AQ9H1H9 1805 aa21.36■■□□□ 1.01
CPNE1-227ENST00000498056 SUPT6HQ7KZ85 1726 aaKnown RBP21.33■■□□□ 1.01
CPNE1-227ENST00000498056 DIP2BQ9P265 1576 aa21.33■■□□□ 1.01
CPNE1-227ENST00000498056 APLP2Q06481 763 aa21.31■■□□□ 1
CPNE1-227ENST00000498056 MTUS2Q5JR59 1369 aa21.29■■□□□ 1
CPNE1-227ENST00000498056 TROQ12816 1431 aaPredicted RBP21.29■■□□□ 1
CPNE1-227ENST00000498056 TTC37Q6PGP7 1564 aa21.28■■□□□ 1
CPNE1-227ENST00000498056 LRRC9Q6ZRR7 1453 aa21.28■■□□□ 1
CPNE1-227ENST00000498056 MYO5CQ9NQX4 1742 aa21.28■■□□□ 1
CPNE1-227ENST00000498056 TSPOAP1O95153 1857 aa21.26■□□□□ 0.99
CPNE1-227ENST00000498056 ABCA9Q8IUA7 1624 aa21.26■□□□□ 0.99
CPNE1-227ENST00000498056 CDK11AQ9UQ88 783 aaPredicted RBP21.25■□□□□ 0.99
CPNE1-227ENST00000498056 ITSN2Q9NZM3 1697 aa21.24■□□□□ 0.99
CPNE1-227ENST00000498056 CDC42BPAQ5VT25 1732 aa21.24■□□□□ 0.99
CPNE1-227ENST00000498056 PLEKHD1A6NEE1 506 aa21.23■□□□□ 0.99
CPNE1-227ENST00000498056 MAP3K4Q9Y6R4 1608 aa21.22■□□□□ 0.99
CPNE1-227ENST00000498056 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.22■□□□□ 0.99
CPNE1-227ENST00000498056 ABCC10Q5T3U5 1492 aa21.21■□□□□ 0.99
CPNE1-227ENST00000498056 GLI2P10070 1586 aa21.21■□□□□ 0.99
CPNE1-227ENST00000498056 PREX2Q70Z35 1606 aa21.2■□□□□ 0.98
CPNE1-227ENST00000498056 CDC42BPBQ9Y5S2 1711 aa21.16■□□□□ 0.98
CPNE1-227ENST00000498056 NCOA2Q15596 1464 aa21.16■□□□□ 0.98
CPNE1-227ENST00000498056 KANK4Q5T7N3 995 aaPredicted RBP21.16■□□□□ 0.98
CPNE1-227ENST00000498056 KCNH8Q96L42 1107 aa21.16■□□□□ 0.98
CPNE1-227ENST00000498056 PPRC1Q5VV67 1664 aaKnown RBP21.15■□□□□ 0.98
CPNE1-227ENST00000498056 PPARGC1BQ86YN6 1023 aaKnown RBP21.12■□□□□ 0.97
CPNE1-227ENST00000498056 CFAP74Q9C0B2 1584 aa21.11■□□□□ 0.97
CPNE1-227ENST00000498056 ARHGAP5Q13017 1502 aa21.09■□□□□ 0.97
CPNE1-227ENST00000498056 FAM69CQ0P6D2 419 aa21.08■□□□□ 0.97
CPNE1-227ENST00000498056 TRHP20396 242 aaPredicted RBP21.06■□□□□ 0.96
CPNE1-227ENST00000498056 CCNB3Q8WWL7 1395 aa21.06■□□□□ 0.96
CPNE1-227ENST00000498056 CD109Q6YHK3 1445 aa21.04■□□□□ 0.96
CPNE1-227ENST00000498056 ARAP3Q8WWN8 1544 aa21.04■□□□□ 0.96
CPNE1-227ENST00000498056 MYOM3Q5VTT5 1437 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms