RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HNRNPUQ00839 825 aaKnown RBP eCLIP17.69■□□□□ 0.42
USP40-208ENST00000450966 RBM19Q9Y4C8 960 aaKnown RBP17.68■□□□□ 0.42
USP40-208ENST00000450966 VSIG10Q8N0Z9 540 aa17.67■□□□□ 0.42
USP40-208ENST00000450966 BAZ1AQ9NRL2 1556 aaPredicted RBP17.65■□□□□ 0.42
USP40-208ENST00000450966 EEA1Q15075 1411 aa17.65■□□□□ 0.42
USP40-208ENST00000450966 CANXP27824 592 aaKnown RBP17.64■□□□□ 0.42
USP40-208ENST00000450966 BECN1Q14457 450 aa17.63■□□□□ 0.41
USP40-208ENST00000450966 L1TD1Q5T7N2 865 aaKnown RBP17.62■□□□□ 0.41
USP40-208ENST00000450966 ARID3CA6NKF2 412 aa17.61■□□□□ 0.41
USP40-208ENST00000450966 TSPY4P0CV99 314 aa17.6■□□□□ 0.41
USP40-208ENST00000450966 TSPY10P0CW01 314 aa17.6■□□□□ 0.41
USP40-208ENST00000450966 HSP90AA2PQ14568 343 aaPredicted RBP17.59■□□□□ 0.41
USP40-208ENST00000450966 TSHZ2Q9NRE2 1034 aa17.59■□□□□ 0.41
USP40-208ENST00000450966 RSF1Q96T23 1441 aaPredicted RBP17.55■□□□□ 0.4
USP40-208ENST00000450966 PNNQ9H307 717 aaKnown RBP17.55■□□□□ 0.4
USP40-208ENST00000450966 PLEKHD1A6NEE1 506 aa17.53■□□□□ 0.4
USP40-208ENST00000450966 LAS1LQ9Y4W2 734 aaKnown RBP17.52■□□□□ 0.4
USP40-208ENST00000450966 KIF27Q86VH2 1401 aa17.51■□□□□ 0.39
USP40-208ENST00000450966 PDS5BQ9NTI5 1447 aa17.51■□□□□ 0.39
USP40-208ENST00000450966 DNTTIP2Q5QJE6 756 aaKnown RBP17.51■□□□□ 0.39
USP40-208ENST00000450966 MYO15BQ96JP2 1530 aa17.5■□□□□ 0.39
USP40-208ENST00000450966 AMER1Q5JTC6 1135 aaPredicted RBP17.5■□□□□ 0.39
USP40-208ENST00000450966 MTUS2Q5JR59 1369 aa17.5■□□□□ 0.39
USP40-208ENST00000450966 SMARCA2P51531 1590 aa17.49■□□□□ 0.39
USP40-208ENST00000450966 GOLGA6L22H0YM25 854 aa17.49■□□□□ 0.39
USP40-208ENST00000450966 PPP4R2Q9NY27 417 aa17.49■□□□□ 0.39
USP40-208ENST00000450966 CHGAP10645 457 aaKnown RBP17.47■□□□□ 0.39
USP40-208ENST00000450966 IRX6P78412 446 aaPredicted RBP17.45■□□□□ 0.38
USP40-208ENST00000450966 WRNQ14191 1432 aaPredicted RBP eCLIP17.45■□□□□ 0.38
USP40-208ENST00000450966 PTMAP06454 111 aaKnown RBP17.44■□□□□ 0.38
USP40-208ENST00000450966 DDX10Q13206 875 aaKnown RBP17.42■□□□□ 0.38
USP40-208ENST00000450966 PTMSP20962 102 aa17.4■□□□□ 0.38
USP40-208ENST00000450966 MSNP26038 577 aaKnown RBP17.4■□□□□ 0.38
USP40-208ENST00000450966 TNNT3P45378 269 aaPredicted RBP17.4■□□□□ 0.38
USP40-208ENST00000450966 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.4■□□□□ 0.38
USP40-208ENST00000450966 A0A0U1RQG5 324 aaPredicted RBP17.38■□□□□ 0.37
USP40-208ENST00000450966 ANO8Q9HCE9 1232 aaPredicted RBP17.37■□□□□ 0.37
USP40-208ENST00000450966 FAM9BQ8IZU0 186 aa17.36■□□□□ 0.37
USP40-208ENST00000450966 USP35Q9P2H5 1018 aa17.36■□□□□ 0.37
USP40-208ENST00000450966 GOLGA3Q08378 1498 aa17.34■□□□□ 0.37
USP40-208ENST00000450966 PLPPR3Q6T4P5 718 aa17.33■□□□□ 0.37
USP40-208ENST00000450966 TONSLQ96HA7 1378 aa17.33■□□□□ 0.36
USP40-208ENST00000450966 CHAF1AQ13111 956 aaPredicted RBP17.32■□□□□ 0.36
USP40-208ENST00000450966 ARID4BQ4LE39 1312 aaPredicted RBP17.31■□□□□ 0.36
USP40-208ENST00000450966 CLIP1P30622 1438 aa17.3■□□□□ 0.36
USP40-208ENST00000450966 PPP1R15AO75807 674 aaPredicted RBP17.3■□□□□ 0.36
USP40-208ENST00000450966 KCNH8Q96L42 1107 aa17.3■□□□□ 0.36
USP40-208ENST00000450966 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.29■□□□□ 0.361e-6■■■□□ 15.3
USP40-208ENST00000450966 CEP164Q9UPV0 1460 aa17.27■□□□□ 0.35
USP40-208ENST00000450966 UBE2Q2Q8WVN8 375 aa17.26■□□□□ 0.35
USP40-208ENST00000450966 CARMIL2Q6F5E8 1435 aa17.25■□□□□ 0.35
USP40-208ENST00000450966 FANCIQ9NVI1 1328 aa17.22■□□□□ 0.35
USP40-208ENST00000450966 IPO9Q96P70 1041 aaKnown RBP17.22■□□□□ 0.35
USP40-208ENST00000450966 CECR2Q9BXF3 1484 aa17.21■□□□□ 0.35
USP40-208ENST00000450966 TRHP20396 242 aaPredicted RBP17.21■□□□□ 0.35
USP40-208ENST00000450966 HDGFP51858 240 aaKnown RBP17.21■□□□□ 0.35
USP40-208ENST00000450966 MRS2Q9HD23 443 aa17.21■□□□□ 0.35
USP40-208ENST00000450966 TIMELESSQ9UNS1 1208 aa17.2■□□□□ 0.34
USP40-208ENST00000450966 CFDP1Q9UEE9 299 aaPredicted RBP17.19■□□□□ 0.34
USP40-208ENST00000450966 FHAD1B1AJZ9 1412 aa17.18■□□□□ 0.34
USP40-208ENST00000450966 C14orf37Q86TY3 774 aa17.16■□□□□ 0.34
USP40-208ENST00000450966 SALL2Q9Y467 1007 aaPredicted RBP17.15■□□□□ 0.34
USP40-208ENST00000450966 CHIC2Q9UKJ5 165 aa17.15■□□□□ 0.34
USP40-208ENST00000450966 TMC1Q8TDI8 760 aa17.13■□□□□ 0.33
USP40-208ENST00000450966 GOLGA6L3A6NEY3 463 aa17.12■□□□□ 0.33
USP40-208ENST00000450966 ABCC8Q09428 1581 aa17.12■□□□□ 0.33
USP40-208ENST00000450966 KANK1Q14678 1352 aa17.12■□□□□ 0.33
USP40-208ENST00000450966 CUX2O14529 1486 aa17.12■□□□□ 0.33
USP40-208ENST00000450966 CARMIL1Q5VZK9 1371 aa17.12■□□□□ 0.33
USP40-208ENST00000450966 GSE1Q14687 1217 aa17.12■□□□□ 0.33
USP40-208ENST00000450966 APPP05067 770 aa17.11■□□□□ 0.33
USP40-208ENST00000450966 CDCA8Q53HL2 280 aa17.1■□□□□ 0.33
USP40-208ENST00000450966 B4GALNT3Q6L9W6 998 aa17.1■□□□□ 0.33
USP40-208ENST00000450966 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
USP40-208ENST00000450966 ARID3AQ99856 593 aa17.08■□□□□ 0.33
USP40-208ENST00000450966 SOGA1O94964 1423 aa17.07■□□□□ 0.32
USP40-208ENST00000450966 CCNB3Q8WWL7 1395 aa17.06■□□□□ 0.32
USP40-208ENST00000450966 TNIKQ9UKE5 1360 aa17.06■□□□□ 0.32
USP40-208ENST00000450966 WDR43Q15061 677 aaKnown RBP eCLIP17.06■□□□□ 0.32
USP40-208ENST00000450966 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
USP40-208ENST00000450966 MAP7D2Q96T17 732 aa17.05■□□□□ 0.32
USP40-208ENST00000450966 HAP1P54257 671 aaPredicted RBP17.05■□□□□ 0.32
USP40-208ENST00000450966 KIAA2012Q0VF49 1180 aa17.04■□□□□ 0.32
USP40-208ENST00000450966 GOLGA6L6A8MZA4 724 aa17.04■□□□□ 0.32
USP40-208ENST00000450966 CALRP27797 417 aaKnown RBP17.03■□□□□ 0.32
USP40-208ENST00000450966 PDE4CQ08493 712 aa17.02■□□□□ 0.32
USP40-208ENST00000450966 NRDCO43847 1150 aa17.01■□□□□ 0.31
USP40-208ENST00000450966 MTERF4Q7Z6M4 381 aaKnown RBP17.01■□□□□ 0.31
USP40-208ENST00000450966 TCERG1O14776 1098 aaKnown RBP17■□□□□ 0.31
USP40-208ENST00000450966 TOP2AP11388 1531 aaKnown RBP17■□□□□ 0.31
USP40-208ENST00000450966 MYH16Q9H6N6 1097 aa16.99■□□□□ 0.31
USP40-208ENST00000450966 CEP162Q5TB80 1403 aa16.98■□□□□ 0.31
USP40-208ENST00000450966 CCER2I3L3R5 266 aa16.97■□□□□ 0.31
USP40-208ENST00000450966 KDM2AQ9Y2K7 1162 aa16.97■□□□□ 0.31
USP40-208ENST00000450966 A0A0G2JS52 829 aa16.97■□□□□ 0.31
USP40-208ENST00000450966 ZNF771Q7L3S4 317 aaPredicted RBP16.95■□□□□ 0.3
USP40-208ENST00000450966 RRP9O43818 475 aaKnown RBP16.95■□□□□ 0.3
USP40-208ENST00000450966 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
USP40-208ENST00000450966 GBP4Q96PP9 640 aa16.94■□□□□ 0.3
USP40-208ENST00000450966 HSP90AB1P08238 724 aaKnown RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms