RNA–Protein interactions for RNA: ENST00000458038.5

CPNE1-220, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-220ENST00000458038 IGF1RP08069 1367 aa37.69■■■■□ 3.62
CPNE1-220ENST00000458038 CUL7Q14999 1698 aa37.64■■■■□ 3.62
CPNE1-220ENST00000458038 KIAA0586Q9BVV6 1533 aa37.62■■■■□ 3.61
CPNE1-220ENST00000458038 NPM1P06748 294 aaKnown RBP eCLIP37.56■■■■□ 3.6
CPNE1-220ENST00000458038 KIF13AQ9H1H9 1805 aa37.53■■■■□ 3.6
CPNE1-220ENST00000458038 AEBP2Q6ZN18 517 aaPredicted RBP37.5■■■■□ 3.59
CPNE1-220ENST00000458038 CARMIL1Q5VZK9 1371 aa37.44■■■■□ 3.58
CPNE1-220ENST00000458038 MAPKBP1O60336 1514 aa37.42■■■■□ 3.58
CPNE1-220ENST00000458038 ABCC10Q5T3U5 1492 aa37.39■■■■□ 3.58
CPNE1-220ENST00000458038 ADCY10Q96PN6 1610 aa37.39■■■■□ 3.58
CPNE1-220ENST00000458038 FAM69CQ0P6D2 419 aa37.37■■■■□ 3.57
CPNE1-220ENST00000458038 PTPRGP23470 1445 aa37.28■■■■□ 3.56
CPNE1-220ENST00000458038 CARMIL2Q6F5E8 1435 aa37.28■■■■□ 3.56
CPNE1-220ENST00000458038 DIP2BQ9P265 1576 aa37.25■■■■□ 3.55
CPNE1-220ENST00000458038 TNIKQ9UKE5 1360 aa37.21■■■■□ 3.55
CPNE1-220ENST00000458038 IQGAP2Q13576 1575 aa37.21■■■■□ 3.55
CPNE1-220ENST00000458038 RAPGEF2Q9Y4G8 1499 aa37.09■■■■□ 3.53
CPNE1-220ENST00000458038 ABCC2Q92887 1545 aa37.09■■■■□ 3.53
CPNE1-220ENST00000458038 TTBK1Q5TCY1 1321 aaPredicted RBP37.06■■■■□ 3.52
CPNE1-220ENST00000458038 UHRF1BP1LA0JNW5 1464 aa37.03■■■■□ 3.52
CPNE1-220ENST00000458038 DISP1Q96F81 1524 aa37■■■■□ 3.51
CPNE1-220ENST00000458038 TSPOAP1O95153 1857 aa37■■■■□ 3.51
CPNE1-220ENST00000458038 UACAQ9BZF9 1416 aa36.99■■■■□ 3.51
CPNE1-220ENST00000458038 PLB1Q6P1J6 1458 aa36.99■■■■□ 3.51
CPNE1-220ENST00000458038 UGGT2Q9NYU1 1516 aa36.99■■■■□ 3.51
CPNE1-220ENST00000458038 KDM6BO15054 1643 aa36.97■■■■□ 3.51
CPNE1-220ENST00000458038 ASXL2Q76L83 1435 aa36.94■■■■□ 3.5
CPNE1-220ENST00000458038 GLI2P10070 1586 aa36.89■■■■□ 3.5
CPNE1-220ENST00000458038 KDM5BQ9UGL1 1544 aa36.85■■■■□ 3.49
CPNE1-220ENST00000458038 KIAA0556O60303 1618 aa36.84■■■■□ 3.49
CPNE1-220ENST00000458038 CTTNBP2Q8WZ74 1663 aa36.77■■■■□ 3.48
CPNE1-220ENST00000458038 GOLGA3Q08378 1498 aa36.74■■■■□ 3.47
CPNE1-220ENST00000458038 PPRC1Q5VV67 1664 aaKnown RBP36.71■■■■□ 3.47
CPNE1-220ENST00000458038 ZCCHC11Q5TAX3 1644 aaKnown RBP36.71■■■■□ 3.47
CPNE1-220ENST00000458038 EPRSP07814 1512 aaKnown RBP36.71■■■■□ 3.47
CPNE1-220ENST00000458038 PRXQ9BXM0 1461 aa36.68■■■■□ 3.46
CPNE1-220ENST00000458038 MAP3K4Q9Y6R4 1608 aa36.64■■■■□ 3.46
CPNE1-220ENST00000458038 TEX14Q8IWB6 1497 aa36.62■■■■□ 3.45
CPNE1-220ENST00000458038 KDM4FA0A1W2PPD8 638 aa36.62■■■■□ 3.45
CPNE1-220ENST00000458038 WDR7Q9Y4E6 1490 aa36.58■■■■□ 3.45
CPNE1-220ENST00000458038 FAM9AQ8IZU1 332 aaPredicted RBP36.55■■■■□ 3.44
CPNE1-220ENST00000458038 ABCA8O94911 1581 aa36.53■■■■□ 3.44
CPNE1-220ENST00000458038 COL17A1Q9UMD9 1497 aaPredicted RBP36.47■■■■□ 3.43
CPNE1-220ENST00000458038 CSRNP3Q8WYN3 585 aa36.41■■■■□ 3.42
CPNE1-220ENST00000458038 CFAP43Q8NDM7 1665 aa36.4■■■■□ 3.42
CPNE1-220ENST00000458038 CD109Q6YHK3 1445 aa36.39■■■■□ 3.42
CPNE1-220ENST00000458038 MAGI3Q5TCQ9 1506 aa36.38■■■■□ 3.41
CPNE1-220ENST00000458038 KCNH8Q96L42 1107 aa36.37■■■■□ 3.41
CPNE1-220ENST00000458038 ADGRL1O94910 1474 aa36.31■■■■□ 3.4
CPNE1-220ENST00000458038 EEA1Q15075 1411 aa36.28■■■■□ 3.4
CPNE1-220ENST00000458038 P3H3Q8IVL6 736 aa36.26■■■■□ 3.4
CPNE1-220ENST00000458038 ATP10BO94823 1461 aa36.24■■■■□ 3.39
CPNE1-220ENST00000458038 SAMD9Q5K651 1589 aa36.23■■■■□ 3.39
CPNE1-220ENST00000458038 PHLDB1Q86UU1 1377 aa36.13■■■■□ 3.37
CPNE1-220ENST00000458038 RAPGEF6Q8TEU7 1601 aa36.12■■■■□ 3.37
CPNE1-220ENST00000458038 ARID3CA6NKF2 412 aa36.12■■■■□ 3.37
CPNE1-220ENST00000458038 ARAP3Q8WWN8 1544 aa36.11■■■■□ 3.37
CPNE1-220ENST00000458038 ABCA9Q8IUA7 1624 aa36.08■■■■□ 3.37
CPNE1-220ENST00000458038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.02■■■■□ 3.36
CPNE1-220ENST00000458038 HNRNPUL2Q1KMD3 747 aaKnown RBP36.02■■■■□ 3.36
CPNE1-220ENST00000458038 NUP153P49790 1475 aaKnown RBP35.97■■■■□ 3.35
CPNE1-220ENST00000458038 NEO1Q92859 1461 aa35.95■■■■□ 3.35
CPNE1-220ENST00000458038 FHOD3Q2V2M9 1422 aa35.93■■■■□ 3.34
CPNE1-220ENST00000458038 RANGAP1P46060 587 aaPredicted RBP35.93■■■■□ 3.34
CPNE1-220ENST00000458038 KIF21BO75037 1637 aa35.93■■■■□ 3.34
CPNE1-220ENST00000458038 EFCAB5A4FU69 1503 aa35.91■■■■□ 3.34
CPNE1-220ENST00000458038 PLEKHD1A6NEE1 506 aa35.89■■■■□ 3.34
CPNE1-220ENST00000458038 HECW2Q9P2P5 1572 aa35.82■■■■□ 3.32
CPNE1-220ENST00000458038 RAPGEF3O95398 923 aa35.82■■■■□ 3.32
CPNE1-220ENST00000458038 CFAP74Q9C0B2 1584 aa35.69■■■■□ 3.3
CPNE1-220ENST00000458038 FRMPD1Q5SYB0 1578 aa35.68■■■■□ 3.3
CPNE1-220ENST00000458038 UBTFP17480 764 aaKnown RBP35.68■■■■□ 3.3
CPNE1-220ENST00000458038 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.67■■■■□ 3.31e-38■■□□□ 13.2
CPNE1-220ENST00000458038 DENND4BO75064 1496 aaPredicted RBP35.67■■■■□ 3.3
CPNE1-220ENST00000458038 AKNAQ7Z591 1439 aa35.66■■■■□ 3.3
CPNE1-220ENST00000458038 ADAMTSL3P82987 1691 aa35.66■■■■□ 3.3
CPNE1-220ENST00000458038 FANCAO15360 1455 aa35.66■■■■□ 3.3
CPNE1-220ENST00000458038 FMN1Q68DA7 1419 aa35.62■■■■□ 3.29
CPNE1-220ENST00000458038 RICTORQ6R327 1708 aa35.6■■■■□ 3.29
CPNE1-220ENST00000458038 ARID4BQ4LE39 1312 aaPredicted RBP35.59■■■■□ 3.29
CPNE1-220ENST00000458038 CHIC1Q5VXU3 224 aa35.59■■■■□ 3.29
CPNE1-220ENST00000458038 ILDR1Q86SU0 546 aaPredicted RBP35.59■■■■□ 3.29
CPNE1-220ENST00000458038 PTPRMP28827 1452 aa35.59■■■■□ 3.29
CPNE1-220ENST00000458038 BCORL1Q5H9F3 1711 aa35.58■■■■□ 3.29
CPNE1-220ENST00000458038 TTC37Q6PGP7 1564 aa35.57■■■■□ 3.28
CPNE1-220ENST00000458038 CDK13Q14004 1512 aaKnown RBP35.56■■■■□ 3.28
CPNE1-220ENST00000458038 ARHGEF40Q8TER5 1519 aa35.56■■■■□ 3.28
CPNE1-220ENST00000458038 CDK11AQ9UQ88 783 aaPredicted RBP35.54■■■■□ 3.28
CPNE1-220ENST00000458038 HECW1Q76N89 1606 aa35.52■■■■□ 3.28
CPNE1-220ENST00000458038 PLCH2O75038 1416 aa35.5■■■■□ 3.27
CPNE1-220ENST00000458038 ARHGAP35Q9NRY4 1499 aa35.5■■■■□ 3.27
CPNE1-220ENST00000458038 ZMYM4Q5VZL5 1548 aa35.5■■■■□ 3.27
CPNE1-220ENST00000458038 EHMT2Q96KQ7 1210 aa35.49■■■■□ 3.27
CPNE1-220ENST00000458038 ATP1B4Q9UN42 357 aaPredicted RBP35.49■■■■□ 3.27
CPNE1-220ENST00000458038 MAGI2Q86UL8 1455 aa35.48■■■■□ 3.27
CPNE1-220ENST00000458038 MADDQ8WXG6 1647 aa35.45■■■■□ 3.27
CPNE1-220ENST00000458038 POGZQ7Z3K3 1410 aa35.44■■■■□ 3.26
CPNE1-220ENST00000458038 ZFYVE16Q7Z3T8 1539 aa35.42■■■■□ 3.26
CPNE1-220ENST00000458038 EFCAB2Q5VUJ9 269 aa35.41■■■■□ 3.26
CPNE1-220ENST00000458038 SCAPERQ9BY12 1400 aa35.4■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms