RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 CEP170Q5SW79 1584 aa13.43□□□□□ -0.26
TM4SF1-204ENST00000493348 CSRNP3Q8WYN3 585 aa13.43□□□□□ -0.26
TM4SF1-204ENST00000493348 NUP160Q12769 1436 aa13.42□□□□□ -0.26
TM4SF1-204ENST00000493348 RIMBP3CA6NJZ7 1639 aa13.4□□□□□ -0.26
TM4SF1-204ENST00000493348 RIMBP3BA6NNM3 1639 aa13.4□□□□□ -0.26
TM4SF1-204ENST00000493348 RIMBP3Q9UFD9 1639 aa13.4□□□□□ -0.26
TM4SF1-204ENST00000493348 ARHGEF11O15085 1522 aa13.39□□□□□ -0.27
TM4SF1-204ENST00000493348 KIAA0586Q9BVV6 1533 aa13.36□□□□□ -0.27
TM4SF1-204ENST00000493348 CTTNBP2Q8WZ74 1663 aa13.36□□□□□ -0.27
TM4SF1-204ENST00000493348 JPH4Q96JJ6 628 aa13.35□□□□□ -0.27
TM4SF1-204ENST00000493348 PRXQ9BXM0 1461 aa13.35□□□□□ -0.27
TM4SF1-204ENST00000493348 IQGAP2Q13576 1575 aa13.34□□□□□ -0.27
TM4SF1-204ENST00000493348 SHROOM2Q13796 1616 aa13.32□□□□□ -0.28
TM4SF1-204ENST00000493348 PRG4Q92954 1404 aaPredicted RBP13.31□□□□□ -0.28
TM4SF1-204ENST00000493348 CYB5RLQ6IPT4 315 aa13.31□□□□□ -0.28
TM4SF1-204ENST00000493348 KIF21BO75037 1637 aa13.31□□□□□ -0.28
TM4SF1-204ENST00000493348 CARMIL2Q6F5E8 1435 aa13.3□□□□□ -0.28
TM4SF1-204ENST00000493348 UBTFP17480 764 aaKnown RBP13.29□□□□□ -0.28
TM4SF1-204ENST00000493348 PIAS4Q8N2W9 510 aaPredicted RBP13.29□□□□□ -0.28
TM4SF1-204ENST00000493348 EHMT2Q96KQ7 1210 aa13.29□□□□□ -0.28
TM4SF1-204ENST00000493348 GOLGA3Q08378 1498 aa13.26□□□□□ -0.29
TM4SF1-204ENST00000493348 ARAP1Q96P48 1450 aa13.26□□□□□ -0.29
TM4SF1-204ENST00000493348 TTBK1Q5TCY1 1321 aaPredicted RBP13.24□□□□□ -0.29
TM4SF1-204ENST00000493348 ERCC6L2Q5T890 1561 aa13.24□□□□□ -0.29
TM4SF1-204ENST00000493348 RANGAP1P46060 587 aaPredicted RBP13.23□□□□□ -0.29
TM4SF1-204ENST00000493348 UGGT2Q9NYU1 1516 aa13.22□□□□□ -0.29
TM4SF1-204ENST00000493348 TNIKQ9UKE5 1360 aa13.2□□□□□ -0.3
TM4SF1-204ENST00000493348 KIAA0556O60303 1618 aa13.19□□□□□ -0.3
TM4SF1-204ENST00000493348 PTPRGP23470 1445 aa13.19□□□□□ -0.3
TM4SF1-204ENST00000493348 NPM1P06748 294 aaKnown RBP eCLIP13.18□□□□□ -0.3
TM4SF1-204ENST00000493348 PLPPR3Q6T4P5 718 aa13.17□□□□□ -0.3
TM4SF1-204ENST00000493348 DISP1Q96F81 1524 aa13.16□□□□□ -0.3
TM4SF1-204ENST00000493348 P3H3Q8IVL6 736 aa13.14□□□□□ -0.31
TM4SF1-204ENST00000493348 PPP6R1Q9UPN7 881 aa13.12□□□□□ -0.31
TM4SF1-204ENST00000493348 EFCAB5A4FU69 1503 aa13.12□□□□□ -0.31
TM4SF1-204ENST00000493348 SAMD9Q5K651 1589 aa13.11□□□□□ -0.31
TM4SF1-204ENST00000493348 TRHP20396 242 aaPredicted RBP13.09□□□□□ -0.31
TM4SF1-204ENST00000493348 UACAQ9BZF9 1416 aa13.09□□□□□ -0.31
TM4SF1-204ENST00000493348 ADRA2BP18089 450 aa13.08□□□□□ -0.32
TM4SF1-204ENST00000493348 ADCY10Q96PN6 1610 aa13.07□□□□□ -0.32
TM4SF1-204ENST00000493348 FHOD3Q2V2M9 1422 aa13.05□□□□□ -0.32
TM4SF1-204ENST00000493348 ABCC2Q92887 1545 aa13.05□□□□□ -0.32
TM4SF1-204ENST00000493348 UHRF1BP1LA0JNW5 1464 aa13.04□□□□□ -0.32
TM4SF1-204ENST00000493348 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
TM4SF1-204ENST00000493348 HNRNPUL2Q1KMD3 747 aaKnown RBP13.03□□□□□ -0.32
TM4SF1-204ENST00000493348 ATP1B4Q9UN42 357 aaPredicted RBP13.02□□□□□ -0.33
TM4SF1-204ENST00000493348 CLIP1P30622 1438 aa13.02□□□□□ -0.33
TM4SF1-204ENST00000493348 FMN1Q68DA7 1419 aa13.02□□□□□ -0.33
TM4SF1-204ENST00000493348 PLB1Q6P1J6 1458 aa13.02□□□□□ -0.33
TM4SF1-204ENST00000493348 RAPGEF6Q8TEU7 1601 aa13.02□□□□□ -0.33
TM4SF1-204ENST00000493348 ABCA8O94911 1581 aa13□□□□□ -0.33
TM4SF1-204ENST00000493348 ARHGAP35Q9NRY4 1499 aa13□□□□□ -0.33
TM4SF1-204ENST00000493348 LOC105371045A0A1W2PR82 267 aa13□□□□□ -0.33
TM4SF1-204ENST00000493348 ZCCHC11Q5TAX3 1644 aaKnown RBP12.99□□□□□ -0.33
TM4SF1-204ENST00000493348 MAPKBP1O60336 1514 aa12.98□□□□□ -0.33
TM4SF1-204ENST00000493348 ARID3CA6NKF2 412 aa12.97□□□□□ -0.33
TM4SF1-204ENST00000493348 KDM5BQ9UGL1 1544 aa12.97□□□□□ -0.33
TM4SF1-204ENST00000493348 CEP162Q5TB80 1403 aa12.96□□□□□ -0.33
TM4SF1-204ENST00000493348 HECW1Q76N89 1606 aa12.95□□□□□ -0.34
TM4SF1-204ENST00000493348 ASXL2Q76L83 1435 aa12.94□□□□□ -0.34
TM4SF1-204ENST00000493348 FAM69CQ0P6D2 419 aa12.93□□□□□ -0.34
TM4SF1-204ENST00000493348 CDK11AQ9UQ88 783 aaPredicted RBP12.92□□□□□ -0.34
TM4SF1-204ENST00000493348 KIF13AQ9H1H9 1805 aa12.92□□□□□ -0.34
TM4SF1-204ENST00000493348 ABCC10Q5T3U5 1492 aa12.91□□□□□ -0.34
TM4SF1-204ENST00000493348 PLEKHD1A6NEE1 506 aa12.9□□□□□ -0.34
TM4SF1-204ENST00000493348 KCNH8Q96L42 1107 aa12.9□□□□□ -0.34
TM4SF1-204ENST00000493348 ATP10BO94823 1461 aa12.9□□□□□ -0.34
TM4SF1-204ENST00000493348 NUP153P49790 1475 aaKnown RBP12.9□□□□□ -0.34
TM4SF1-204ENST00000493348 WDR7Q9Y4E6 1490 aa12.9□□□□□ -0.34
TM4SF1-204ENST00000493348 DIP2BQ9P265 1576 aa12.9□□□□□ -0.35
TM4SF1-204ENST00000493348 TSPOAP1O95153 1857 aa12.89□□□□□ -0.35
TM4SF1-204ENST00000493348 CASKIN1Q8WXD9 1431 aa12.88□□□□□ -0.35
TM4SF1-204ENST00000493348 PCF11O94913 1555 aaKnown RBP12.87□□□□□ -0.35
TM4SF1-204ENST00000493348 CCDC18Q5T9S5 1454 aa12.87□□□□□ -0.35
TM4SF1-204ENST00000493348 FYCO1Q9BQS8 1478 aa12.87□□□□□ -0.35
TM4SF1-204ENST00000493348 EPRSP07814 1512 aaKnown RBP12.86□□□□□ -0.35
TM4SF1-204ENST00000493348 CDK13Q14004 1512 aaKnown RBP12.84□□□□□ -0.35
TM4SF1-204ENST00000493348 APLP2Q06481 763 aa12.84□□□□□ -0.35
TM4SF1-204ENST00000493348 GLI2P10070 1586 aa12.84□□□□□ -0.35
TM4SF1-204ENST00000493348 CFAP43Q8NDM7 1665 aa12.83□□□□□ -0.36
TM4SF1-204ENST00000493348 LRRIQ1Q96JM4 1722 aa12.81□□□□□ -0.36
TM4SF1-204ENST00000493348 VPS8Q8N3P4 1428 aa12.8□□□□□ -0.36
TM4SF1-204ENST00000493348 TEX14Q8IWB6 1497 aa12.8□□□□□ -0.36
TM4SF1-204ENST00000493348 CD109Q6YHK3 1445 aa12.79□□□□□ -0.36
TM4SF1-204ENST00000493348 MAP3K4Q9Y6R4 1608 aa12.79□□□□□ -0.36
TM4SF1-204ENST00000493348 KIF14Q15058 1648 aa12.78□□□□□ -0.36
TM4SF1-204ENST00000493348 MTUS2Q5JR59 1369 aa12.77□□□□□ -0.37
TM4SF1-204ENST00000493348 ABCA9Q8IUA7 1624 aa12.77□□□□□ -0.37
TM4SF1-204ENST00000493348 TROQ12816 1431 aaPredicted RBP12.76□□□□□ -0.37
TM4SF1-204ENST00000493348 MYO5CQ9NQX4 1742 aa12.74□□□□□ -0.37
TM4SF1-204ENST00000493348 KDM6BO15054 1643 aa12.73□□□□□ -0.37
TM4SF1-204ENST00000493348 CFAP74Q9C0B2 1584 aa12.73□□□□□ -0.37
TM4SF1-204ENST00000493348 PPRC1Q5VV67 1664 aaKnown RBP12.72□□□□□ -0.37
TM4SF1-204ENST00000493348 MAGI3Q5TCQ9 1506 aa12.72□□□□□ -0.37
TM4SF1-204ENST00000493348 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.72□□□□□ -0.37
TM4SF1-204ENST00000493348 TIAM1Q13009 1591 aa12.71□□□□□ -0.37
TM4SF1-204ENST00000493348 TTC37Q6PGP7 1564 aa12.71□□□□□ -0.37
TM4SF1-204ENST00000493348 EHBP1L1Q8N3D4 1523 aa12.71□□□□□ -0.38
TM4SF1-204ENST00000493348 SUPT6HQ7KZ85 1726 aaKnown RBP12.69□□□□□ -0.38
TM4SF1-204ENST00000493348 PHLDB1Q86UU1 1377 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms