RNA–Protein interactions for RNA: ENST00000469300.6

LIMS2-213, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 4,807 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-213ENST00000469300 NISCHQ9Y2I1 1504 aa26.87■■□□□ 1.89
LIMS2-213ENST00000469300 DCAF8L2P0C7V8 631 aa26.74■■□□□ 1.87
LIMS2-213ENST00000469300 SUPT5HO00267 1087 aaKnown RBP25.12■■□□□ 1.61
LIMS2-213ENST00000469300 SHROOM4Q9ULL8 1493 aa24.88■■□□□ 1.57
LIMS2-213ENST00000469300 APLP2Q06481 763 aa23.86■■□□□ 1.41
LIMS2-213ENST00000469300 FAM9AQ8IZU1 332 aaPredicted RBP23.85■■□□□ 1.41
LIMS2-213ENST00000469300 EHMT2Q96KQ7 1210 aa23.79■■□□□ 1.4
LIMS2-213ENST00000469300 TRIM41Q8WV44 630 aa23.51■■□□□ 1.35
LIMS2-213ENST00000469300 PELP1Q8IZL8 1130 aaKnown RBP23.2■■□□□ 1.3
LIMS2-213ENST00000469300 UBTFP17480 764 aaKnown RBP23.13■■□□□ 1.29
LIMS2-213ENST00000469300 PCGF6Q9BYE7 350 aa23.11■■□□□ 1.29
LIMS2-213ENST00000469300 MYT1Q01538 1121 aa23.09■■□□□ 1.29
LIMS2-213ENST00000469300 ABCC9O60706 1549 aa23.08■■□□□ 1.29
LIMS2-213ENST00000469300 RANGAP1P46060 587 aaPredicted RBP23.04■■□□□ 1.28
LIMS2-213ENST00000469300 ATP1B4Q9UN42 357 aaPredicted RBP22.98■■□□□ 1.27
LIMS2-213ENST00000469300 TTBK1Q5TCY1 1321 aaPredicted RBP22.94■■□□□ 1.26
LIMS2-213ENST00000469300 ZEB1P37275 1124 aaPredicted RBP22.79■■□□□ 1.24
LIMS2-213ENST00000469300 PABPN1Q86U42 306 aaKnown RBP eCLIP22.69■■□□□ 1.22
LIMS2-213ENST00000469300 CCER1Q8TC90 406 aaPredicted RBP22.64■■□□□ 1.22
LIMS2-213ENST00000469300 CHIC1Q5VXU3 224 aa22.55■■□□□ 1.2
LIMS2-213ENST00000469300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.4■■□□□ 1.18
LIMS2-213ENST00000469300 HNRNPUL2Q1KMD3 747 aaKnown RBP22.4■■□□□ 1.18
LIMS2-213ENST00000469300 PPARGC1BQ86YN6 1023 aaKnown RBP22.4■■□□□ 1.18
LIMS2-213ENST00000469300 LOC105371045A0A1W2PR82 267 aa22.38■■□□□ 1.17
LIMS2-213ENST00000469300 CCDC180Q9P1Z9 1646 aa22.34■■□□□ 1.17
LIMS2-213ENST00000469300 CENPBP07199 599 aaPredicted RBP22.34■■□□□ 1.17
LIMS2-213ENST00000469300 TRIM26Q12899 539 aaPredicted RBP22.33■■□□□ 1.17
LIMS2-213ENST00000469300 ZCCHC6Q5VYS8 1495 aaKnown RBP22.24■■□□□ 1.15
LIMS2-213ENST00000469300 MYT1LQ9UL68 1186 aa22.2■■□□□ 1.15
LIMS2-213ENST00000469300 ERICH6Q7L0X2 663 aa22.14■■□□□ 1.13
LIMS2-213ENST00000469300 HRCP23327 699 aa22.1■■□□□ 1.13
LIMS2-213ENST00000469300 SCRIBQ14160 1630 aa22.08■■□□□ 1.13
LIMS2-213ENST00000469300 ITGAEP38570 1179 aa22.08■■□□□ 1.12
LIMS2-213ENST00000469300 RB1CC1Q8TDY2 1594 aa21.89■■□□□ 1.1
LIMS2-213ENST00000469300 NEFLP07196 543 aa21.83■■□□□ 1.09
LIMS2-213ENST00000469300 FBLN2P98095 1184 aa21.83■■□□□ 1.08
LIMS2-213ENST00000469300 CSRNP3Q8WYN3 585 aa21.81■■□□□ 1.08
LIMS2-213ENST00000469300 YTHDC1Q96MU7 727 aaKnown RBP21.79■■□□□ 1.08
LIMS2-213ENST00000469300 FAM50AQ14320 339 aaKnown RBP21.76■■□□□ 1.07
LIMS2-213ENST00000469300 NACADO15069 1562 aa21.75■■□□□ 1.07
LIMS2-213ENST00000469300 POLR3GLQ9BT43 218 aa21.63■■□□□ 1.05
LIMS2-213ENST00000469300 TRIM52Q96A61 297 aa21.59■■□□□ 1.05
LIMS2-213ENST00000469300 CDK11AQ9UQ88 783 aaPredicted RBP21.58■■□□□ 1.05
LIMS2-213ENST00000469300 DCAF1Q9Y4B6 1507 aa21.47■■□□□ 1.03
LIMS2-213ENST00000469300 P3H3Q8IVL6 736 aa21.45■■□□□ 1.02
LIMS2-213ENST00000469300 SLC4A1APQ9BWU0 796 aaKnown RBP21.35■■□□□ 1.01
LIMS2-213ENST00000469300 RSF1Q96T23 1441 aaPredicted RBP21.34■■□□□ 1.01
LIMS2-213ENST00000469300 NPM1P06748 294 aaKnown RBP eCLIP21.32■■□□□ 1
LIMS2-213ENST00000469300 NEUROD1Q13562 356 aa21.3■■□□□ 1
LIMS2-213ENST00000469300 BAZ1BQ9UIG0 1483 aaKnown RBP21.28■■□□□ 1
LIMS2-213ENST00000469300 ARID3CA6NKF2 412 aa21.26■□□□□ 0.99
LIMS2-213ENST00000469300 EEA1Q15075 1411 aa21.22■□□□□ 0.99
LIMS2-213ENST00000469300 ZNF777Q9ULD5 760 aaPredicted RBP21.22■□□□□ 0.99
LIMS2-213ENST00000469300 CHMP7Q8WUX9 453 aaPredicted RBP21.21■□□□□ 0.99
LIMS2-213ENST00000469300 BAZ1AQ9NRL2 1556 aaPredicted RBP21.2■□□□□ 0.98
LIMS2-213ENST00000469300 CNGB1Q14028 1251 aaPredicted RBP21.2■□□□□ 0.98
LIMS2-213ENST00000469300 DIEXFQ68CQ4 756 aaKnown RBP21.18■□□□□ 0.98
LIMS2-213ENST00000469300 ZNF326Q5BKZ1 582 aaKnown RBP21.15■□□□□ 0.98
LIMS2-213ENST00000469300 ESF1Q9H501 851 aaKnown RBP21.11■□□□□ 0.97
LIMS2-213ENST00000469300 WRNQ14191 1432 aaPredicted RBP eCLIP21.09■□□□□ 0.97
LIMS2-213ENST00000469300 ANP32CO43423 234 aa21.04■□□□□ 0.96
LIMS2-213ENST00000469300 MYO15BQ96JP2 1530 aa21.01■□□□□ 0.95
LIMS2-213ENST00000469300 DAXXQ9UER7 740 aaPredicted RBP21.01■□□□□ 0.95
LIMS2-213ENST00000469300 KIF27Q86VH2 1401 aa21■□□□□ 0.95
LIMS2-213ENST00000469300 MTUS2Q5JR59 1369 aa21■□□□□ 0.95
LIMS2-213ENST00000469300 CLIP1P30622 1438 aa20.99■□□□□ 0.95
LIMS2-213ENST00000469300 BCANQ96GW7 911 aa20.99■□□□□ 0.95
LIMS2-213ENST00000469300 TSPY4P0CV99 314 aa20.97■□□□□ 0.95
LIMS2-213ENST00000469300 TSPY10P0CW01 314 aa20.97■□□□□ 0.95
LIMS2-213ENST00000469300 GOLGA3Q08378 1498 aa20.95■□□□□ 0.94
LIMS2-213ENST00000469300 ZNF316A6NFI3 1004 aaPredicted RBP20.94■□□□□ 0.94
LIMS2-213ENST00000469300 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
LIMS2-213ENST00000469300 ERCC6Q03468 1493 aa20.9■□□□□ 0.94
LIMS2-213ENST00000469300 ACIN1Q9UKV3 1341 aaKnown RBP20.9■□□□□ 0.94
LIMS2-213ENST00000469300 TONSLQ96HA7 1378 aa20.89■□□□□ 0.93
LIMS2-213ENST00000469300 STAG3Q9UJ98 1225 aa20.87■□□□□ 0.93
LIMS2-213ENST00000469300 NEFMP07197 916 aa20.86■□□□□ 0.93
LIMS2-213ENST00000469300 PLEKHD1A6NEE1 506 aa20.85■□□□□ 0.93
LIMS2-213ENST00000469300 GTF3C3Q9Y5Q9 886 aa20.84■□□□□ 0.93
LIMS2-213ENST00000469300 CEP164Q9UPV0 1460 aa20.83■□□□□ 0.92
LIMS2-213ENST00000469300 SMARCA2P51531 1590 aa20.83■□□□□ 0.92
LIMS2-213ENST00000469300 RTL5Q5HYW3 569 aaPredicted RBP20.82■□□□□ 0.92
LIMS2-213ENST00000469300 CHGAP10645 457 aaKnown RBP20.79■□□□□ 0.92
LIMS2-213ENST00000469300 TNIKQ9UKE5 1360 aa20.77■□□□□ 0.92
LIMS2-213ENST00000469300 CHIC2Q9UKJ5 165 aa20.77■□□□□ 0.92
LIMS2-213ENST00000469300 CLSPNQ9HAW4 1339 aa20.76■□□□□ 0.91
LIMS2-213ENST00000469300 CEP162Q5TB80 1403 aa20.75■□□□□ 0.91
LIMS2-213ENST00000469300 PDS5BQ9NTI5 1447 aa20.71■□□□□ 0.91
LIMS2-213ENST00000469300 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.71■□□□□ 0.91
LIMS2-213ENST00000469300 MROH2BQ7Z745 1585 aa20.67■□□□□ 0.9
LIMS2-213ENST00000469300 ZBTB47Q9UFB7 747 aaPredicted RBP20.66■□□□□ 0.9
LIMS2-213ENST00000469300 KCNH8Q96L42 1107 aa20.65■□□□□ 0.9
LIMS2-213ENST00000469300 CARMIL1Q5VZK9 1371 aa20.62■□□□□ 0.89
LIMS2-213ENST00000469300 CUX2O14529 1486 aa20.61■□□□□ 0.89
LIMS2-213ENST00000469300 CFDP1Q9UEE9 299 aaPredicted RBP20.61■□□□□ 0.89
LIMS2-213ENST00000469300 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
LIMS2-213ENST00000469300 FHAD1B1AJZ9 1412 aa20.59■□□□□ 0.89
LIMS2-213ENST00000469300 CANXP27824 592 aaKnown RBP20.55■□□□□ 0.88
LIMS2-213ENST00000469300 RRP7BPQ9NSQ0 103 aa20.52■□□□□ 0.88
LIMS2-213ENST00000469300 SLC24A1O60721 1099 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms