RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 BIVM-ERCC5R4GMW8 1640 aa13.76□□□□□ -0.21
VTI1A-207ENST00000489357 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
VTI1A-207ENST00000489357 FGD5Q6ZNL6 1462 aa13.75□□□□□ -0.21
VTI1A-207ENST00000489357 WRNQ14191 1432 aaPredicted RBP eCLIP13.75□□□□□ -0.21
VTI1A-207ENST00000489357 POLA2Q14181 598 aa13.74□□□□□ -0.21
VTI1A-207ENST00000489357 SYNJ1O43426 1573 aa13.73□□□□□ -0.21
VTI1A-207ENST00000489357 ZNF608Q9ULD9 1512 aaPredicted RBP13.73□□□□□ -0.21
VTI1A-207ENST00000489357 SOGA1O94964 1423 aa13.73□□□□□ -0.21
VTI1A-207ENST00000489357 RAD54L2Q9Y4B4 1467 aa13.72□□□□□ -0.21
VTI1A-207ENST00000489357 ABCB7O75027 752 aa13.71□□□□□ -0.21
VTI1A-207ENST00000489357 DSG3P32926 999 aa13.71□□□□□ -0.21
VTI1A-207ENST00000489357 WDR97A6NE52 1622 aa13.69□□□□□ -0.22
VTI1A-207ENST00000489357 ABCA10Q8WWZ4 1543 aa13.67□□□□□ -0.22
VTI1A-207ENST00000489357 EIF4G3O43432 1585 aaKnown RBP13.66□□□□□ -0.22
VTI1A-207ENST00000489357 AQRO60306 1485 aaKnown RBP eCLIP13.65□□□□□ -0.22
VTI1A-207ENST00000489357 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
VTI1A-207ENST00000489357 EEA1Q15075 1411 aa13.61□□□□□ -0.23
VTI1A-207ENST00000489357 ABCA5Q8WWZ7 1642 aa13.6□□□□□ -0.23
VTI1A-207ENST00000489357 GAPVD1Q14C86 1478 aa13.57□□□□□ -0.24
VTI1A-207ENST00000489357 GRIN2BQ13224 1484 aa13.55□□□□□ -0.24
VTI1A-207ENST00000489357 PBRM1Q86U86 1689 aa13.54□□□□□ -0.24
VTI1A-207ENST00000489357 LOC105371045A0A1W2PR82 267 aa13.54□□□□□ -0.24
VTI1A-207ENST00000489357 ZBTB12Q9Y330 459 aaPredicted RBP13.53□□□□□ -0.24
VTI1A-207ENST00000489357 MAGI1Q96QZ7 1491 aaPredicted RBP13.53□□□□□ -0.24
VTI1A-207ENST00000489357 OSCARQ8IYS5 282 aa13.52□□□□□ -0.25
VTI1A-207ENST00000489357 FBLN2P98095 1184 aa13.51□□□□□ -0.25
VTI1A-207ENST00000489357 ERICH3Q5RHP9 1530 aa13.5□□□□□ -0.25
VTI1A-207ENST00000489357 SNAPC4Q5SXM2 1469 aa13.49□□□□□ -0.25
VTI1A-207ENST00000489357 CHD1O14646 1710 aa13.49□□□□□ -0.25
VTI1A-207ENST00000489357 MKRN4PQ13434 485 aaPredicted RBP13.48□□□□□ -0.25
VTI1A-207ENST00000489357 SYNJ2O15056 1496 aa13.46□□□□□ -0.25
VTI1A-207ENST00000489357 IGF1RP08069 1367 aa13.45□□□□□ -0.26
VTI1A-207ENST00000489357 KIF27Q86VH2 1401 aa13.45□□□□□ -0.26
VTI1A-207ENST00000489357 ADAMTS12P58397 1594 aa13.43□□□□□ -0.26
VTI1A-207ENST00000489357 FHAD1B1AJZ9 1412 aa13.42□□□□□ -0.26
VTI1A-207ENST00000489357 CHMP7Q8WUX9 453 aaPredicted RBP13.4□□□□□ -0.26
VTI1A-207ENST00000489357 RUSC2Q8N2Y8 1516 aa13.39□□□□□ -0.27
VTI1A-207ENST00000489357 GRIN2AQ12879 1464 aa13.38□□□□□ -0.27
VTI1A-207ENST00000489357 CLASP1Q7Z460 1538 aa13.38□□□□□ -0.27
VTI1A-207ENST00000489357 FAM9AQ8IZU1 332 aaPredicted RBP13.37□□□□□ -0.27
VTI1A-207ENST00000489357 NUP160Q12769 1436 aa13.37□□□□□ -0.27
VTI1A-207ENST00000489357 CUL7Q14999 1698 aa13.37□□□□□ -0.27
VTI1A-207ENST00000489357 RIMBP3CA6NJZ7 1639 aa13.36□□□□□ -0.27
VTI1A-207ENST00000489357 RIMBP3BA6NNM3 1639 aa13.36□□□□□ -0.27
VTI1A-207ENST00000489357 KIF21BO75037 1637 aa13.36□□□□□ -0.27
VTI1A-207ENST00000489357 RIMBP3Q9UFD9 1639 aa13.36□□□□□ -0.27
VTI1A-207ENST00000489357 TRIM26Q12899 539 aaPredicted RBP13.36□□□□□ -0.27
VTI1A-207ENST00000489357 FKBP8Q14318 412 aa13.35□□□□□ -0.27
VTI1A-207ENST00000489357 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
VTI1A-207ENST00000489357 TNIKQ9UKE5 1360 aa13.34□□□□□ -0.27
VTI1A-207ENST00000489357 CARMIL1Q5VZK9 1371 aa13.33□□□□□ -0.27
VTI1A-207ENST00000489357 GOLGA3Q08378 1498 aa13.33□□□□□ -0.28
VTI1A-207ENST00000489357 CEP170Q5SW79 1584 aa13.32□□□□□ -0.28
VTI1A-207ENST00000489357 PCGF6Q9BYE7 350 aa13.29□□□□□ -0.28
VTI1A-207ENST00000489357 PRXQ9BXM0 1461 aa13.28□□□□□ -0.28
VTI1A-207ENST00000489357 HRCP23327 699 aa13.27□□□□□ -0.29
VTI1A-207ENST00000489357 SHROOM2Q13796 1616 aa13.27□□□□□ -0.29
VTI1A-207ENST00000489357 RAPGEF2Q9Y4G8 1499 aa13.25□□□□□ -0.29
VTI1A-207ENST00000489357 SPDYE4A6NLX3 237 aa13.25□□□□□ -0.29
VTI1A-207ENST00000489357 KIAA0586Q9BVV6 1533 aa13.24□□□□□ -0.29
VTI1A-207ENST00000489357 CEP162Q5TB80 1403 aa13.24□□□□□ -0.29
VTI1A-207ENST00000489357 ARAP1Q96P48 1450 aa13.23□□□□□ -0.29
VTI1A-207ENST00000489357 CYB5RLQ6IPT4 315 aa13.2□□□□□ -0.3
VTI1A-207ENST00000489357 JPH4Q96JJ6 628 aa13.2□□□□□ -0.3
VTI1A-207ENST00000489357 ERCC6L2Q5T890 1561 aa13.17□□□□□ -0.3
VTI1A-207ENST00000489357 SPDYE2BA6NHP3 402 aa13.16□□□□□ -0.3
VTI1A-207ENST00000489357 SPDYE6P0CI01 402 aa13.16□□□□□ -0.3
VTI1A-207ENST00000489357 SPDYE2Q495Y8 402 aa13.16□□□□□ -0.3
VTI1A-207ENST00000489357 ZNF692Q9BU19 519 aaPredicted RBP13.14□□□□□ -0.31
VTI1A-207ENST00000489357 IQGAP2Q13576 1575 aa13.14□□□□□ -0.31
VTI1A-207ENST00000489357 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
VTI1A-207ENST00000489357 CTTNBP2Q8WZ74 1663 aa13.13□□□□□ -0.31
VTI1A-207ENST00000489357 UBTFP17480 764 aaKnown RBP13.12□□□□□ -0.31
VTI1A-207ENST00000489357 UGGT2Q9NYU1 1516 aa13.12□□□□□ -0.31
VTI1A-207ENST00000489357 ZEB1P37275 1124 aaPredicted RBP13.1□□□□□ -0.31
VTI1A-207ENST00000489357 DISP1Q96F81 1524 aa13.08□□□□□ -0.31
VTI1A-207ENST00000489357 CLIP1P30622 1438 aa13.08□□□□□ -0.32
VTI1A-207ENST00000489357 RBM42Q9BTD8 480 aaKnown RBP13.08□□□□□ -0.32
VTI1A-207ENST00000489357 SSUH2Q9Y2M2 353 aa13.06□□□□□ -0.32
VTI1A-207ENST00000489357 VPS8Q8N3P4 1428 aa13.05□□□□□ -0.32
VTI1A-207ENST00000489357 CARMIL2Q6F5E8 1435 aa13.04□□□□□ -0.32
VTI1A-207ENST00000489357 PROM2Q8N271 834 aa13.02□□□□□ -0.33
VTI1A-207ENST00000489357 KIAA0556O60303 1618 aa13.02□□□□□ -0.33
VTI1A-207ENST00000489357 SAMD9Q5K651 1589 aa12.99□□□□□ -0.33
VTI1A-207ENST00000489357 PTPRGP23470 1445 aa12.99□□□□□ -0.33
VTI1A-207ENST00000489357 ADCY10Q96PN6 1610 aa12.96□□□□□ -0.33
VTI1A-207ENST00000489357 UHRF1BP1LA0JNW5 1464 aa12.96□□□□□ -0.34
VTI1A-207ENST00000489357 AKT1S1Q96B36 256 aa12.94□□□□□ -0.34
VTI1A-207ENST00000489357 UACAQ9BZF9 1416 aa12.92□□□□□ -0.34
VTI1A-207ENST00000489357 ABCA8O94911 1581 aa12.91□□□□□ -0.34
VTI1A-207ENST00000489357 EFCAB5A4FU69 1503 aa12.91□□□□□ -0.34
VTI1A-207ENST00000489357 ABCC2Q92887 1545 aa12.9□□□□□ -0.34
VTI1A-207ENST00000489357 MAP3K1Q13233 1512 aa12.88□□□□□ -0.35
VTI1A-207ENST00000489357 KDM5BQ9UGL1 1544 aa12.88□□□□□ -0.35
VTI1A-207ENST00000489357 ARHGAP35Q9NRY4 1499 aa12.88□□□□□ -0.35
VTI1A-207ENST00000489357 MAPKBP1O60336 1514 aa12.88□□□□□ -0.35
VTI1A-207ENST00000489357 TTBK1Q5TCY1 1321 aaPredicted RBP12.88□□□□□ -0.35
VTI1A-207ENST00000489357 PLB1Q6P1J6 1458 aa12.87□□□□□ -0.35
VTI1A-207ENST00000489357 FBXO3Q9UK99 471 aa12.87□□□□□ -0.35
VTI1A-207ENST00000489357 P3H3Q8IVL6 736 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms