RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 FAM69CQ0P6D2 419 aa17.49■□□□□ 0.39
CPSF4-213ENST00000484112 KIF13AQ9H1H9 1805 aa17.45■□□□□ 0.38
CPSF4-213ENST00000484112 RUSC2Q8N2Y8 1516 aa17.42■□□□□ 0.38
CPSF4-213ENST00000484112 ABCC10Q5T3U5 1492 aa17.4■□□□□ 0.38
CPSF4-213ENST00000484112 TTBK1Q5TCY1 1321 aaPredicted RBP17.39■□□□□ 0.37
CPSF4-213ENST00000484112 IGF1RP08069 1367 aa17.36■□□□□ 0.37
CPSF4-213ENST00000484112 KIAA0586Q9BVV6 1533 aa17.35■□□□□ 0.37
CPSF4-213ENST00000484112 MAPKBP1O60336 1514 aa17.34■□□□□ 0.37
CPSF4-213ENST00000484112 ADCY10Q96PN6 1610 aa17.34■□□□□ 0.37
CPSF4-213ENST00000484112 KIF27Q86VH2 1401 aa17.33■□□□□ 0.36
CPSF4-213ENST00000484112 DIP2BQ9P265 1576 aa17.32■□□□□ 0.36
CPSF4-213ENST00000484112 PTPRGP23470 1445 aa17.29■□□□□ 0.36
CPSF4-213ENST00000484112 CUL7Q14999 1698 aa17.26■□□□□ 0.35
CPSF4-213ENST00000484112 TSPOAP1O95153 1857 aa17.26■□□□□ 0.35
CPSF4-213ENST00000484112 CARMIL1Q5VZK9 1371 aa17.26■□□□□ 0.35
CPSF4-213ENST00000484112 KDM6BO15054 1643 aa17.25■□□□□ 0.35
CPSF4-213ENST00000484112 KDM4FA0A1W2PPD8 638 aa17.24■□□□□ 0.35
CPSF4-213ENST00000484112 TNIKQ9UKE5 1360 aa17.22■□□□□ 0.35
CPSF4-213ENST00000484112 CARMIL2Q6F5E8 1435 aa17.21■□□□□ 0.35
CPSF4-213ENST00000484112 ABCC2Q92887 1545 aa17.16■□□□□ 0.34
CPSF4-213ENST00000484112 ASXL2Q76L83 1435 aa17.16■□□□□ 0.34
CPSF4-213ENST00000484112 PLB1Q6P1J6 1458 aa17.13■□□□□ 0.33
CPSF4-213ENST00000484112 IQGAP2Q13576 1575 aa17.13■□□□□ 0.33
CPSF4-213ENST00000484112 UACAQ9BZF9 1416 aa17.13■□□□□ 0.33
CPSF4-213ENST00000484112 UHRF1BP1LA0JNW5 1464 aa17.09■□□□□ 0.33
CPSF4-213ENST00000484112 DISP1Q96F81 1524 aa17.08■□□□□ 0.32
CPSF4-213ENST00000484112 GLI2P10070 1586 aa17.07■□□□□ 0.32
CPSF4-213ENST00000484112 RAPGEF2Q9Y4G8 1499 aa17.05■□□□□ 0.32
CPSF4-213ENST00000484112 PPRC1Q5VV67 1664 aaKnown RBP17.04■□□□□ 0.32
CPSF4-213ENST00000484112 EPRSP07814 1512 aaKnown RBP17.03■□□□□ 0.32
CPSF4-213ENST00000484112 COL17A1Q9UMD9 1497 aaPredicted RBP17.02■□□□□ 0.32
CPSF4-213ENST00000484112 KDM5BQ9UGL1 1544 aa17.01■□□□□ 0.31
CPSF4-213ENST00000484112 ADGRL1O94910 1474 aa17.01■□□□□ 0.31
CPSF4-213ENST00000484112 UGGT2Q9NYU1 1516 aa17.01■□□□□ 0.31
CPSF4-213ENST00000484112 ZCCHC11Q5TAX3 1644 aaKnown RBP16.99■□□□□ 0.31
CPSF4-213ENST00000484112 TEX14Q8IWB6 1497 aa16.99■□□□□ 0.31
CPSF4-213ENST00000484112 KIAA0556O60303 1618 aa16.98■□□□□ 0.31
CPSF4-213ENST00000484112 ILDR1Q86SU0 546 aaPredicted RBP16.97■□□□□ 0.31
CPSF4-213ENST00000484112 KCNH8Q96L42 1107 aa16.97■□□□□ 0.31
CPSF4-213ENST00000484112 MAP3K4Q9Y6R4 1608 aa16.96■□□□□ 0.31
CPSF4-213ENST00000484112 WDR7Q9Y4E6 1490 aa16.93■□□□□ 0.3
CPSF4-213ENST00000484112 CD109Q6YHK3 1445 aa16.89■□□□□ 0.29
CPSF4-213ENST00000484112 GOLGA3Q08378 1498 aa16.88■□□□□ 0.29
CPSF4-213ENST00000484112 ARID3CA6NKF2 412 aa16.88■□□□□ 0.29
CPSF4-213ENST00000484112 P3H3Q8IVL6 736 aa16.86■□□□□ 0.29
CPSF4-213ENST00000484112 CTTNBP2Q8WZ74 1663 aa16.85■□□□□ 0.29
CPSF4-213ENST00000484112 FAM9AQ8IZU1 332 aaPredicted RBP16.85■□□□□ 0.29
CPSF4-213ENST00000484112 ABCA8O94911 1581 aa16.84■□□□□ 0.29
CPSF4-213ENST00000484112 MAGI3Q5TCQ9 1506 aa16.83■□□□□ 0.28
CPSF4-213ENST00000484112 HECW2Q9P2P5 1572 aa16.83■□□□□ 0.28
CPSF4-213ENST00000484112 CFAP43Q8NDM7 1665 aa16.8■□□□□ 0.28
CPSF4-213ENST00000484112 PRXQ9BXM0 1461 aa16.79■□□□□ 0.28
CPSF4-213ENST00000484112 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
CPSF4-213ENST00000484112 HNRNPUL2Q1KMD3 747 aaKnown RBP16.76■□□□□ 0.27
CPSF4-213ENST00000484112 ATP10BO94823 1461 aa16.73■□□□□ 0.27
CPSF4-213ENST00000484112 RANGAP1P46060 587 aaPredicted RBP16.73■□□□□ 0.27
CPSF4-213ENST00000484112 KIF21BO75037 1637 aa16.73■□□□□ 0.27
CPSF4-213ENST00000484112 RAPGEF3O95398 923 aa16.71■□□□□ 0.27
CPSF4-213ENST00000484112 EEA1Q15075 1411 aa16.7■□□□□ 0.26
CPSF4-213ENST00000484112 ARAP3Q8WWN8 1544 aa16.7■□□□□ 0.26
CPSF4-213ENST00000484112 CSRNP3Q8WYN3 585 aa16.69■□□□□ 0.26
CPSF4-213ENST00000484112 ARID4BQ4LE39 1312 aaPredicted RBP16.67■□□□□ 0.26
CPSF4-213ENST00000484112 PHLDB1Q86UU1 1377 aa16.65■□□□□ 0.26
CPSF4-213ENST00000484112 CHIC1Q5VXU3 224 aa16.65■□□□□ 0.26
CPSF4-213ENST00000484112 ABCA9Q8IUA7 1624 aa16.64■□□□□ 0.25
CPSF4-213ENST00000484112 RAPGEF6Q8TEU7 1601 aa16.63■□□□□ 0.25
CPSF4-213ENST00000484112 PTPRMP28827 1452 aa16.61■□□□□ 0.25
CPSF4-213ENST00000484112 NEO1Q92859 1461 aa16.61■□□□□ 0.25
CPSF4-213ENST00000484112 SAMD9Q5K651 1589 aa16.6■□□□□ 0.25
CPSF4-213ENST00000484112 PLEKHD1A6NEE1 506 aa16.6■□□□□ 0.25
CPSF4-213ENST00000484112 PLPPR3Q6T4P5 718 aa16.58■□□□□ 0.24
CPSF4-213ENST00000484112 FHOD3Q2V2M9 1422 aa16.58■□□□□ 0.24
CPSF4-213ENST00000484112 ADAMTSL3P82987 1691 aa16.57■□□□□ 0.24
CPSF4-213ENST00000484112 NUP153P49790 1475 aaKnown RBP16.57■□□□□ 0.24
CPSF4-213ENST00000484112 FBXO41Q8TF61 875 aa16.57■□□□□ 0.24
CPSF4-213ENST00000484112 FRMPD1Q5SYB0 1578 aa16.53■□□□□ 0.24
CPSF4-213ENST00000484112 DENND4BO75064 1496 aaPredicted RBP16.53■□□□□ 0.24
CPSF4-213ENST00000484112 AKNAQ7Z591 1439 aa16.53■□□□□ 0.24
CPSF4-213ENST00000484112 BCORL1Q5H9F3 1711 aa16.52■□□□□ 0.24
CPSF4-213ENST00000484112 MADDQ8WXG6 1647 aa16.52■□□□□ 0.23
CPSF4-213ENST00000484112 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
CPSF4-213ENST00000484112 FANCAO15360 1455 aa16.49■□□□□ 0.23
CPSF4-213ENST00000484112 MLECQ14165 292 aa16.49■□□□□ 0.23
CPSF4-213ENST00000484112 HSPA2P54652 639 aa16.48■□□□□ 0.23
CPSF4-213ENST00000484112 ATP1B4Q9UN42 357 aaPredicted RBP16.48■□□□□ 0.23
CPSF4-213ENST00000484112 PCF11O94913 1555 aaKnown RBP16.47■□□□□ 0.23
CPSF4-213ENST00000484112 RIMS1Q86UR5 1692 aaKnown RBP16.46■□□□□ 0.23
CPSF4-213ENST00000484112 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.46■□□□□ 0.23
CPSF4-213ENST00000484112 ARHGEF40Q8TER5 1519 aa16.46■□□□□ 0.23
CPSF4-213ENST00000484112 LMTK3Q96Q04 1460 aa16.46■□□□□ 0.23
CPSF4-213ENST00000484112 POGZQ7Z3K3 1410 aa16.45■□□□□ 0.22
CPSF4-213ENST00000484112 RICTORQ6R327 1708 aa16.44■□□□□ 0.22
CPSF4-213ENST00000484112 YEATS2Q9ULM3 1422 aa16.44■□□□□ 0.22
CPSF4-213ENST00000484112 TTC37Q6PGP7 1564 aa16.43■□□□□ 0.22
CPSF4-213ENST00000484112 CFAP74Q9C0B2 1584 aa16.43■□□□□ 0.22
CPSF4-213ENST00000484112 CDK13Q14004 1512 aaKnown RBP16.42■□□□□ 0.22
CPSF4-213ENST00000484112 ZFYVE16Q7Z3T8 1539 aa16.42■□□□□ 0.22
CPSF4-213ENST00000484112 UBTFP17480 764 aaKnown RBP16.41■□□□□ 0.22
CPSF4-213ENST00000484112 SCAPERQ9BY12 1400 aa16.41■□□□□ 0.22
CPSF4-213ENST00000484112 EFCAB5A4FU69 1503 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms