RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 KIF27Q86VH2 1401 aa29.88■■■□□ 2.37
CPSF4-209ENST00000465132 KIAA0586Q9BVV6 1533 aa29.81■■■□□ 2.36
CPSF4-209ENST00000465132 CUL7Q14999 1698 aa29.79■■■□□ 2.36
CPSF4-209ENST00000465132 KIF13AQ9H1H9 1805 aa29.73■■■□□ 2.35
CPSF4-209ENST00000465132 NPM1P06748 294 aaKnown RBP eCLIP29.72■■■□□ 2.35
CPSF4-209ENST00000465132 AEBP2Q6ZN18 517 aaPredicted RBP29.72■■■□□ 2.35
CPSF4-209ENST00000465132 CARMIL1Q5VZK9 1371 aa29.68■■■□□ 2.34
CPSF4-209ENST00000465132 ADCY10Q96PN6 1610 aa29.67■■■□□ 2.34
CPSF4-209ENST00000465132 MAPKBP1O60336 1514 aa29.66■■■□□ 2.34
CPSF4-209ENST00000465132 ABCC10Q5T3U5 1492 aa29.66■■■□□ 2.34
CPSF4-209ENST00000465132 FAM69CQ0P6D2 419 aa29.65■■■□□ 2.34
CPSF4-209ENST00000465132 DIP2BQ9P265 1576 aa29.56■■■□□ 2.32
CPSF4-209ENST00000465132 PTPRGP23470 1445 aa29.55■■■□□ 2.32
CPSF4-209ENST00000465132 CARMIL2Q6F5E8 1435 aa29.51■■■□□ 2.31
CPSF4-209ENST00000465132 TNIKQ9UKE5 1360 aa29.49■■■□□ 2.31
CPSF4-209ENST00000465132 IQGAP2Q13576 1575 aa29.47■■■□□ 2.31
CPSF4-209ENST00000465132 TTBK1Q5TCY1 1321 aaPredicted RBP29.46■■■□□ 2.31
CPSF4-209ENST00000465132 ABCC2Q92887 1545 aa29.4■■■□□ 2.3
CPSF4-209ENST00000465132 RAPGEF2Q9Y4G8 1499 aa29.39■■■□□ 2.3
CPSF4-209ENST00000465132 DISP1Q96F81 1524 aa29.37■■■□□ 2.29
CPSF4-209ENST00000465132 UHRF1BP1LA0JNW5 1464 aa29.35■■■□□ 2.29
CPSF4-209ENST00000465132 UACAQ9BZF9 1416 aa29.32■■■□□ 2.28
CPSF4-209ENST00000465132 KDM6BO15054 1643 aa29.31■■■□□ 2.28
CPSF4-209ENST00000465132 UGGT2Q9NYU1 1516 aa29.31■■■□□ 2.28
CPSF4-209ENST00000465132 ASXL2Q76L83 1435 aa29.31■■■□□ 2.28
CPSF4-209ENST00000465132 PLB1Q6P1J6 1458 aa29.29■■■□□ 2.28
CPSF4-209ENST00000465132 TSPOAP1O95153 1857 aa29.29■■■□□ 2.28
CPSF4-209ENST00000465132 GLI2P10070 1586 aa29.23■■■□□ 2.27
CPSF4-209ENST00000465132 KIAA0556O60303 1618 aa29.22■■■□□ 2.27
CPSF4-209ENST00000465132 KDM5BQ9UGL1 1544 aa29.2■■■□□ 2.27
CPSF4-209ENST00000465132 CHIC1Q5VXU3 224 aa29.14■■■□□ 2.26
CPSF4-209ENST00000465132 PPRC1Q5VV67 1664 aaKnown RBP29.14■■■□□ 2.26
CPSF4-209ENST00000465132 EPRSP07814 1512 aaKnown RBP29.13■■■□□ 2.25
CPSF4-209ENST00000465132 KDM4FA0A1W2PPD8 638 aa29.11■■■□□ 2.25
CPSF4-209ENST00000465132 ZCCHC11Q5TAX3 1644 aaKnown RBP29.11■■■□□ 2.25
CPSF4-209ENST00000465132 CTTNBP2Q8WZ74 1663 aa29.09■■■□□ 2.25
CPSF4-209ENST00000465132 PRXQ9BXM0 1461 aa29.08■■■□□ 2.25
CPSF4-209ENST00000465132 GOLGA3Q08378 1498 aa29.06■■■□□ 2.24
CPSF4-209ENST00000465132 MAP3K4Q9Y6R4 1608 aa29.05■■■□□ 2.24
CPSF4-209ENST00000465132 COL17A1Q9UMD9 1497 aaPredicted RBP29■■■□□ 2.23
CPSF4-209ENST00000465132 WDR7Q9Y4E6 1490 aa29■■■□□ 2.23
CPSF4-209ENST00000465132 TEX14Q8IWB6 1497 aa28.99■■■□□ 2.23
CPSF4-209ENST00000465132 ABCA8O94911 1581 aa28.96■■■□□ 2.23
CPSF4-209ENST00000465132 KCNH8Q96L42 1107 aa28.86■■■□□ 2.21
CPSF4-209ENST00000465132 EEA1Q15075 1411 aa28.86■■■□□ 2.21
CPSF4-209ENST00000465132 CSRNP3Q8WYN3 585 aa28.84■■■□□ 2.21
CPSF4-209ENST00000465132 CD109Q6YHK3 1445 aa28.84■■■□□ 2.21
CPSF4-209ENST00000465132 ADGRL1O94910 1474 aa28.84■■■□□ 2.21
CPSF4-209ENST00000465132 MAGI3Q5TCQ9 1506 aa28.83■■■□□ 2.21
CPSF4-209ENST00000465132 P3H3Q8IVL6 736 aa28.81■■■□□ 2.2
CPSF4-209ENST00000465132 CFAP43Q8NDM7 1665 aa28.8■■■□□ 2.2
CPSF4-209ENST00000465132 FAM9AQ8IZU1 332 aaPredicted RBP28.8■■■□□ 2.2
CPSF4-209ENST00000465132 ATP10BO94823 1461 aa28.74■■■□□ 2.19
CPSF4-209ENST00000465132 ARID3CA6NKF2 412 aa28.74■■■□□ 2.19
CPSF4-209ENST00000465132 SAMD9Q5K651 1589 aa28.72■■■□□ 2.19
CPSF4-209ENST00000465132 RAPGEF6Q8TEU7 1601 aa28.61■■■□□ 2.17
CPSF4-209ENST00000465132 ARAP3Q8WWN8 1544 aa28.6■■■□□ 2.17
CPSF4-209ENST00000465132 ABCA9Q8IUA7 1624 aa28.58■■■□□ 2.17
CPSF4-209ENST00000465132 RANGAP1P46060 587 aaPredicted RBP28.57■■■□□ 2.16
CPSF4-209ENST00000465132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
CPSF4-209ENST00000465132 HNRNPUL2Q1KMD3 747 aaKnown RBP28.55■■■□□ 2.16
CPSF4-209ENST00000465132 NUP153P49790 1475 aaKnown RBP28.54■■■□□ 2.16
CPSF4-209ENST00000465132 PHLDB1Q86UU1 1377 aa28.54■■■□□ 2.16
CPSF4-209ENST00000465132 FHOD3Q2V2M9 1422 aa28.53■■■□□ 2.16
CPSF4-209ENST00000465132 KIF21BO75037 1637 aa28.48■■■□□ 2.15
CPSF4-209ENST00000465132 NEO1Q92859 1461 aa28.47■■■□□ 2.15
CPSF4-209ENST00000465132 HECW2Q9P2P5 1572 aa28.45■■■□□ 2.15
CPSF4-209ENST00000465132 RAPGEF3O95398 923 aa28.44■■■□□ 2.14
CPSF4-209ENST00000465132 EFCAB5A4FU69 1503 aa28.43■■■□□ 2.14
CPSF4-209ENST00000465132 PLEKHD1A6NEE1 506 aa28.41■■■□□ 2.14
CPSF4-209ENST00000465132 FRMPD1Q5SYB0 1578 aa28.34■■■□□ 2.13
CPSF4-209ENST00000465132 ILDR1Q86SU0 546 aaPredicted RBP28.3■■■□□ 2.12
CPSF4-209ENST00000465132 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.29■■■□□ 2.12
CPSF4-209ENST00000465132 AKNAQ7Z591 1439 aa28.27■■■□□ 2.12
CPSF4-209ENST00000465132 ADAMTSL3P82987 1691 aa28.27■■■□□ 2.12
CPSF4-209ENST00000465132 FANCAO15360 1455 aa28.27■■■□□ 2.12
CPSF4-209ENST00000465132 DENND4BO75064 1496 aaPredicted RBP28.27■■■□□ 2.12
CPSF4-209ENST00000465132 UBTFP17480 764 aaKnown RBP28.26■■■□□ 2.11
CPSF4-209ENST00000465132 EHMT2Q96KQ7 1210 aa28.25■■■□□ 2.11
CPSF4-209ENST00000465132 PTPRMP28827 1452 aa28.25■■■□□ 2.11
CPSF4-209ENST00000465132 CDK13Q14004 1512 aaKnown RBP28.24■■■□□ 2.11
CPSF4-209ENST00000465132 TTC37Q6PGP7 1564 aa28.24■■■□□ 2.11
CPSF4-209ENST00000465132 ARID4BQ4LE39 1312 aaPredicted RBP28.22■■■□□ 2.11
CPSF4-209ENST00000465132 CFAP74Q9C0B2 1584 aa28.22■■■□□ 2.11
CPSF4-209ENST00000465132 ARHGEF40Q8TER5 1519 aa28.2■■■□□ 2.1
CPSF4-209ENST00000465132 BCORL1Q5H9F3 1711 aa28.2■■■□□ 2.1
CPSF4-209ENST00000465132 RICTORQ6R327 1708 aa28.2■■■□□ 2.1
CPSF4-209ENST00000465132 FMN1Q68DA7 1419 aa28.18■■■□□ 2.1
CPSF4-209ENST00000465132 ARHGAP35Q9NRY4 1499 aa28.17■■■□□ 2.1
CPSF4-209ENST00000465132 ATP1B4Q9UN42 357 aaPredicted RBP28.14■■■□□ 2.1
CPSF4-209ENST00000465132 MADDQ8WXG6 1647 aa28.14■■■□□ 2.09
CPSF4-209ENST00000465132 ZMYM4Q5VZL5 1548 aa28.13■■■□□ 2.09
CPSF4-209ENST00000465132 PLCH2O75038 1416 aa28.13■■■□□ 2.09
CPSF4-209ENST00000465132 HECW1Q76N89 1606 aa28.13■■■□□ 2.09
CPSF4-209ENST00000465132 MAGI2Q86UL8 1455 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 ZFYVE16Q7Z3T8 1539 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 CDK11AQ9UQ88 783 aaPredicted RBP28.08■■■□□ 2.09
CPSF4-209ENST00000465132 SCAPERQ9BY12 1400 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 YEATS2Q9ULM3 1422 aa28.08■■■□□ 2.09
CPSF4-209ENST00000465132 POGZQ7Z3K3 1410 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms