RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 OSCARQ8IYS5 282 aa16.65■□□□□ 0.26
UPF2-204ENST00000460569 IQGAP2Q13576 1575 aa16.63■□□□□ 0.25
UPF2-204ENST00000460569 KIAA0586Q9BVV6 1533 aa16.62■□□□□ 0.25
UPF2-204ENST00000460569 UBTFP17480 764 aaKnown RBP16.59■□□□□ 0.25
UPF2-204ENST00000460569 SHROOM2Q13796 1616 aa16.58■□□□□ 0.24
UPF2-204ENST00000460569 LOC105371045A0A1W2PR82 267 aa16.53■□□□□ 0.24
UPF2-204ENST00000460569 UGGT2Q9NYU1 1516 aa16.52■□□□□ 0.24
UPF2-204ENST00000460569 TNIKQ9UKE5 1360 aa16.51■□□□□ 0.23
UPF2-204ENST00000460569 JPH4Q96JJ6 628 aa16.49■□□□□ 0.23
UPF2-204ENST00000460569 PRG4Q92954 1404 aaPredicted RBP16.48■□□□□ 0.23
UPF2-204ENST00000460569 ERCC6L2Q5T890 1561 aa16.47■□□□□ 0.23
UPF2-204ENST00000460569 RANGAP1P46060 587 aaPredicted RBP16.47■□□□□ 0.23
UPF2-204ENST00000460569 KIAA0556O60303 1618 aa16.47■□□□□ 0.23
UPF2-204ENST00000460569 SAMD9Q5K651 1589 aa16.47■□□□□ 0.23
UPF2-204ENST00000460569 ARHGEF11O15085 1522 aa16.46■□□□□ 0.23
UPF2-204ENST00000460569 RIMBP3CA6NJZ7 1639 aa16.45■□□□□ 0.22
UPF2-204ENST00000460569 RIMBP3BA6NNM3 1639 aa16.45■□□□□ 0.22
UPF2-204ENST00000460569 RIMBP3Q9UFD9 1639 aa16.45■□□□□ 0.22
UPF2-204ENST00000460569 EFCAB5A4FU69 1503 aa16.45■□□□□ 0.22
UPF2-204ENST00000460569 DISP1Q96F81 1524 aa16.45■□□□□ 0.22
UPF2-204ENST00000460569 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
UPF2-204ENST00000460569 CEP162Q5TB80 1403 aa16.42■□□□□ 0.22
UPF2-204ENST00000460569 CLIP1P30622 1438 aa16.4■□□□□ 0.22
UPF2-204ENST00000460569 ARHGAP35Q9NRY4 1499 aa16.39■□□□□ 0.21
UPF2-204ENST00000460569 DNAJC5Q9H3Z4 198 aa16.37■□□□□ 0.21
UPF2-204ENST00000460569 FHOD3Q2V2M9 1422 aa16.36■□□□□ 0.21
UPF2-204ENST00000460569 P3H3Q8IVL6 736 aa16.36■□□□□ 0.21
UPF2-204ENST00000460569 ARAP1Q96P48 1450 aa16.35■□□□□ 0.21
UPF2-204ENST00000460569 TTBK1Q5TCY1 1321 aaPredicted RBP16.33■□□□□ 0.2
UPF2-204ENST00000460569 PTPRGP23470 1445 aa16.3■□□□□ 0.2
UPF2-204ENST00000460569 FMN1Q68DA7 1419 aa16.26■□□□□ 0.19
UPF2-204ENST00000460569 RAPGEF6Q8TEU7 1601 aa16.26■□□□□ 0.19
UPF2-204ENST00000460569 ABCA8O94911 1581 aa16.25■□□□□ 0.19
UPF2-204ENST00000460569 PLB1Q6P1J6 1458 aa16.24■□□□□ 0.19
UPF2-204ENST00000460569 PCF11O94913 1555 aaKnown RBP16.24■□□□□ 0.19
UPF2-204ENST00000460569 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
UPF2-204ENST00000460569 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
UPF2-204ENST00000460569 ABCC2Q92887 1545 aa16.22■□□□□ 0.19
UPF2-204ENST00000460569 UACAQ9BZF9 1416 aa16.21■□□□□ 0.19
UPF2-204ENST00000460569 HECW1Q76N89 1606 aa16.2■□□□□ 0.18
UPF2-204ENST00000460569 UHRF1BP1LA0JNW5 1464 aa16.19■□□□□ 0.18
UPF2-204ENST00000460569 VPS8Q8N3P4 1428 aa16.19■□□□□ 0.18
UPF2-204ENST00000460569 FYCO1Q9BQS8 1478 aa16.17■□□□□ 0.18
UPF2-204ENST00000460569 CASKIN1Q8WXD9 1431 aa16.16■□□□□ 0.18
UPF2-204ENST00000460569 LRRIQ1Q96JM4 1722 aa16.16■□□□□ 0.18
UPF2-204ENST00000460569 NUP153P49790 1475 aaKnown RBP16.16■□□□□ 0.18
UPF2-204ENST00000460569 ZCCHC11Q5TAX3 1644 aaKnown RBP16.15■□□□□ 0.18
UPF2-204ENST00000460569 ATP1B4Q9UN42 357 aaPredicted RBP16.13■□□□□ 0.17
UPF2-204ENST00000460569 KDM5BQ9UGL1 1544 aa16.11■□□□□ 0.17
UPF2-204ENST00000460569 ARID3CA6NKF2 412 aa16.11■□□□□ 0.17
UPF2-204ENST00000460569 CDK13Q14004 1512 aaKnown RBP16.1■□□□□ 0.17
UPF2-204ENST00000460569 CCDC18Q5T9S5 1454 aa16.1■□□□□ 0.17
UPF2-204ENST00000460569 EPRSP07814 1512 aaKnown RBP16.09■□□□□ 0.17
UPF2-204ENST00000460569 CFAP43Q8NDM7 1665 aa16.09■□□□□ 0.17
UPF2-204ENST00000460569 ATP10BO94823 1461 aa16.08■□□□□ 0.16
UPF2-204ENST00000460569 NPM1P06748 294 aaKnown RBP eCLIP16.07■□□□□ 0.16
UPF2-204ENST00000460569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.05■□□□□ 0.16
UPF2-204ENST00000460569 HNRNPUL2Q1KMD3 747 aaKnown RBP16.05■□□□□ 0.16
UPF2-204ENST00000460569 TIAM1Q13009 1591 aa16.04■□□□□ 0.16
UPF2-204ENST00000460569 MAPKBP1O60336 1514 aa16.04■□□□□ 0.16
UPF2-204ENST00000460569 ASXL2Q76L83 1435 aa16■□□□□ 0.15
UPF2-204ENST00000460569 MAP3K1Q13233 1512 aa15.99■□□□□ 0.15
UPF2-204ENST00000460569 WDR7Q9Y4E6 1490 aa15.99■□□□□ 0.15
UPF2-204ENST00000460569 APLP2Q06481 763 aa15.99■□□□□ 0.15
UPF2-204ENST00000460569 MAGI3Q5TCQ9 1506 aa15.98■□□□□ 0.15
UPF2-204ENST00000460569 EHBP1L1Q8N3D4 1523 aa15.96■□□□□ 0.15
UPF2-204ENST00000460569 CDK11AQ9UQ88 783 aaPredicted RBP15.96■□□□□ 0.15
UPF2-204ENST00000460569 KIF14Q15058 1648 aa15.95■□□□□ 0.14
UPF2-204ENST00000460569 TROQ12816 1431 aaPredicted RBP15.94■□□□□ 0.14
UPF2-204ENST00000460569 PLEKHD1A6NEE1 506 aa15.94■□□□□ 0.14
UPF2-204ENST00000460569 MTUS2Q5JR59 1369 aa15.94■□□□□ 0.14
UPF2-204ENST00000460569 DIP2BQ9P265 1576 aa15.94■□□□□ 0.14
UPF2-204ENST00000460569 LRRC9Q6ZRR7 1453 aa15.93■□□□□ 0.14
UPF2-204ENST00000460569 KIF13AQ9H1H9 1805 aa15.91■□□□□ 0.14
UPF2-204ENST00000460569 SUPT6HQ7KZ85 1726 aaKnown RBP15.91■□□□□ 0.14
UPF2-204ENST00000460569 ABCC10Q5T3U5 1492 aa15.9■□□□□ 0.14
UPF2-204ENST00000460569 TTC37Q6PGP7 1564 aa15.89■□□□□ 0.13
UPF2-204ENST00000460569 KCNH8Q96L42 1107 aa15.89■□□□□ 0.13
UPF2-204ENST00000460569 ABCA9Q8IUA7 1624 aa15.88■□□□□ 0.13
UPF2-204ENST00000460569 KANK4Q5T7N3 995 aaPredicted RBP15.88■□□□□ 0.13
UPF2-204ENST00000460569 GLI2P10070 1586 aa15.87■□□□□ 0.13
UPF2-204ENST00000460569 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.87■□□□□ 0.13
UPF2-204ENST00000460569 MYO5CQ9NQX4 1742 aa15.85■□□□□ 0.13
UPF2-204ENST00000460569 MAP3K4Q9Y6R4 1608 aa15.85■□□□□ 0.13
UPF2-204ENST00000460569 NCOA2Q15596 1464 aa15.84■□□□□ 0.13
UPF2-204ENST00000460569 FAM69CQ0P6D2 419 aa15.83■□□□□ 0.12
UPF2-204ENST00000460569 ITSN2Q9NZM3 1697 aa15.83■□□□□ 0.12
UPF2-204ENST00000460569 CDC42BPAQ5VT25 1732 aa15.82■□□□□ 0.12
UPF2-204ENST00000460569 TSPOAP1O95153 1857 aa15.82■□□□□ 0.12
UPF2-204ENST00000460569 PPARGC1BQ86YN6 1023 aaKnown RBP15.82■□□□□ 0.12
UPF2-204ENST00000460569 PREX2Q70Z35 1606 aa15.82■□□□□ 0.12
UPF2-204ENST00000460569 TRHP20396 242 aaPredicted RBP15.81■□□□□ 0.12
UPF2-204ENST00000460569 CD109Q6YHK3 1445 aa15.78■□□□□ 0.12
UPF2-204ENST00000460569 CCNB3Q8WWL7 1395 aa15.78■□□□□ 0.12
UPF2-204ENST00000460569 CDC42BPBQ9Y5S2 1711 aa15.78■□□□□ 0.12
UPF2-204ENST00000460569 PPRC1Q5VV67 1664 aaKnown RBP15.78■□□□□ 0.12
UPF2-204ENST00000460569 ARHGAP5Q13017 1502 aa15.76■□□□□ 0.11
UPF2-204ENST00000460569 CFAP74Q9C0B2 1584 aa15.75■□□□□ 0.11
UPF2-204ENST00000460569 ARAP3Q8WWN8 1544 aa15.75■□□□□ 0.11
UPF2-204ENST00000460569 GPATCH8Q9UKJ3 1502 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms