RNA–Protein interactions for RNA: ENST00000469300.6

LIMS2-213, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 4,807 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-213ENST00000469300 TOP2AP11388 1531 aaKnown RBP20.49■□□□□ 0.87
LIMS2-213ENST00000469300 PLPPR3Q6T4P5 718 aa20.49■□□□□ 0.87
LIMS2-213ENST00000469300 CADPSQ9ULU8 1353 aa20.49■□□□□ 0.87
LIMS2-213ENST00000469300 SOGA1O94964 1423 aa20.45■□□□□ 0.86
LIMS2-213ENST00000469300 KDM2AQ9Y2K7 1162 aa20.44■□□□□ 0.86
LIMS2-213ENST00000469300 ATAD2BQ9ULI0 1458 aa20.42■□□□□ 0.86
LIMS2-213ENST00000469300 CARMIL2Q6F5E8 1435 aa20.42■□□□□ 0.86
LIMS2-213ENST00000469300 CCNB3Q8WWL7 1395 aa20.4■□□□□ 0.86
LIMS2-213ENST00000469300 EIF4G2P78344 907 aaKnown RBP eCLIP20.4■□□□□ 0.86
LIMS2-213ENST00000469300 DDX10Q13206 875 aaKnown RBP20.4■□□□□ 0.86
LIMS2-213ENST00000469300 PPP1R15AO75807 674 aaPredicted RBP20.39■□□□□ 0.85
LIMS2-213ENST00000469300 EIF4G1Q04637 1599 aaKnown RBP20.37■□□□□ 0.85
LIMS2-213ENST00000469300 TMC1Q8TDI8 760 aa20.35■□□□□ 0.85
LIMS2-213ENST00000469300 SCAF1Q9H7N4 1312 aaKnown RBP20.34■□□□□ 0.85
LIMS2-213ENST00000469300 ARID4BQ4LE39 1312 aaPredicted RBP20.32■□□□□ 0.84
LIMS2-213ENST00000469300 TDRD9Q8NDG6 1382 aaKnown RBP20.32■□□□□ 0.84
LIMS2-213ENST00000469300 CDCA8Q53HL2 280 aa20.31■□□□□ 0.84
LIMS2-213ENST00000469300 SMARCA4P51532 1647 aa20.3■□□□□ 0.84
LIMS2-213ENST00000469300 WIZO95785 1651 aa20.29■□□□□ 0.84
LIMS2-213ENST00000469300 WDR43Q15061 677 aaKnown RBP eCLIP20.27■□□□□ 0.84
LIMS2-213ENST00000469300 FMN1Q68DA7 1419 aa20.27■□□□□ 0.83
LIMS2-213ENST00000469300 HNRNPUQ00839 825 aaKnown RBP eCLIP20.26■□□□□ 0.83
LIMS2-213ENST00000469300 ABCC8Q09428 1581 aa20.26■□□□□ 0.83
LIMS2-213ENST00000469300 VPS8Q8N3P4 1428 aa20.26■□□□□ 0.83
LIMS2-213ENST00000469300 MIER1Q8N108 512 aa20.25■□□□□ 0.83
LIMS2-213ENST00000469300 FAM9BQ8IZU0 186 aa20.24■□□□□ 0.83
LIMS2-213ENST00000469300 RGL3Q3MIN7 710 aa20.23■□□□□ 0.83
LIMS2-213ENST00000469300 KANK1Q14678 1352 aa20.21■□□□□ 0.83
LIMS2-213ENST00000469300 MRS2Q9HD23 443 aa20.2■□□□□ 0.82
LIMS2-213ENST00000469300 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.19■□□□□ 0.82
LIMS2-213ENST00000469300 HIRIP3Q9BW71 556 aaPredicted RBP20.19■□□□□ 0.82
LIMS2-213ENST00000469300 EIF5BO60841 1220 aaKnown RBP20.17■□□□□ 0.82
LIMS2-213ENST00000469300 RAPGEF2Q9Y4G8 1499 aa20.17■□□□□ 0.82
LIMS2-213ENST00000469300 TIMELESSQ9UNS1 1208 aa20.16■□□□□ 0.82
LIMS2-213ENST00000469300 GLIPR1L2Q4G1C9 344 aa20.15■□□□□ 0.82
LIMS2-213ENST00000469300 ARHGAP35Q9NRY4 1499 aa20.14■□□□□ 0.82
LIMS2-213ENST00000469300 C14orf37Q86TY3 774 aa20.14■□□□□ 0.82
LIMS2-213ENST00000469300 EFCAB2Q5VUJ9 269 aa20.14■□□□□ 0.81
LIMS2-213ENST00000469300 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
LIMS2-213ENST00000469300 HDGFP51858 240 aaKnown RBP20.13■□□□□ 0.81
LIMS2-213ENST00000469300 CARD11Q9BXL7 1154 aa20.13■□□□□ 0.81
LIMS2-213ENST00000469300 CFAP53Q96M91 514 aa20.09■□□□□ 0.81
LIMS2-213ENST00000469300 TRHP20396 242 aaPredicted RBP20.08■□□□□ 0.81
LIMS2-213ENST00000469300 BCL11AQ9H165 835 aa20.08■□□□□ 0.8
LIMS2-213ENST00000469300 NCAPD3P42695 1498 aa20.07■□□□□ 0.8
LIMS2-213ENST00000469300 FKBP8Q14318 412 aa20.06■□□□□ 0.8
LIMS2-213ENST00000469300 KNSTRNQ9Y448 316 aa20.06■□□□□ 0.8
LIMS2-213ENST00000469300 RSPH4AQ5TD94 716 aa20.05■□□□□ 0.8
LIMS2-213ENST00000469300 JPH4Q96JJ6 628 aa20.05■□□□□ 0.8
LIMS2-213ENST00000469300 SALL2Q9Y467 1007 aaPredicted RBP20.04■□□□□ 0.8
LIMS2-213ENST00000469300 POGKQ9P215 609 aa20.03■□□□□ 0.8
LIMS2-213ENST00000469300 ANP32AP39687 249 aaKnown RBP20.02■□□□□ 0.8
LIMS2-213ENST00000469300 SETD5Q9C0A6 1442 aa20.01■□□□□ 0.79
LIMS2-213ENST00000469300 NPM2Q86SE8 214 aaKnown RBP19.99■□□□□ 0.79
LIMS2-213ENST00000469300 UPF2Q9HAU5 1272 aaKnown RBP19.99■□□□□ 0.79
LIMS2-213ENST00000469300 ANKRD30AQ9BXX3 1397 aa19.98■□□□□ 0.79
LIMS2-213ENST00000469300 SIN3AQ96ST3 1273 aa19.95■□□□□ 0.78
LIMS2-213ENST00000469300 CCDC18Q5T9S5 1454 aa19.95■□□□□ 0.78
LIMS2-213ENST00000469300 KANK4Q5T7N3 995 aaPredicted RBP19.95■□□□□ 0.78
LIMS2-213ENST00000469300 HAP1P54257 671 aaPredicted RBP19.92■□□□□ 0.78
LIMS2-213ENST00000469300 DCAF11Q8TEB1 546 aa19.92■□□□□ 0.78
LIMS2-213ENST00000469300 SENP3Q9H4L4 574 aaPredicted RBP19.92■□□□□ 0.78
LIMS2-213ENST00000469300 GGT6Q6P531 493 aa19.92■□□□□ 0.78
LIMS2-213ENST00000469300 CCDC136Q96JN2 1154 aa19.92■□□□□ 0.78
LIMS2-213ENST00000469300 NUDCQ9Y266 331 aa19.92■□□□□ 0.78
LIMS2-213ENST00000469300 TMF1P82094 1093 aa19.91■□□□□ 0.78
LIMS2-213ENST00000469300 FHOD3Q2V2M9 1422 aa19.91■□□□□ 0.78
LIMS2-213ENST00000469300 PKD2Q13563 968 aa19.89■□□□□ 0.78
LIMS2-213ENST00000469300 MLECQ14165 292 aa19.89■□□□□ 0.77
LIMS2-213ENST00000469300 MYH16Q9H6N6 1097 aa19.88■□□□□ 0.77
LIMS2-213ENST00000469300 ZBTB7CA1YPR0 619 aa19.88■□□□□ 0.77
LIMS2-213ENST00000469300 PTPRGP23470 1445 aa19.86■□□□□ 0.77
LIMS2-213ENST00000469300 GAPVD1Q14C86 1478 aa19.85■□□□□ 0.77
LIMS2-213ENST00000469300 OSCARQ8IYS5 282 aa19.85■□□□□ 0.77
LIMS2-213ENST00000469300 IRX6P78412 446 aaPredicted RBP19.85■□□□□ 0.77
LIMS2-213ENST00000469300 NUP155O75694 1391 aa19.85■□□□□ 0.77
LIMS2-213ENST00000469300 FGD5Q6ZNL6 1462 aa19.84■□□□□ 0.77
LIMS2-213ENST00000469300 SPAG9O60271 1321 aaKnown RBP19.84■□□□□ 0.77
LIMS2-213ENST00000469300 PNNQ9H307 717 aaKnown RBP19.81■□□□□ 0.76
LIMS2-213ENST00000469300 MAPK8IP3Q9UPT6 1336 aa19.81■□□□□ 0.76
LIMS2-213ENST00000469300 HSP90AA1P07900 732 aaKnown RBP19.81■□□□□ 0.76
LIMS2-213ENST00000469300 SENP3-EIF4A1A0A087X0R7 540 aa19.8■□□□□ 0.76
LIMS2-213ENST00000469300 MPHOSPH9Q99550 1183 aa19.8■□□□□ 0.76
LIMS2-213ENST00000469300 PPM1GO15355 546 aaPredicted RBP19.79■□□□□ 0.76
LIMS2-213ENST00000469300 IGF1RP08069 1367 aa19.79■□□□□ 0.76
LIMS2-213ENST00000469300 A0A0G2JS52 829 aa19.78■□□□□ 0.76
LIMS2-213ENST00000469300 KIF3BO15066 747 aa19.78■□□□□ 0.76
LIMS2-213ENST00000469300 RAB3GAP2Q9H2M9 1393 aa19.76■□□□□ 0.75
LIMS2-213ENST00000469300 PLEKHG5O94827 1062 aa19.76■□□□□ 0.75
LIMS2-213ENST00000469300 HNRNPMP52272 730 aaKnown RBP eCLIP19.74■□□□□ 0.75
LIMS2-213ENST00000469300 ANP32EQ9BTT0 268 aa19.74■□□□□ 0.75
LIMS2-213ENST00000469300 LMOD2Q6P5Q4 547 aa19.74■□□□□ 0.75
LIMS2-213ENST00000469300 SRPK2P78362 688 aaKnown RBP19.73■□□□□ 0.75
LIMS2-213ENST00000469300 CFTRP13569 1480 aa19.7■□□□□ 0.74
LIMS2-213ENST00000469300 RUSC2Q8N2Y8 1516 aa19.69■□□□□ 0.74
LIMS2-213ENST00000469300 WASHC2CQ9Y4E1 1318 aa19.68■□□□□ 0.74
LIMS2-213ENST00000469300 RAD54L2Q9Y4B4 1467 aa19.68■□□□□ 0.74
LIMS2-213ENST00000469300 CHMP4BQ9H444 224 aaKnown RBP19.68■□□□□ 0.74
LIMS2-213ENST00000469300 HDGFL2Q7Z4V5 671 aaPredicted RBP19.67■□□□□ 0.74
LIMS2-213ENST00000469300 HMGXB3Q12766 1538 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms