RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 KIF21BO75037 1637 aa19.55■□□□□ 0.72
CUX1-210ENST00000497815 CLASP1Q7Z460 1538 aa19.53■□□□□ 0.72
CUX1-210ENST00000497815 GOLGA3Q08378 1498 aa19.48■□□□□ 0.71
CUX1-210ENST00000497815 KIAA0586Q9BVV6 1533 aa19.47■□□□□ 0.71
CUX1-210ENST00000497815 UBTFP17480 764 aaKnown RBP19.46■□□□□ 0.71
CUX1-210ENST00000497815 DNAJC5Q9H3Z4 198 aa19.45■□□□□ 0.7
CUX1-210ENST00000497815 CTTNBP2Q8WZ74 1663 aa19.43■□□□□ 0.7
CUX1-210ENST00000497815 IQGAP2Q13576 1575 aa19.43■□□□□ 0.7
CUX1-210ENST00000497815 JPH4Q96JJ6 628 aa19.41■□□□□ 0.7
CUX1-210ENST00000497815 RANGAP1P46060 587 aaPredicted RBP19.39■□□□□ 0.69
CUX1-210ENST00000497815 SHROOM2Q13796 1616 aa19.38■□□□□ 0.69
CUX1-210ENST00000497815 PRG4Q92954 1404 aaPredicted RBP19.37■□□□□ 0.69
CUX1-210ENST00000497815 LOC105371045A0A1W2PR82 267 aa19.37■□□□□ 0.69
CUX1-210ENST00000497815 ARHGEF11O15085 1522 aa19.35■□□□□ 0.69
CUX1-210ENST00000497815 ERCC6L2Q5T890 1561 aa19.34■□□□□ 0.69
CUX1-210ENST00000497815 RIMBP3CA6NJZ7 1639 aa19.32■□□□□ 0.68
CUX1-210ENST00000497815 RIMBP3BA6NNM3 1639 aa19.32■□□□□ 0.68
CUX1-210ENST00000497815 RIMBP3Q9UFD9 1639 aa19.32■□□□□ 0.68
CUX1-210ENST00000497815 UGGT2Q9NYU1 1516 aa19.31■□□□□ 0.68
CUX1-210ENST00000497815 TNIKQ9UKE5 1360 aa19.28■□□□□ 0.68
CUX1-210ENST00000497815 CARMIL2Q6F5E8 1435 aa19.27■□□□□ 0.68
CUX1-210ENST00000497815 DISP1Q96F81 1524 aa19.27■□□□□ 0.68
CUX1-210ENST00000497815 TTBK1Q5TCY1 1321 aaPredicted RBP19.26■□□□□ 0.67
CUX1-210ENST00000497815 P3H3Q8IVL6 736 aa19.26■□□□□ 0.67
CUX1-210ENST00000497815 KIAA0556O60303 1618 aa19.24■□□□□ 0.67
CUX1-210ENST00000497815 ARAP1Q96P48 1450 aa19.22■□□□□ 0.67
CUX1-210ENST00000497815 SAMD9Q5K651 1589 aa19.2■□□□□ 0.66
CUX1-210ENST00000497815 CYB5RLQ6IPT4 315 aa19.2■□□□□ 0.66
CUX1-210ENST00000497815 EFCAB5A4FU69 1503 aa19.17■□□□□ 0.66
CUX1-210ENST00000497815 PTPRGP23470 1445 aa19.17■□□□□ 0.66
CUX1-210ENST00000497815 CLIP1P30622 1438 aa19.17■□□□□ 0.66
CUX1-210ENST00000497815 FHOD3Q2V2M9 1422 aa19.16■□□□□ 0.66
CUX1-210ENST00000497815 ARHGAP35Q9NRY4 1499 aa19.16■□□□□ 0.66
CUX1-210ENST00000497815 CEP162Q5TB80 1403 aa19.15■□□□□ 0.66
CUX1-210ENST00000497815 PLB1Q6P1J6 1458 aa19.05■□□□□ 0.64
CUX1-210ENST00000497815 UACAQ9BZF9 1416 aa19.03■□□□□ 0.64
CUX1-210ENST00000497815 ADCY10Q96PN6 1610 aa19.01■□□□□ 0.63
CUX1-210ENST00000497815 ABCA8O94911 1581 aa19■□□□□ 0.63
CUX1-210ENST00000497815 FMN1Q68DA7 1419 aa19■□□□□ 0.63
CUX1-210ENST00000497815 ABCC2Q92887 1545 aa18.99■□□□□ 0.63
CUX1-210ENST00000497815 ARID3CA6NKF2 412 aa18.98■□□□□ 0.63
CUX1-210ENST00000497815 ATP1B4Q9UN42 357 aaPredicted RBP18.98■□□□□ 0.63
CUX1-210ENST00000497815 RAPGEF6Q8TEU7 1601 aa18.97■□□□□ 0.63
CUX1-210ENST00000497815 UHRF1BP1LA0JNW5 1464 aa18.97■□□□□ 0.63
CUX1-210ENST00000497815 NPM1P06748 294 aaKnown RBP eCLIP18.95■□□□□ 0.62
CUX1-210ENST00000497815 PCF11O94913 1555 aaKnown RBP18.93■□□□□ 0.62
CUX1-210ENST00000497815 NUP153P49790 1475 aaKnown RBP18.91■□□□□ 0.62
CUX1-210ENST00000497815 HECW1Q76N89 1606 aa18.89■□□□□ 0.62
CUX1-210ENST00000497815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.89■□□□□ 0.61
CUX1-210ENST00000497815 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
CUX1-210ENST00000497815 CASKIN1Q8WXD9 1431 aa18.89■□□□□ 0.61
CUX1-210ENST00000497815 VPS8Q8N3P4 1428 aa18.88■□□□□ 0.61
CUX1-210ENST00000497815 KDM5BQ9UGL1 1544 aa18.88■□□□□ 0.61
CUX1-210ENST00000497815 ZCCHC11Q5TAX3 1644 aaKnown RBP18.88■□□□□ 0.61
CUX1-210ENST00000497815 ATP10BO94823 1461 aa18.86■□□□□ 0.61
CUX1-210ENST00000497815 FYCO1Q9BQS8 1478 aa18.86■□□□□ 0.61
CUX1-210ENST00000497815 CDK13Q14004 1512 aaKnown RBP18.84■□□□□ 0.61
CUX1-210ENST00000497815 EPRSP07814 1512 aaKnown RBP18.83■□□□□ 0.6
CUX1-210ENST00000497815 ASXL2Q76L83 1435 aa18.81■□□□□ 0.6
CUX1-210ENST00000497815 LRRIQ1Q96JM4 1722 aa18.8■□□□□ 0.6
CUX1-210ENST00000497815 MAPKBP1O60336 1514 aa18.79■□□□□ 0.6
CUX1-210ENST00000497815 CCDC18Q5T9S5 1454 aa18.77■□□□□ 0.6
CUX1-210ENST00000497815 WDR7Q9Y4E6 1490 aa18.75■□□□□ 0.59
CUX1-210ENST00000497815 PLEKHD1A6NEE1 506 aa18.74■□□□□ 0.59
CUX1-210ENST00000497815 TRHP20396 242 aaPredicted RBP18.74■□□□□ 0.59
CUX1-210ENST00000497815 KCNH8Q96L42 1107 aa18.74■□□□□ 0.59
CUX1-210ENST00000497815 CDK11AQ9UQ88 783 aaPredicted RBP18.72■□□□□ 0.59
CUX1-210ENST00000497815 APLP2Q06481 763 aa18.71■□□□□ 0.59
CUX1-210ENST00000497815 FAM69CQ0P6D2 419 aa18.69■□□□□ 0.58
CUX1-210ENST00000497815 ABCC10Q5T3U5 1492 aa18.69■□□□□ 0.58
CUX1-210ENST00000497815 TIAM1Q13009 1591 aa18.68■□□□□ 0.58
CUX1-210ENST00000497815 CFAP43Q8NDM7 1665 aa18.68■□□□□ 0.58
CUX1-210ENST00000497815 MAGI3Q5TCQ9 1506 aa18.68■□□□□ 0.58
CUX1-210ENST00000497815 DIP2BQ9P265 1576 aa18.68■□□□□ 0.58
CUX1-210ENST00000497815 FOXD1Q16676 465 aa18.66■□□□□ 0.58
CUX1-210ENST00000497815 MTUS2Q5JR59 1369 aa18.66■□□□□ 0.58
CUX1-210ENST00000497815 TROQ12816 1431 aaPredicted RBP18.66■□□□□ 0.58
CUX1-210ENST00000497815 KANK4Q5T7N3 995 aaPredicted RBP18.62■□□□□ 0.57
CUX1-210ENST00000497815 MAP3K1Q13233 1512 aa18.62■□□□□ 0.57
CUX1-210ENST00000497815 KIF14Q15058 1648 aa18.62■□□□□ 0.57
CUX1-210ENST00000497815 KIF13AQ9H1H9 1805 aa18.62■□□□□ 0.57
CUX1-210ENST00000497815 GLI2P10070 1586 aa18.6■□□□□ 0.57
CUX1-210ENST00000497815 EHBP1L1Q8N3D4 1523 aa18.6■□□□□ 0.57
CUX1-210ENST00000497815 LRRC9Q6ZRR7 1453 aa18.6■□□□□ 0.57
CUX1-210ENST00000497815 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.58■□□□□ 0.567e-8■■■■■ 32
CUX1-210ENST00000497815 PPARGC1BQ86YN6 1023 aaKnown RBP18.57■□□□□ 0.56
CUX1-210ENST00000497815 ABCA9Q8IUA7 1624 aa18.56■□□□□ 0.56
CUX1-210ENST00000497815 TTC37Q6PGP7 1564 aa18.56■□□□□ 0.56
CUX1-210ENST00000497815 CD109Q6YHK3 1445 aa18.56■□□□□ 0.56
CUX1-210ENST00000497815 MAP3K4Q9Y6R4 1608 aa18.55■□□□□ 0.56
CUX1-210ENST00000497815 TSPOAP1O95153 1857 aa18.52■□□□□ 0.56
CUX1-210ENST00000497815 SUPT6HQ7KZ85 1726 aaKnown RBP18.52■□□□□ 0.55
CUX1-210ENST00000497815 NCOA2Q15596 1464 aa18.51■□□□□ 0.55
CUX1-210ENST00000497815 CCNB3Q8WWL7 1395 aa18.49■□□□□ 0.55
CUX1-210ENST00000497815 MYO5CQ9NQX4 1742 aa18.47■□□□□ 0.55
CUX1-210ENST00000497815 PPRC1Q5VV67 1664 aaKnown RBP18.47■□□□□ 0.55
CUX1-210ENST00000497815 PLCH2O75038 1416 aa18.46■□□□□ 0.55
CUX1-210ENST00000497815 ARHGAP5Q13017 1502 aa18.45■□□□□ 0.54
CUX1-210ENST00000497815 TEX14Q8IWB6 1497 aa18.45■□□□□ 0.54
CUX1-210ENST00000497815 GPATCH8Q9UKJ3 1502 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms