RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 KIF27Q86VH2 1401 aa23.21■■□□□ 1.31
VCL-205ENST00000478896 KIF13AQ9H1H9 1805 aa23.15■■□□□ 1.3
VCL-205ENST00000478896 IGF1RP08069 1367 aa23.14■■□□□ 1.29
VCL-205ENST00000478896 KIAA0586Q9BVV6 1533 aa23.13■■□□□ 1.29
VCL-205ENST00000478896 AEBP2Q6ZN18 517 aaPredicted RBP23.11■■□□□ 1.29
VCL-205ENST00000478896 NPM1P06748 294 aaKnown RBP eCLIP23.09■■□□□ 1.29
VCL-205ENST00000478896 ADCY10Q96PN6 1610 aa23.07■■□□□ 1.28
VCL-205ENST00000478896 MAPKBP1O60336 1514 aa23.03■■□□□ 1.28
VCL-205ENST00000478896 CARMIL1Q5VZK9 1371 aa23.02■■□□□ 1.28
VCL-205ENST00000478896 ABCC10Q5T3U5 1492 aa23.01■■□□□ 1.27
VCL-205ENST00000478896 FAM69CQ0P6D2 419 aa23■■□□□ 1.27
VCL-205ENST00000478896 DIP2BQ9P265 1576 aa22.98■■□□□ 1.27
VCL-205ENST00000478896 IQGAP2Q13576 1575 aa22.95■■□□□ 1.26
VCL-205ENST00000478896 TTBK1Q5TCY1 1321 aaPredicted RBP22.94■■□□□ 1.26
VCL-205ENST00000478896 CARMIL2Q6F5E8 1435 aa22.93■■□□□ 1.26
VCL-205ENST00000478896 PTPRGP23470 1445 aa22.92■■□□□ 1.26
VCL-205ENST00000478896 TNIKQ9UKE5 1360 aa22.89■■□□□ 1.26
VCL-205ENST00000478896 TSPOAP1O95153 1857 aa22.88■■□□□ 1.25
VCL-205ENST00000478896 KDM6BO15054 1643 aa22.84■■□□□ 1.25
VCL-205ENST00000478896 RAPGEF2Q9Y4G8 1499 aa22.84■■□□□ 1.25
VCL-205ENST00000478896 ABCC2Q92887 1545 aa22.82■■□□□ 1.24
VCL-205ENST00000478896 DISP1Q96F81 1524 aa22.78■■□□□ 1.24
VCL-205ENST00000478896 UACAQ9BZF9 1416 aa22.76■■□□□ 1.23
VCL-205ENST00000478896 UGGT2Q9NYU1 1516 aa22.76■■□□□ 1.23
VCL-205ENST00000478896 ASXL2Q76L83 1435 aa22.75■■□□□ 1.23
VCL-205ENST00000478896 UHRF1BP1LA0JNW5 1464 aa22.75■■□□□ 1.23
VCL-205ENST00000478896 KIAA0556O60303 1618 aa22.75■■□□□ 1.23
VCL-205ENST00000478896 PLB1Q6P1J6 1458 aa22.74■■□□□ 1.23
VCL-205ENST00000478896 CTTNBP2Q8WZ74 1663 aa22.73■■□□□ 1.23
VCL-205ENST00000478896 GLI2P10070 1586 aa22.69■■□□□ 1.22
VCL-205ENST00000478896 ZCCHC11Q5TAX3 1644 aaKnown RBP22.67■■□□□ 1.22
VCL-205ENST00000478896 PPRC1Q5VV67 1664 aaKnown RBP22.66■■□□□ 1.22
VCL-205ENST00000478896 KDM5BQ9UGL1 1544 aa22.66■■□□□ 1.22
VCL-205ENST00000478896 EPRSP07814 1512 aaKnown RBP22.61■■□□□ 1.21
VCL-205ENST00000478896 GOLGA3Q08378 1498 aa22.6■■□□□ 1.21
VCL-205ENST00000478896 MAP3K4Q9Y6R4 1608 aa22.6■■□□□ 1.21
VCL-205ENST00000478896 PRXQ9BXM0 1461 aa22.55■■□□□ 1.2
VCL-205ENST00000478896 TEX14Q8IWB6 1497 aa22.54■■□□□ 1.2
VCL-205ENST00000478896 WDR7Q9Y4E6 1490 aa22.54■■□□□ 1.2
VCL-205ENST00000478896 KDM4FA0A1W2PPD8 638 aa22.52■■□□□ 1.2
VCL-205ENST00000478896 ABCA8O94911 1581 aa22.5■■□□□ 1.19
VCL-205ENST00000478896 CFAP43Q8NDM7 1665 aa22.44■■□□□ 1.18
VCL-205ENST00000478896 COL17A1Q9UMD9 1497 aaPredicted RBP22.44■■□□□ 1.18
VCL-205ENST00000478896 FAM9AQ8IZU1 332 aaPredicted RBP22.43■■□□□ 1.18
VCL-205ENST00000478896 ADGRL1O94910 1474 aa22.41■■□□□ 1.18
VCL-205ENST00000478896 KCNH8Q96L42 1107 aa22.4■■□□□ 1.18
VCL-205ENST00000478896 CD109Q6YHK3 1445 aa22.39■■□□□ 1.17
VCL-205ENST00000478896 P3H3Q8IVL6 736 aa22.38■■□□□ 1.17
VCL-205ENST00000478896 MAGI3Q5TCQ9 1506 aa22.36■■□□□ 1.17
VCL-205ENST00000478896 ARID3CA6NKF2 412 aa22.36■■□□□ 1.17
VCL-205ENST00000478896 CSRNP3Q8WYN3 585 aa22.36■■□□□ 1.17
VCL-205ENST00000478896 SAMD9Q5K651 1589 aa22.33■■□□□ 1.17
VCL-205ENST00000478896 RAPGEF6Q8TEU7 1601 aa22.3■■□□□ 1.16
VCL-205ENST00000478896 EEA1Q15075 1411 aa22.3■■□□□ 1.16
VCL-205ENST00000478896 ATP10BO94823 1461 aa22.28■■□□□ 1.16
VCL-205ENST00000478896 RANGAP1P46060 587 aaPredicted RBP22.25■■□□□ 1.15
VCL-205ENST00000478896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.23■■□□□ 1.15
VCL-205ENST00000478896 HNRNPUL2Q1KMD3 747 aaKnown RBP22.23■■□□□ 1.15
VCL-205ENST00000478896 ABCA9Q8IUA7 1624 aa22.23■■□□□ 1.15
VCL-205ENST00000478896 KIF21BO75037 1637 aa22.2■■□□□ 1.15
VCL-205ENST00000478896 FHOD3Q2V2M9 1422 aa22.19■■□□□ 1.14
VCL-205ENST00000478896 ARAP3Q8WWN8 1544 aa22.18■■□□□ 1.14
VCL-205ENST00000478896 NUP153P49790 1475 aaKnown RBP22.16■■□□□ 1.14
VCL-205ENST00000478896 HECW2Q9P2P5 1572 aa22.13■■□□□ 1.13
VCL-205ENST00000478896 PHLDB1Q86UU1 1377 aa22.12■■□□□ 1.13
VCL-205ENST00000478896 EFCAB5A4FU69 1503 aa22.12■■□□□ 1.13
VCL-205ENST00000478896 NEO1Q92859 1461 aa22.1■■□□□ 1.13
VCL-205ENST00000478896 PLEKHD1A6NEE1 506 aa22.05■■□□□ 1.12
VCL-205ENST00000478896 RAPGEF3O95398 923 aa22.05■■□□□ 1.12
VCL-205ENST00000478896 FRMPD1Q5SYB0 1578 aa22.04■■□□□ 1.12
VCL-205ENST00000478896 EHMT2Q96KQ7 1210 aa22.02■■□□□ 1.12
VCL-205ENST00000478896 CFAP74Q9C0B2 1584 aa22.02■■□□□ 1.12
VCL-205ENST00000478896 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.99■■□□□ 1.112e-6■■■■□ 23.9
VCL-205ENST00000478896 CDK13Q14004 1512 aaKnown RBP21.98■■□□□ 1.11
VCL-205ENST00000478896 UBTFP17480 764 aaKnown RBP21.98■■□□□ 1.11
VCL-205ENST00000478896 TTC37Q6PGP7 1564 aa21.98■■□□□ 1.11
VCL-205ENST00000478896 FANCAO15360 1455 aa21.97■■□□□ 1.11
VCL-205ENST00000478896 ADAMTSL3P82987 1691 aa21.97■■□□□ 1.11
VCL-205ENST00000478896 DENND4BO75064 1496 aaPredicted RBP21.96■■□□□ 1.11
VCL-205ENST00000478896 RICTORQ6R327 1708 aa21.96■■□□□ 1.11
VCL-205ENST00000478896 ARID4BQ4LE39 1312 aaPredicted RBP21.96■■□□□ 1.11
VCL-205ENST00000478896 ARHGEF40Q8TER5 1519 aa21.96■■□□□ 1.11
VCL-205ENST00000478896 BCORL1Q5H9F3 1711 aa21.95■■□□□ 1.1
VCL-205ENST00000478896 AKNAQ7Z591 1439 aa21.95■■□□□ 1.1
VCL-205ENST00000478896 HECW1Q76N89 1606 aa21.95■■□□□ 1.1
VCL-205ENST00000478896 PTPRMP28827 1452 aa21.92■■□□□ 1.1
VCL-205ENST00000478896 ATP1B4Q9UN42 357 aaPredicted RBP21.92■■□□□ 1.1
VCL-205ENST00000478896 FMN1Q68DA7 1419 aa21.91■■□□□ 1.1
VCL-205ENST00000478896 ILDR1Q86SU0 546 aaPredicted RBP21.91■■□□□ 1.1
VCL-205ENST00000478896 MADDQ8WXG6 1647 aa21.91■■□□□ 1.1
VCL-205ENST00000478896 ARHGAP35Q9NRY4 1499 aa21.88■■□□□ 1.09
VCL-205ENST00000478896 CHIC1Q5VXU3 224 aa21.87■■□□□ 1.09
VCL-205ENST00000478896 ZMYM4Q5VZL5 1548 aa21.86■■□□□ 1.09
VCL-205ENST00000478896 ZFYVE16Q7Z3T8 1539 aa21.85■■□□□ 1.09
VCL-205ENST00000478896 RIMS1Q86UR5 1692 aaKnown RBP21.85■■□□□ 1.09
VCL-205ENST00000478896 MYO5CQ9NQX4 1742 aa21.85■■□□□ 1.09
VCL-205ENST00000478896 PLCH2O75038 1416 aa21.82■■□□□ 1.08
VCL-205ENST00000478896 KIF14Q15058 1648 aa21.82■■□□□ 1.08
VCL-205ENST00000478896 CDK11AQ9UQ88 783 aaPredicted RBP21.82■■□□□ 1.08
VCL-205ENST00000478896 POGZQ7Z3K3 1410 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms