RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 RUSC2Q8N2Y8 1516 aa21.54■■□□□ 1.04
HDAC3-204ENST00000469207 KIF27Q86VH2 1401 aa21.49■■□□□ 1.03
HDAC3-204ENST00000469207 KIF13AQ9H1H9 1805 aa21.48■■□□□ 1.03
HDAC3-204ENST00000469207 NPM1P06748 294 aaKnown RBP eCLIP21.48■■□□□ 1.03
HDAC3-204ENST00000469207 FAM69CQ0P6D2 419 aa21.48■■□□□ 1.03
HDAC3-204ENST00000469207 TTBK1Q5TCY1 1321 aaPredicted RBP21.47■■□□□ 1.03
HDAC3-204ENST00000469207 KIAA0586Q9BVV6 1533 aa21.46■■□□□ 1.03
HDAC3-204ENST00000469207 CARMIL1Q5VZK9 1371 aa21.42■■□□□ 1.02
HDAC3-204ENST00000469207 ADCY10Q96PN6 1610 aa21.4■■□□□ 1.02
HDAC3-204ENST00000469207 ABCC10Q5T3U5 1492 aa21.39■■□□□ 1.01
HDAC3-204ENST00000469207 CUL7Q14999 1698 aa21.37■■□□□ 1.01
HDAC3-204ENST00000469207 PTPRGP23470 1445 aa21.34■■□□□ 1.01
HDAC3-204ENST00000469207 MAPKBP1O60336 1514 aa21.33■■□□□ 1
HDAC3-204ENST00000469207 DIP2BQ9P265 1576 aa21.31■■□□□ 1
HDAC3-204ENST00000469207 TNIKQ9UKE5 1360 aa21.25■□□□□ 0.99
HDAC3-204ENST00000469207 TSPOAP1O95153 1857 aa21.24■□□□□ 0.99
HDAC3-204ENST00000469207 CARMIL2Q6F5E8 1435 aa21.23■□□□□ 0.99
HDAC3-204ENST00000469207 IQGAP2Q13576 1575 aa21.21■□□□□ 0.99
HDAC3-204ENST00000469207 ABCC2Q92887 1545 aa21.18■□□□□ 0.98
HDAC3-204ENST00000469207 DISP1Q96F81 1524 aa21.18■□□□□ 0.98
HDAC3-204ENST00000469207 RAPGEF2Q9Y4G8 1499 aa21.16■□□□□ 0.98
HDAC3-204ENST00000469207 ASXL2Q76L83 1435 aa21.16■□□□□ 0.98
HDAC3-204ENST00000469207 KDM4FA0A1W2PPD8 638 aa21.15■□□□□ 0.98
HDAC3-204ENST00000469207 KDM6BO15054 1643 aa21.15■□□□□ 0.98
HDAC3-204ENST00000469207 UACAQ9BZF9 1416 aa21.13■□□□□ 0.97
HDAC3-204ENST00000469207 UHRF1BP1LA0JNW5 1464 aa21.1■□□□□ 0.97
HDAC3-204ENST00000469207 PLB1Q6P1J6 1458 aa21.08■□□□□ 0.97
HDAC3-204ENST00000469207 UGGT2Q9NYU1 1516 aa21.08■□□□□ 0.96
HDAC3-204ENST00000469207 KDM5BQ9UGL1 1544 aa21.04■□□□□ 0.96
HDAC3-204ENST00000469207 PPRC1Q5VV67 1664 aaKnown RBP21.03■□□□□ 0.96
HDAC3-204ENST00000469207 KIAA0556O60303 1618 aa21.03■□□□□ 0.96
HDAC3-204ENST00000469207 GLI2P10070 1586 aa21.02■□□□□ 0.96
HDAC3-204ENST00000469207 COL17A1Q9UMD9 1497 aaPredicted RBP21.01■□□□□ 0.95
HDAC3-204ENST00000469207 EPRSP07814 1512 aaKnown RBP21.01■□□□□ 0.95
HDAC3-204ENST00000469207 ZCCHC11Q5TAX3 1644 aaKnown RBP20.99■□□□□ 0.95
HDAC3-204ENST00000469207 KCNH8Q96L42 1107 aa20.96■□□□□ 0.95
HDAC3-204ENST00000469207 P3H3Q8IVL6 736 aa20.94■□□□□ 0.94
HDAC3-204ENST00000469207 MAP3K4Q9Y6R4 1608 aa20.93■□□□□ 0.94
HDAC3-204ENST00000469207 ARID3CA6NKF2 412 aa20.92■□□□□ 0.94
HDAC3-204ENST00000469207 PRXQ9BXM0 1461 aa20.92■□□□□ 0.94
HDAC3-204ENST00000469207 CTTNBP2Q8WZ74 1663 aa20.92■□□□□ 0.94
HDAC3-204ENST00000469207 WDR7Q9Y4E6 1490 aa20.88■□□□□ 0.93
HDAC3-204ENST00000469207 GOLGA3Q08378 1498 aa20.87■□□□□ 0.93
HDAC3-204ENST00000469207 ABCA8O94911 1581 aa20.85■□□□□ 0.93
HDAC3-204ENST00000469207 ADGRL1O94910 1474 aa20.84■□□□□ 0.93
HDAC3-204ENST00000469207 TEX14Q8IWB6 1497 aa20.84■□□□□ 0.93
HDAC3-204ENST00000469207 CD109Q6YHK3 1445 aa20.83■□□□□ 0.93
HDAC3-204ENST00000469207 CSRNP3Q8WYN3 585 aa20.82■□□□□ 0.92
HDAC3-204ENST00000469207 RANGAP1P46060 587 aaPredicted RBP20.8■□□□□ 0.92
HDAC3-204ENST00000469207 ATP10BO94823 1461 aa20.76■□□□□ 0.91
HDAC3-204ENST00000469207 FAM9AQ8IZU1 332 aaPredicted RBP20.75■□□□□ 0.91
HDAC3-204ENST00000469207 MAGI3Q5TCQ9 1506 aa20.74■□□□□ 0.91
HDAC3-204ENST00000469207 CFAP43Q8NDM7 1665 aa20.72■□□□□ 0.91
HDAC3-204ENST00000469207 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.7■□□□□ 0.9
HDAC3-204ENST00000469207 HNRNPUL2Q1KMD3 747 aaKnown RBP20.7■□□□□ 0.9
HDAC3-204ENST00000469207 SAMD9Q5K651 1589 aa20.64■□□□□ 0.9
HDAC3-204ENST00000469207 RAPGEF3O95398 923 aa20.63■□□□□ 0.89
HDAC3-204ENST00000469207 EHMT2Q96KQ7 1210 aa20.62■□□□□ 0.89
HDAC3-204ENST00000469207 FHOD3Q2V2M9 1422 aa20.61■□□□□ 0.89
HDAC3-204ENST00000469207 ILDR1Q86SU0 546 aaPredicted RBP20.61■□□□□ 0.89
HDAC3-204ENST00000469207 RAPGEF6Q8TEU7 1601 aa20.6■□□□□ 0.89
HDAC3-204ENST00000469207 ARAP3Q8WWN8 1544 aa20.59■□□□□ 0.89
HDAC3-204ENST00000469207 KIF21BO75037 1637 aa20.58■□□□□ 0.89
HDAC3-204ENST00000469207 NUP153P49790 1475 aaKnown RBP20.57■□□□□ 0.88
HDAC3-204ENST00000469207 HECW2Q9P2P5 1572 aa20.57■□□□□ 0.88
HDAC3-204ENST00000469207 ABCA9Q8IUA7 1624 aa20.56■□□□□ 0.88
HDAC3-204ENST00000469207 EEA1Q15075 1411 aa20.54■□□□□ 0.88
HDAC3-204ENST00000469207 PLEKHD1A6NEE1 506 aa20.52■□□□□ 0.88
HDAC3-204ENST00000469207 PHLDB1Q86UU1 1377 aa20.49■□□□□ 0.87
HDAC3-204ENST00000469207 NEO1Q92859 1461 aa20.48■□□□□ 0.87
HDAC3-204ENST00000469207 ARID4BQ4LE39 1312 aaPredicted RBP20.46■□□□□ 0.87
HDAC3-204ENST00000469207 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
HDAC3-204ENST00000469207 ATP1B4Q9UN42 357 aaPredicted RBP20.44■□□□□ 0.86
HDAC3-204ENST00000469207 FRMPD1Q5SYB0 1578 aa20.43■□□□□ 0.86
HDAC3-204ENST00000469207 AKNAQ7Z591 1439 aa20.41■□□□□ 0.86
HDAC3-204ENST00000469207 PTPRMP28827 1452 aa20.4■□□□□ 0.86
HDAC3-204ENST00000469207 CHIC1Q5VXU3 224 aa20.4■□□□□ 0.86
HDAC3-204ENST00000469207 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.4■□□□□ 0.86
HDAC3-204ENST00000469207 ADAMTSL3P82987 1691 aa20.39■□□□□ 0.86
HDAC3-204ENST00000469207 CDK13Q14004 1512 aaKnown RBP20.39■□□□□ 0.85
HDAC3-204ENST00000469207 FANCAO15360 1455 aa20.37■□□□□ 0.85
HDAC3-204ENST00000469207 DENND4BO75064 1496 aaPredicted RBP20.37■□□□□ 0.85
HDAC3-204ENST00000469207 EFCAB5A4FU69 1503 aa20.37■□□□□ 0.85
HDAC3-204ENST00000469207 PLPPR3Q6T4P5 718 aa20.36■□□□□ 0.85
HDAC3-204ENST00000469207 TTC37Q6PGP7 1564 aa20.36■□□□□ 0.85
HDAC3-204ENST00000469207 BCORL1Q5H9F3 1711 aa20.33■□□□□ 0.85
HDAC3-204ENST00000469207 MADDQ8WXG6 1647 aa20.32■□□□□ 0.84
HDAC3-204ENST00000469207 RICTORQ6R327 1708 aa20.32■□□□□ 0.84
HDAC3-204ENST00000469207 YEATS2Q9ULM3 1422 aa20.31■□□□□ 0.84
HDAC3-204ENST00000469207 ARHGAP35Q9NRY4 1499 aa20.3■□□□□ 0.84
HDAC3-204ENST00000469207 MLECQ14165 292 aa20.3■□□□□ 0.84
HDAC3-204ENST00000469207 PLCH2O75038 1416 aa20.28■□□□□ 0.84
HDAC3-204ENST00000469207 SCAPERQ9BY12 1400 aa20.28■□□□□ 0.84
HDAC3-204ENST00000469207 SIGLEC1Q9BZZ2 1709 aa20.27■□□□□ 0.83
HDAC3-204ENST00000469207 ARHGEF40Q8TER5 1519 aa20.27■□□□□ 0.83
HDAC3-204ENST00000469207 FMN1Q68DA7 1419 aa20.25■□□□□ 0.83
HDAC3-204ENST00000469207 RIMS1Q86UR5 1692 aaKnown RBP20.24■□□□□ 0.83
HDAC3-204ENST00000469207 HSPA2P54652 639 aa20.24■□□□□ 0.83
HDAC3-204ENST00000469207 HECW1Q76N89 1606 aa20.24■□□□□ 0.83
HDAC3-204ENST00000469207 CFAP74Q9C0B2 1584 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms