RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 RASEFQ8IZ41 740 aa14.3□□□□□ -0.12
VPS50-212ENST00000476413 HS6ST3Q8IZP7 471 aa14.26□□□□□ -0.13
VPS50-212ENST00000476413 FAM212AQ96EL1 285 aa14.26□□□□□ -0.13
VPS50-212ENST00000476413 VSIG10Q8N0Z9 540 aa14.25□□□□□ -0.13
VPS50-212ENST00000476413 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
VPS50-212ENST00000476413 POTEHQ6S545 545 aa14.24□□□□□ -0.13
VPS50-212ENST00000476413 SPRYD3Q8NCJ5 442 aa14.21□□□□□ -0.13
VPS50-212ENST00000476413 RIOK3O14730 519 aaKnown RBP14.2□□□□□ -0.14
VPS50-212ENST00000476413 CHRM1P11229 460 aaPredicted RBP14.2□□□□□ -0.14
VPS50-212ENST00000476413 DNAJC5Q9H3Z4 198 aa14.2□□□□□ -0.14
VPS50-212ENST00000476413 KDM2AQ9Y2K7 1162 aa14.19□□□□□ -0.14
VPS50-212ENST00000476413 CHADLQ6NUI6 762 aa14.17□□□□□ -0.14
VPS50-212ENST00000476413 NKX1-1Q15270 411 aaPredicted RBP14.12□□□□□ -0.15
VPS50-212ENST00000476413 TSHZ2Q9NRE2 1034 aa14.12□□□□□ -0.15
VPS50-212ENST00000476413 PYGBP11216 843 aa14.09□□□□□ -0.15
VPS50-212ENST00000476413 VGFO15240 615 aaPredicted RBP14.08□□□□□ -0.16
VPS50-212ENST00000476413 SGIP1Q9BQI5 828 aa14.07□□□□□ -0.16
VPS50-212ENST00000476413 TAOK2Q9UL54 1235 aa14.07□□□□□ -0.16
VPS50-212ENST00000476413 FARP1Q9Y4F1 1045 aaPredicted RBP14.07□□□□□ -0.16
VPS50-212ENST00000476413 STK25O00506 426 aa14.03□□□□□ -0.16
VPS50-212ENST00000476413 FXR2P51116 673 aaKnown RBP eCLIP14.03□□□□□ -0.16
VPS50-212ENST00000476413 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.01□□□□□ -0.17
VPS50-212ENST00000476413 PRKAR2AP13861 404 aaKnown RBP14.01□□□□□ -0.17
VPS50-212ENST00000476413 ZFP91Q96JP5 570 aaPredicted RBP14.01□□□□□ -0.17
VPS50-212ENST00000476413 GTPBP6O43824 516 aaPredicted RBP14□□□□□ -0.17
VPS50-212ENST00000476413 BCANQ96GW7 911 aa13.99□□□□□ -0.17
VPS50-212ENST00000476413 TSPYL2Q9H2G4 693 aaPredicted RBP13.99□□□□□ -0.17
VPS50-212ENST00000476413 BCL11BQ9C0K0 894 aaPredicted RBP13.97□□□□□ -0.17
VPS50-212ENST00000476413 CCDC61Q9Y6R9 512 aa13.94□□□□□ -0.18
VPS50-212ENST00000476413 STK24Q9Y6E0 443 aa13.93□□□□□ -0.18
VPS50-212ENST00000476413 CHRDL2Q6WN34 429 aa13.89□□□□□ -0.19
VPS50-212ENST00000476413 PIP4P2Q8N4L2 257 aa13.88□□□□□ -0.19
VPS50-212ENST00000476413 ZNF467Q7Z7K2 595 aaPredicted RBP13.87□□□□□ -0.19
VPS50-212ENST00000476413 PCDHB8Q9UN66 801 aa13.85□□□□□ -0.19
VPS50-212ENST00000476413 PCDHB13Q9Y5F0 798 aa13.85□□□□□ -0.19
VPS50-212ENST00000476413 PDAP1Q13442 181 aaKnown RBP13.81□□□□□ -0.2
VPS50-212ENST00000476413 ZNF579Q8NAF0 562 aaKnown RBP13.8□□□□□ -0.2
VPS50-212ENST00000476413 RYDENQ9NUL5 291 aaKnown RBP13.76□□□□□ -0.21
VPS50-212ENST00000476413 PSEN1P49768 467 aa13.74□□□□□ -0.21
VPS50-212ENST00000476413 IFNL1Q8IU54 200 aa13.74□□□□□ -0.21
VPS50-212ENST00000476413 KIF12Q96FN5 646 aa13.74□□□□□ -0.21
VPS50-212ENST00000476413 MAP3K13O43283 966 aa13.72□□□□□ -0.21
VPS50-212ENST00000476413 PAK3O75914 559 aaPredicted RBP13.72□□□□□ -0.21
VPS50-212ENST00000476413 PRKCSHP14314 528 aaPredicted RBP13.72□□□□□ -0.21
VPS50-212ENST00000476413 MFRPQ9BY79 579 aa13.68□□□□□ -0.22
VPS50-212ENST00000476413 CD44P16070 742 aaKnown RBP13.63□□□□□ -0.23
VPS50-212ENST00000476413 ZRANB1Q9UGI0 708 aa13.63□□□□□ -0.23
VPS50-212ENST00000476413 CADPS2Q86UW7 1296 aa13.62□□□□□ -0.23
VPS50-212ENST00000476413 PHF12Q96QT6 1004 aa13.61□□□□□ -0.23
VPS50-212ENST00000476413 EFCAB3Q8N7B9 438 aa13.59□□□□□ -0.23
VPS50-212ENST00000476413 TPRNQ4KMQ1 711 aa13.58□□□□□ -0.24
VPS50-212ENST00000476413 FBXO22Q8NEZ5 403 aa13.58□□□□□ -0.24
VPS50-212ENST00000476413 CABP2Q9NPB3 220 aa13.57□□□□□ -0.24
VPS50-212ENST00000476413 NBR1Q14596 966 aa13.56□□□□□ -0.24
VPS50-212ENST00000476413 PPP1R37O75864 691 aa13.54□□□□□ -0.24
VPS50-212ENST00000476413 C19orf67A6NJJ6 358 aa13.52□□□□□ -0.25
VPS50-212ENST00000476413 PHF8Q9UPP1 1060 aa13.52□□□□□ -0.25
VPS50-212ENST00000476413 SOX12O15370 315 aa13.51□□□□□ -0.25
VPS50-212ENST00000476413 TRPC6Q9Y210 931 aa13.5□□□□□ -0.25
VPS50-212ENST00000476413 NLRP6P59044 892 aa13.49□□□□□ -0.25
VPS50-212ENST00000476413 MS4A3Q96HJ5 214 aa13.47□□□□□ -0.25
VPS50-212ENST00000476413 MS4A4AQ96JQ5 239 aa13.44□□□□□ -0.26
VPS50-212ENST00000476413 KCNV2Q8TDN2 545 aa13.43□□□□□ -0.26
VPS50-212ENST00000476413 TMEM106CQ9BVX2 250 aa13.42□□□□□ -0.26
VPS50-212ENST00000476413 P3H3Q8IVL6 736 aa13.41□□□□□ -0.26
VPS50-212ENST00000476413 WDR70Q9NW82 654 aa13.38□□□□□ -0.27
VPS50-212ENST00000476413 NCKAP5LQ9HCH0 1330 aa13.34□□□□□ -0.27
VPS50-212ENST00000476413 TIE1P35590 1138 aa13.33□□□□□ -0.28
VPS50-212ENST00000476413 TTLL13PA6NNM8 815 aa13.32□□□□□ -0.28
VPS50-212ENST00000476413 ILDR1Q86SU0 546 aaPredicted RBP13.31□□□□□ -0.28
VPS50-212ENST00000476413 GOLGA2Q08379 1002 aa13.3□□□□□ -0.28
VPS50-212ENST00000476413 SP7Q8TDD2 431 aaPredicted RBP13.3□□□□□ -0.28
VPS50-212ENST00000476413 BMP2KQ9NSY1 1161 aaPredicted RBP13.29□□□□□ -0.28
VPS50-212ENST00000476413 GALR2O43603 387 aaPredicted RBP13.28□□□□□ -0.28
VPS50-212ENST00000476413 EVX2Q03828 476 aa13.28□□□□□ -0.28
VPS50-212ENST00000476413 MKRN3Q13064 507 aaKnown RBP13.27□□□□□ -0.29
VPS50-212ENST00000476413 CRISPLD2Q9H0B8 497 aa13.26□□□□□ -0.29
VPS50-212ENST00000476413 MFSD10Q14728 455 aa13.24□□□□□ -0.29
VPS50-212ENST00000476413 E2F4Q16254 413 aa13.24□□□□□ -0.29
VPS50-212ENST00000476413 HAX1O00165 279 aa13.23□□□□□ -0.29
VPS50-212ENST00000476413 ARHGEF1Q92888 912 aaKnown RBP13.23□□□□□ -0.29
VPS50-212ENST00000476413 LARP6Q9BRS8 491 aaKnown RBP13.21□□□□□ -0.29
VPS50-212ENST00000476413 TRIM35Q9UPQ4 493 aa13.21□□□□□ -0.29
VPS50-212ENST00000476413 PDE4AP27815 886 aa13.2□□□□□ -0.3
VPS50-212ENST00000476413 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.19□□□□□ -0.33e-10■■■■■ 39.1
VPS50-212ENST00000476413 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS50-212ENST00000476413 CLCN6P51797 869 aa13.14□□□□□ -0.31
VPS50-212ENST00000476413 DPY19L2Q6NUT2 758 aa13.14□□□□□ -0.31
VPS50-212ENST00000476413 LMOD2Q6P5Q4 547 aa13.14□□□□□ -0.31
VPS50-212ENST00000476413 DDX27Q96GQ7 796 aaKnown RBP13.14□□□□□ -0.31
VPS50-212ENST00000476413 ATN1P54259 1190 aaPredicted RBP13.13□□□□□ -0.31
VPS50-212ENST00000476413 CAMK2BQ13554 666 aa13.13□□□□□ -0.31
VPS50-212ENST00000476413 PDCD7Q8N8D1 485 aaKnown RBP13.12□□□□□ -0.31
VPS50-212ENST00000476413 SEMA3EO15041 775 aa13.11□□□□□ -0.31
VPS50-212ENST00000476413 ARIH1Q9Y4X5 557 aaPredicted RBP13.11□□□□□ -0.31
VPS50-212ENST00000476413 TESPA1A2RU30 521 aaPredicted RBP13.1□□□□□ -0.31
VPS50-212ENST00000476413 ATMINO43313 823 aaPredicted RBP13.1□□□□□ -0.31
VPS50-212ENST00000476413 ASTLQ6HA08 431 aaPredicted RBP13.09□□□□□ -0.31
VPS50-212ENST00000476413 IRX5P78411 483 aaPredicted RBP13.08□□□□□ -0.32
VPS50-212ENST00000476413 GPHNQ9NQX3 736 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms