RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 UBTFP17480 764 aaKnown RBP25.73■■□□□ 1.71
HPS4-216ENST00000493455 CLASP1Q7Z460 1538 aa25.69■■□□□ 1.7
HPS4-216ENST00000493455 LOC105371045A0A1W2PR82 267 aa25.65■■□□□ 1.7
HPS4-216ENST00000493455 IQGAP2Q13576 1575 aa25.65■■□□□ 1.7
HPS4-216ENST00000493455 KIAA0586Q9BVV6 1533 aa25.64■■□□□ 1.7
HPS4-216ENST00000493455 RANGAP1P46060 587 aaPredicted RBP25.64■■□□□ 1.7
HPS4-216ENST00000493455 SHROOM2Q13796 1616 aa25.54■■□□□ 1.68
HPS4-216ENST00000493455 JPH4Q96JJ6 628 aa25.53■■□□□ 1.68
HPS4-216ENST00000493455 PRG4Q92954 1404 aaPredicted RBP25.49■■□□□ 1.67
HPS4-216ENST00000493455 ERCC6L2Q5T890 1561 aa25.48■■□□□ 1.67
HPS4-216ENST00000493455 TNIKQ9UKE5 1360 aa25.47■■□□□ 1.67
HPS4-216ENST00000493455 UGGT2Q9NYU1 1516 aa25.45■■□□□ 1.66
HPS4-216ENST00000493455 ARHGEF11O15085 1522 aa25.43■■□□□ 1.66
HPS4-216ENST00000493455 TTBK1Q5TCY1 1321 aaPredicted RBP25.43■■□□□ 1.66
HPS4-216ENST00000493455 RIMBP3CA6NJZ7 1639 aa25.43■■□□□ 1.66
HPS4-216ENST00000493455 RIMBP3BA6NNM3 1639 aa25.43■■□□□ 1.66
HPS4-216ENST00000493455 RIMBP3Q9UFD9 1639 aa25.43■■□□□ 1.66
HPS4-216ENST00000493455 P3H3Q8IVL6 736 aa25.42■■□□□ 1.66
HPS4-216ENST00000493455 KIAA0556O60303 1618 aa25.41■■□□□ 1.66
HPS4-216ENST00000493455 CARMIL2Q6F5E8 1435 aa25.39■■□□□ 1.66
HPS4-216ENST00000493455 DNAJC5Q9H3Z4 198 aa25.39■■□□□ 1.66
HPS4-216ENST00000493455 DISP1Q96F81 1524 aa25.38■■□□□ 1.65
HPS4-216ENST00000493455 SAMD9Q5K651 1589 aa25.35■■□□□ 1.65
HPS4-216ENST00000493455 CEP162Q5TB80 1403 aa25.34■■□□□ 1.65
HPS4-216ENST00000493455 CLIP1P30622 1438 aa25.33■■□□□ 1.65
HPS4-216ENST00000493455 EFCAB5A4FU69 1503 aa25.32■■□□□ 1.64
HPS4-216ENST00000493455 FHOD3Q2V2M9 1422 aa25.3■■□□□ 1.64
HPS4-216ENST00000493455 ARHGAP35Q9NRY4 1499 aa25.29■■□□□ 1.64
HPS4-216ENST00000493455 ARAP1Q96P48 1450 aa25.26■■□□□ 1.63
HPS4-216ENST00000493455 PTPRGP23470 1445 aa25.22■■□□□ 1.63
HPS4-216ENST00000493455 CYB5RLQ6IPT4 315 aa25.21■■□□□ 1.63
HPS4-216ENST00000493455 PLB1Q6P1J6 1458 aa25.1■■□□□ 1.61
HPS4-216ENST00000493455 ATP1B4Q9UN42 357 aaPredicted RBP25.09■■□□□ 1.61
HPS4-216ENST00000493455 FMN1Q68DA7 1419 aa25.08■■□□□ 1.61
HPS4-216ENST00000493455 RAPGEF6Q8TEU7 1601 aa25.08■■□□□ 1.6
HPS4-216ENST00000493455 UACAQ9BZF9 1416 aa25.06■■□□□ 1.6
HPS4-216ENST00000493455 ADCY10Q96PN6 1610 aa25.05■■□□□ 1.6
HPS4-216ENST00000493455 ARID3CA6NKF2 412 aa25.05■■□□□ 1.6
HPS4-216ENST00000493455 ABCA8O94911 1581 aa25.05■■□□□ 1.6
HPS4-216ENST00000493455 PCF11O94913 1555 aaKnown RBP25.04■■□□□ 1.6
HPS4-216ENST00000493455 ABCC2Q92887 1545 aa25.02■■□□□ 1.6
HPS4-216ENST00000493455 HECW1Q76N89 1606 aa24.98■■□□□ 1.59
HPS4-216ENST00000493455 VPS8Q8N3P4 1428 aa24.96■■□□□ 1.59
HPS4-216ENST00000493455 UHRF1BP1LA0JNW5 1464 aa24.95■■□□□ 1.58
HPS4-216ENST00000493455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.94■■□□□ 1.58
HPS4-216ENST00000493455 HNRNPUL2Q1KMD3 747 aaKnown RBP24.94■■□□□ 1.58
HPS4-216ENST00000493455 NPM1P06748 294 aaKnown RBP eCLIP24.93■■□□□ 1.58
HPS4-216ENST00000493455 NUP153P49790 1475 aaKnown RBP24.93■■□□□ 1.58
HPS4-216ENST00000493455 CASKIN1Q8WXD9 1431 aa24.93■■□□□ 1.58
HPS4-216ENST00000493455 LRRIQ1Q96JM4 1722 aa24.92■■□□□ 1.58
HPS4-216ENST00000493455 ZCCHC11Q5TAX3 1644 aaKnown RBP24.92■■□□□ 1.58
HPS4-216ENST00000493455 FYCO1Q9BQS8 1478 aa24.91■■□□□ 1.58
HPS4-216ENST00000493455 CDK13Q14004 1512 aaKnown RBP24.89■■□□□ 1.57
HPS4-216ENST00000493455 EPRSP07814 1512 aaKnown RBP24.85■■□□□ 1.57
HPS4-216ENST00000493455 KDM5BQ9UGL1 1544 aa24.85■■□□□ 1.57
HPS4-216ENST00000493455 ATP10BO94823 1461 aa24.83■■□□□ 1.57
HPS4-216ENST00000493455 CCDC18Q5T9S5 1454 aa24.8■■□□□ 1.56
HPS4-216ENST00000493455 APLP2Q06481 763 aa24.77■■□□□ 1.56
HPS4-216ENST00000493455 CFAP43Q8NDM7 1665 aa24.76■■□□□ 1.55
HPS4-216ENST00000493455 ASXL2Q76L83 1435 aa24.74■■□□□ 1.55
HPS4-216ENST00000493455 TIAM1Q13009 1591 aa24.72■■□□□ 1.55
HPS4-216ENST00000493455 MAPKBP1O60336 1514 aa24.72■■□□□ 1.55
HPS4-216ENST00000493455 PLEKHD1A6NEE1 506 aa24.7■■□□□ 1.54
HPS4-216ENST00000493455 KCNH8Q96L42 1107 aa24.69■■□□□ 1.54
HPS4-216ENST00000493455 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
HPS4-216ENST00000493455 WDR7Q9Y4E6 1490 aa24.69■■□□□ 1.54
HPS4-216ENST00000493455 MAGI3Q5TCQ9 1506 aa24.66■■□□□ 1.54
HPS4-216ENST00000493455 MTUS2Q5JR59 1369 aa24.65■■□□□ 1.54
HPS4-216ENST00000493455 PPARGC1BQ86YN6 1023 aaKnown RBP24.62■■□□□ 1.53
HPS4-216ENST00000493455 TRHP20396 242 aaPredicted RBP24.61■■□□□ 1.53
HPS4-216ENST00000493455 EHBP1L1Q8N3D4 1523 aa24.61■■□□□ 1.53
HPS4-216ENST00000493455 TROQ12816 1431 aaPredicted RBP24.61■■□□□ 1.53
HPS4-216ENST00000493455 KIF14Q15058 1648 aa24.6■■□□□ 1.53
HPS4-216ENST00000493455 MAP3K1Q13233 1512 aa24.6■■□□□ 1.53
HPS4-216ENST00000493455 KANK4Q5T7N3 995 aaPredicted RBP24.59■■□□□ 1.53
HPS4-216ENST00000493455 DIP2BQ9P265 1576 aa24.59■■□□□ 1.53
HPS4-216ENST00000493455 KIF13AQ9H1H9 1805 aa24.58■■□□□ 1.53
HPS4-216ENST00000493455 LRRC9Q6ZRR7 1453 aa24.58■■□□□ 1.52
HPS4-216ENST00000493455 FAM69CQ0P6D2 419 aa24.56■■□□□ 1.52
HPS4-216ENST00000493455 ABCC10Q5T3U5 1492 aa24.56■■□□□ 1.52
HPS4-216ENST00000493455 TSPOAP1O95153 1857 aa24.53■■□□□ 1.52
HPS4-216ENST00000493455 SUPT6HQ7KZ85 1726 aaKnown RBP24.53■■□□□ 1.52
HPS4-216ENST00000493455 TTC37Q6PGP7 1564 aa24.52■■□□□ 1.52
HPS4-216ENST00000493455 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.51■■□□□ 1.51
HPS4-216ENST00000493455 ABCA9Q8IUA7 1624 aa24.48■■□□□ 1.51
HPS4-216ENST00000493455 GLI2P10070 1586 aa24.47■■□□□ 1.51
HPS4-216ENST00000493455 NCOA2Q15596 1464 aa24.45■■□□□ 1.51
HPS4-216ENST00000493455 MYO5CQ9NQX4 1742 aa24.45■■□□□ 1.5
HPS4-216ENST00000493455 MAP3K4Q9Y6R4 1608 aa24.45■■□□□ 1.5
HPS4-216ENST00000493455 CDC42BPAQ5VT25 1732 aa24.41■■□□□ 1.5
HPS4-216ENST00000493455 CD109Q6YHK3 1445 aa24.41■■□□□ 1.5
HPS4-216ENST00000493455 CCNB3Q8WWL7 1395 aa24.41■■□□□ 1.5
HPS4-216ENST00000493455 ITSN2Q9NZM3 1697 aa24.37■■□□□ 1.49
HPS4-216ENST00000493455 PREX2Q70Z35 1606 aa24.36■■□□□ 1.49
HPS4-216ENST00000493455 CDC42BPBQ9Y5S2 1711 aa24.36■■□□□ 1.49
HPS4-216ENST00000493455 PPRC1Q5VV67 1664 aaKnown RBP24.36■■□□□ 1.49
HPS4-216ENST00000493455 ARHGAP5Q13017 1502 aa24.35■■□□□ 1.49
HPS4-216ENST00000493455 PHLDB1Q86UU1 1377 aa24.32■■□□□ 1.48
HPS4-216ENST00000493455 GPATCH8Q9UKJ3 1502 aaKnown RBP24.32■■□□□ 1.48
HPS4-216ENST00000493455 ZNF777Q9ULD5 760 aaPredicted RBP24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms