RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 AEBP2Q6ZN18 517 aaPredicted RBP26.39■■□□□ 1.82
VPS50-212ENST00000476413 CHIC1Q5VXU3 224 aa26.27■■□□□ 1.8
VPS50-212ENST00000476413 PHF23Q9BUL5 403 aaPredicted RBP23.24■■□□□ 1.31
VPS50-212ENST00000476413 SENP3Q9H4L4 574 aaPredicted RBP22.16■■□□□ 1.14
VPS50-212ENST00000476413 PLPPR3Q6T4P5 718 aa21.53■■□□□ 1.04
VPS50-212ENST00000476413 FOXD1Q16676 465 aa20.59■□□□□ 0.89
VPS50-212ENST00000476413 PPP6R1Q9UPN7 881 aa20.3■□□□□ 0.84
VPS50-212ENST00000476413 ADRA2BP18089 450 aa20.27■□□□□ 0.84
VPS50-212ENST00000476413 PIAS4Q8N2W9 510 aaPredicted RBP19.48■□□□□ 0.71
VPS50-212ENST00000476413 KCNA4P22459 653 aa19.33■□□□□ 0.68
VPS50-212ENST00000476413 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
VPS50-212ENST00000476413 MSH5O43196 834 aa18.65■□□□□ 0.58
VPS50-212ENST00000476413 NCBP3Q53F19 620 aaKnown RBP18.64■□□□□ 0.57
VPS50-212ENST00000476413 EHMT2Q96KQ7 1210 aa18.59■□□□□ 0.57
VPS50-212ENST00000476413 NPM3O75607 178 aaKnown RBP18.5■□□□□ 0.55
VPS50-212ENST00000476413 SLC4A1APQ9BWU0 796 aaKnown RBP18.44■□□□□ 0.54
VPS50-212ENST00000476413 SCAF1Q9H7N4 1312 aaKnown RBP18.4■□□□□ 0.54
VPS50-212ENST00000476413 CNKSR2Q8WXI2 1034 aa18.38■□□□□ 0.53
VPS50-212ENST00000476413 MAPK8IP2Q13387 824 aaPredicted RBP18.24■□□□□ 0.51
VPS50-212ENST00000476413 POTEDQ86YR6 584 aa18.2■□□□□ 0.5
VPS50-212ENST00000476413 CSRNP3Q8WYN3 585 aa18.19■□□□□ 0.5
VPS50-212ENST00000476413 DNAJC5BQ9UF47 199 aa17.92■□□□□ 0.46
VPS50-212ENST00000476413 RNF216Q9NWF9 866 aaPredicted RBP17.9■□□□□ 0.46
VPS50-212ENST00000476413 ZBTB22O15209 634 aa17.87■□□□□ 0.45
VPS50-212ENST00000476413 DMRT2Q9Y5R5 561 aa17.83■□□□□ 0.44
VPS50-212ENST00000476413 HOXD11P31277 338 aaPredicted RBP17.72■□□□□ 0.43
VPS50-212ENST00000476413 FOXD4L1Q9NU39 408 aa17.57■□□□□ 0.4
VPS50-212ENST00000476413 SLC4A2P04920 1241 aa17.37■□□□□ 0.37
VPS50-212ENST00000476413 MYCNP04198 464 aaPredicted RBP17.02■□□□□ 0.32
VPS50-212ENST00000476413 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
VPS50-212ENST00000476413 ATXN8OSP0DMR3 200 aa16.89■□□□□ 0.29
VPS50-212ENST00000476413 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.77■□□□□ 0.28
VPS50-212ENST00000476413 U3KPZ7 1027 aaPredicted RBP16.68■□□□□ 0.26
VPS50-212ENST00000476413 ATF5Q9Y2D1 282 aaPredicted RBP16.63■□□□□ 0.25
VPS50-212ENST00000476413 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.52■□□□□ 0.24
VPS50-212ENST00000476413 HNRNPUL2Q1KMD3 747 aaKnown RBP16.52■□□□□ 0.24
VPS50-212ENST00000476413 SAMD1Q6SPF0 538 aaPredicted RBP16.52■□□□□ 0.24
VPS50-212ENST00000476413 FKBP8Q14318 412 aa16.33■□□□□ 0.2
VPS50-212ENST00000476413 ZNF219Q9P2Y4 722 aaPredicted RBP16.21■□□□□ 0.19
VPS50-212ENST00000476413 APLP2Q06481 763 aa16.17■□□□□ 0.18
VPS50-212ENST00000476413 RNF39Q9H2S5 420 aa16.12■□□□□ 0.17
VPS50-212ENST00000476413 SPINK5Q9NQ38 1064 aaPredicted RBP16.04■□□□□ 0.16
VPS50-212ENST00000476413 MKRN4PQ13434 485 aaPredicted RBP15.94■□□□□ 0.14
VPS50-212ENST00000476413 RTN4Q9NQC3 1192 aaKnown RBP15.94■□□□□ 0.14
VPS50-212ENST00000476413 TRHP20396 242 aaPredicted RBP15.92■□□□□ 0.14
VPS50-212ENST00000476413 CACNB1Q02641 598 aaPredicted RBP15.92■□□□□ 0.14
VPS50-212ENST00000476413 C1QBPQ07021 282 aaKnown RBP15.9■□□□□ 0.14
VPS50-212ENST00000476413 AMER1Q5JTC6 1135 aaPredicted RBP15.86■□□□□ 0.13
VPS50-212ENST00000476413 CAPN15O75808 1086 aa15.85■□□□□ 0.13
VPS50-212ENST00000476413 POLA2Q14181 598 aa15.83■□□□□ 0.12
VPS50-212ENST00000476413 SPDYE4A6NLX3 237 aa15.75■□□□□ 0.11
VPS50-212ENST00000476413 FBLN2P98095 1184 aa15.71■□□□□ 0.11
VPS50-212ENST00000476413 PROM2Q8N271 834 aa15.69■□□□□ 0.1
VPS50-212ENST00000476413 ABCB7O75027 752 aa15.64■□□□□ 0.09
VPS50-212ENST00000476413 ZBTB12Q9Y330 459 aaPredicted RBP15.54■□□□□ 0.08
VPS50-212ENST00000476413 DSG3P32926 999 aa15.53■□□□□ 0.08
VPS50-212ENST00000476413 FBXO3Q9UK99 471 aa15.52■□□□□ 0.08
VPS50-212ENST00000476413 VASPP50552 380 aaPredicted RBP15.37■□□□□ 0.05
VPS50-212ENST00000476413 OSCARQ8IYS5 282 aa15.29■□□□□ 0.04
VPS50-212ENST00000476413 SLC24A1O60721 1099 aa15.28■□□□□ 0.04
VPS50-212ENST00000476413 IFNLR1Q8IU57 520 aaPredicted RBP15.26■□□□□ 0.03
VPS50-212ENST00000476413 ZNF692Q9BU19 519 aaPredicted RBP15.23■□□□□ 0.03
VPS50-212ENST00000476413 SSUH2Q9Y2M2 353 aa15.23■□□□□ 0.03
VPS50-212ENST00000476413 SPDYE2BA6NHP3 402 aa15.22■□□□□ 0.03
VPS50-212ENST00000476413 SPDYE6P0CI01 402 aa15.22■□□□□ 0.03
VPS50-212ENST00000476413 SPDYE2Q495Y8 402 aa15.22■□□□□ 0.03
VPS50-212ENST00000476413 PABPN1Q86U42 306 aaKnown RBP eCLIP15.08■□□□□ 0
VPS50-212ENST00000476413 STAG3Q9UJ98 1225 aa15.01□□□□□ -0.01
VPS50-212ENST00000476413 PKD2Q13563 968 aa14.99□□□□□ -0.01
VPS50-212ENST00000476413 SPOCK2Q92563 424 aa14.89□□□□□ -0.03
VPS50-212ENST00000476413 KLHL34Q8N239 644 aa14.88□□□□□ -0.03
VPS50-212ENST00000476413 PLCD3Q8N3E9 789 aa14.85□□□□□ -0.03
VPS50-212ENST00000476413 MIER1Q8N108 512 aa14.83□□□□□ -0.04
VPS50-212ENST00000476413 DCAF8L2P0C7V8 631 aa14.7□□□□□ -0.06
VPS50-212ENST00000476413 PLCB2Q00722 1185 aa14.69□□□□□ -0.06
VPS50-212ENST00000476413 ECM2O94769 699 aaPredicted RBP14.68□□□□□ -0.06
VPS50-212ENST00000476413 RBM42Q9BTD8 480 aaKnown RBP14.68□□□□□ -0.06
VPS50-212ENST00000476413 AKT1S1Q96B36 256 aa14.67□□□□□ -0.06
VPS50-212ENST00000476413 ZBTB47Q9UFB7 747 aaPredicted RBP14.63□□□□□ -0.07
VPS50-212ENST00000476413 PLEKHG5O94827 1062 aa14.61□□□□□ -0.07
VPS50-212ENST00000476413 RGL2O15211 777 aa14.6□□□□□ -0.07
VPS50-212ENST00000476413 SPDYE1Q8NFV5 336 aaPredicted RBP14.6□□□□□ -0.07
VPS50-212ENST00000476413 NPM1P06748 294 aaKnown RBP eCLIP14.56□□□□□ -0.08
VPS50-212ENST00000476413 REM2Q8IYK8 340 aaPredicted RBP14.56□□□□□ -0.08
VPS50-212ENST00000476413 CIZ1Q9ULV3 898 aaPredicted RBP14.53□□□□□ -0.08
VPS50-212ENST00000476413 NUBP1P53384 320 aa14.5□□□□□ -0.09
VPS50-212ENST00000476413 CREBZFQ9NS37 354 aa14.5□□□□□ -0.09
VPS50-212ENST00000476413 CLEC11AQ9Y240 323 aa14.5□□□□□ -0.09
VPS50-212ENST00000476413 MNX1P50219 401 aaPredicted RBP14.48□□□□□ -0.09
VPS50-212ENST00000476413 BBXQ8WY36 941 aaPredicted RBP14.46□□□□□ -0.09
VPS50-212ENST00000476413 PRR29P0C7W0 189 aa14.45□□□□□ -0.1
VPS50-212ENST00000476413 HAP1P54257 671 aaPredicted RBP14.43□□□□□ -0.1
VPS50-212ENST00000476413 TRIM41Q8WV44 630 aa14.42□□□□□ -0.1
VPS50-212ENST00000476413 PITPNM1O00562 1244 aa14.4□□□□□ -0.1
VPS50-212ENST00000476413 GSE1Q14687 1217 aa14.39□□□□□ -0.11
VPS50-212ENST00000476413 RNF25Q96BH1 459 aaPredicted RBP14.38□□□□□ -0.11
VPS50-212ENST00000476413 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.35□□□□□ -0.11
VPS50-212ENST00000476413 CHGAP10645 457 aaKnown RBP14.31□□□□□ -0.12
VPS50-212ENST00000476413 PAXIP1Q6ZW49 1069 aaPredicted RBP14.31□□□□□ -0.12
VPS50-212ENST00000476413 DCAF8Q5TAQ9 597 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms