RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 MTUS2Q5JR59 1369 aa19.87■□□□□ 0.77
CCDC88A-211ENST00000471947 TOP2BQ02880 1626 aa19.86■□□□□ 0.77
CCDC88A-211ENST00000471947 CHMP7Q8WUX9 453 aaPredicted RBP19.85■□□□□ 0.77
CCDC88A-211ENST00000471947 ZNF326Q5BKZ1 582 aaKnown RBP19.84■□□□□ 0.77
CCDC88A-211ENST00000471947 CCNB3Q8WWL7 1395 aa19.83■□□□□ 0.76
CCDC88A-211ENST00000471947 PRXQ9BXM0 1461 aa19.81■□□□□ 0.76
CCDC88A-211ENST00000471947 DDX10Q13206 875 aaKnown RBP19.81■□□□□ 0.76
CCDC88A-211ENST00000471947 HMGXB3Q12766 1538 aa19.8■□□□□ 0.76
CCDC88A-211ENST00000471947 ACIN1Q9UKV3 1341 aaKnown RBP19.78■□□□□ 0.76
CCDC88A-211ENST00000471947 ARHGAP35Q9NRY4 1499 aa19.76■□□□□ 0.75
CCDC88A-211ENST00000471947 AQRO60306 1485 aaKnown RBP eCLIP19.76■□□□□ 0.75
CCDC88A-211ENST00000471947 FOXD1Q16676 465 aa19.76■□□□□ 0.75
CCDC88A-211ENST00000471947 ERCC6Q03468 1493 aa19.71■□□□□ 0.75
CCDC88A-211ENST00000471947 PDS5BQ9NTI5 1447 aa19.7■□□□□ 0.74
CCDC88A-211ENST00000471947 MYT1LQ9UL68 1186 aa19.7■□□□□ 0.74
CCDC88A-211ENST00000471947 POLA1P09884 1462 aaPredicted RBP19.7■□□□□ 0.74
CCDC88A-211ENST00000471947 RAB3GAP2Q9H2M9 1393 aa19.69■□□□□ 0.74
CCDC88A-211ENST00000471947 SENP3-EIF4A1A0A087X0R7 540 aa19.68■□□□□ 0.74
CCDC88A-211ENST00000471947 PHLDB1Q86UU1 1377 aa19.67■□□□□ 0.74
CCDC88A-211ENST00000471947 TOPBP1Q92547 1522 aa19.65■□□□□ 0.74
CCDC88A-211ENST00000471947 BCANQ96GW7 911 aa19.65■□□□□ 0.74
CCDC88A-211ENST00000471947 DHX57Q6P158 1386 aaKnown RBP19.64■□□□□ 0.74
CCDC88A-211ENST00000471947 KCNH8Q96L42 1107 aa19.61■□□□□ 0.73
CCDC88A-211ENST00000471947 GAPVD1Q14C86 1478 aa19.58■□□□□ 0.73
CCDC88A-211ENST00000471947 FHAD1B1AJZ9 1412 aa19.56■□□□□ 0.72
CCDC88A-211ENST00000471947 TONSLQ96HA7 1378 aa19.54■□□□□ 0.72
CCDC88A-211ENST00000471947 ZNF644Q9H582 1327 aaPredicted RBP19.54■□□□□ 0.72
CCDC88A-211ENST00000471947 URB2Q14146 1524 aaKnown RBP19.53■□□□□ 0.72
CCDC88A-211ENST00000471947 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.52■□□□□ 0.715e-9■□□□□ 9.4
CCDC88A-211ENST00000471947 BIVM-ERCC5R4GMW8 1640 aa19.51■□□□□ 0.71
CCDC88A-211ENST00000471947 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
CCDC88A-211ENST00000471947 SENP3Q9H4L4 574 aaPredicted RBP19.49■□□□□ 0.71
CCDC88A-211ENST00000471947 SETD5Q9C0A6 1442 aa19.49■□□□□ 0.71
CCDC88A-211ENST00000471947 KDM2AQ9Y2K7 1162 aa19.48■□□□□ 0.71
CCDC88A-211ENST00000471947 CFDP1Q9UEE9 299 aaPredicted RBP19.47■□□□□ 0.71
CCDC88A-211ENST00000471947 CDK11AQ9UQ88 783 aaPredicted RBP19.47■□□□□ 0.71
CCDC88A-211ENST00000471947 SLC4A1APQ9BWU0 796 aaKnown RBP19.45■□□□□ 0.7
CCDC88A-211ENST00000471947 LRRC9Q6ZRR7 1453 aa19.43■□□□□ 0.7
CCDC88A-211ENST00000471947 ZNF608Q9ULD9 1512 aaPredicted RBP19.41■□□□□ 0.7
CCDC88A-211ENST00000471947 JPH4Q96JJ6 628 aa19.4■□□□□ 0.7
CCDC88A-211ENST00000471947 FMN1Q68DA7 1419 aa19.39■□□□□ 0.69
CCDC88A-211ENST00000471947 DNMBPQ6XZF7 1577 aa19.39■□□□□ 0.69
CCDC88A-211ENST00000471947 ANP32CO43423 234 aa19.38■□□□□ 0.69
CCDC88A-211ENST00000471947 PLEKHD1A6NEE1 506 aa19.37■□□□□ 0.69
CCDC88A-211ENST00000471947 RGL3Q3MIN7 710 aa19.35■□□□□ 0.69
CCDC88A-211ENST00000471947 ABCA10Q8WWZ4 1543 aa19.35■□□□□ 0.69
CCDC88A-211ENST00000471947 RRBP1Q9P2E9 1410 aaKnown RBP19.32■□□□□ 0.68
CCDC88A-211ENST00000471947 PCF11O94913 1555 aaKnown RBP19.31■□□□□ 0.68
CCDC88A-211ENST00000471947 HNRNPMP52272 730 aaKnown RBP eCLIP19.29■□□□□ 0.68
CCDC88A-211ENST00000471947 IRX6P78412 446 aaPredicted RBP19.29■□□□□ 0.68
CCDC88A-211ENST00000471947 FAM9BQ8IZU0 186 aa19.28■□□□□ 0.68
CCDC88A-211ENST00000471947 PPP1R15AO75807 674 aaPredicted RBP19.27■□□□□ 0.68
CCDC88A-211ENST00000471947 TIAM1Q13009 1591 aa19.27■□□□□ 0.68
CCDC88A-211ENST00000471947 TSPY4P0CV99 314 aa19.27■□□□□ 0.67
CCDC88A-211ENST00000471947 TSPY10P0CW01 314 aa19.27■□□□□ 0.67
CCDC88A-211ENST00000471947 MPHOSPH9Q99550 1183 aa19.26■□□□□ 0.67
CCDC88A-211ENST00000471947 FGD6Q6ZV73 1430 aa19.26■□□□□ 0.67
CCDC88A-211ENST00000471947 CDK13Q14004 1512 aaKnown RBP19.25■□□□□ 0.67
CCDC88A-211ENST00000471947 CASKIN1Q8WXD9 1431 aa19.24■□□□□ 0.67
CCDC88A-211ENST00000471947 SALL2Q9Y467 1007 aaPredicted RBP19.23■□□□□ 0.67
CCDC88A-211ENST00000471947 L3MBTL2Q969R5 705 aa19.23■□□□□ 0.67
CCDC88A-211ENST00000471947 CLSPNQ9HAW4 1339 aa19.23■□□□□ 0.67
CCDC88A-211ENST00000471947 NCOA2Q15596 1464 aa19.22■□□□□ 0.67
CCDC88A-211ENST00000471947 HNRNPUQ00839 825 aaKnown RBP eCLIP19.21■□□□□ 0.67
CCDC88A-211ENST00000471947 NEFLP07196 543 aa19.21■□□□□ 0.67
CCDC88A-211ENST00000471947 SNAPC4Q5SXM2 1469 aa19.2■□□□□ 0.66
CCDC88A-211ENST00000471947 LAMC3Q9Y6N6 1575 aa19.19■□□□□ 0.66
CCDC88A-211ENST00000471947 FKBP8Q14318 412 aa19.19■□□□□ 0.66
CCDC88A-211ENST00000471947 MRC2Q9UBG0 1479 aa19.19■□□□□ 0.66
CCDC88A-211ENST00000471947 HSPA5P11021 654 aaKnown RBP19.18■□□□□ 0.66
CCDC88A-211ENST00000471947 PKD2Q13563 968 aa19.18■□□□□ 0.66
CCDC88A-211ENST00000471947 PTPRKQ15262 1439 aa19.17■□□□□ 0.66
CCDC88A-211ENST00000471947 PRG4Q92954 1404 aaPredicted RBP19.16■□□□□ 0.66
CCDC88A-211ENST00000471947 KIF21AQ7Z4S6 1674 aa19.16■□□□□ 0.66
CCDC88A-211ENST00000471947 GRIN2BQ13224 1484 aa19.16■□□□□ 0.66
CCDC88A-211ENST00000471947 CCDC18Q5T9S5 1454 aa19.16■□□□□ 0.66
CCDC88A-211ENST00000471947 PRDM2Q13029 1718 aa19.15■□□□□ 0.66
CCDC88A-211ENST00000471947 EIF4G2P78344 907 aaKnown RBP eCLIP19.15■□□□□ 0.66
CCDC88A-211ENST00000471947 MYOM3Q5VTT5 1437 aa19.13■□□□□ 0.65
CCDC88A-211ENST00000471947 FYCO1Q9BQS8 1478 aa19.11■□□□□ 0.65
CCDC88A-211ENST00000471947 CHGAP10645 457 aaKnown RBP19.11■□□□□ 0.65
CCDC88A-211ENST00000471947 PLB1Q6P1J6 1458 aa19.09■□□□□ 0.65
CCDC88A-211ENST00000471947 DCAF11Q8TEB1 546 aa19.08■□□□□ 0.64
CCDC88A-211ENST00000471947 WDR97A6NE52 1622 aa19.06■□□□□ 0.64
CCDC88A-211ENST00000471947 MRS2Q9HD23 443 aa19.05■□□□□ 0.64
CCDC88A-211ENST00000471947 CARMIL2Q6F5E8 1435 aa19.03■□□□□ 0.64
CCDC88A-211ENST00000471947 NUP155O75694 1391 aa19.03■□□□□ 0.64
CCDC88A-211ENST00000471947 PELP1Q8IZL8 1130 aaKnown RBP19.01■□□□□ 0.63
CCDC88A-211ENST00000471947 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
CCDC88A-211ENST00000471947 EPRSP07814 1512 aaKnown RBP19.01■□□□□ 0.63
CCDC88A-211ENST00000471947 PTPRGP23470 1445 aa19■□□□□ 0.63
CCDC88A-211ENST00000471947 IFT140Q96RY7 1462 aa18.99■□□□□ 0.63
CCDC88A-211ENST00000471947 CARD11Q9BXL7 1154 aa18.99■□□□□ 0.63
CCDC88A-211ENST00000471947 NAIPQ13075 1403 aa18.99■□□□□ 0.63
CCDC88A-211ENST00000471947 NBPF8Q3BBV2 869 aa18.99■□□□□ 0.63
CCDC88A-211ENST00000471947 EFCAB5A4FU69 1503 aa18.98■□□□□ 0.63
CCDC88A-211ENST00000471947 MAPKBP1O60336 1514 aa18.97■□□□□ 0.63
CCDC88A-211ENST00000471947 IQGAP2Q13576 1575 aa18.96■□□□□ 0.63
CCDC88A-211ENST00000471947 SUPT16HQ9Y5B9 1047 aaKnown RBP18.95■□□□□ 0.62
CCDC88A-211ENST00000471947 THOC2Q8NI27 1593 aaKnown RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms