RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 SALL2Q9Y467 1007 aaPredicted RBP12.21□□□□□ -0.46
LSM5-208ENST00000450169 TAOK2Q9UL54 1235 aa12.2□□□□□ -0.46
LSM5-208ENST00000450169 DCAF8L1A6NGE4 600 aa12.17□□□□□ -0.46
LSM5-208ENST00000450169 UBE2Q2Q8WVN8 375 aa12.17□□□□□ -0.46
LSM5-208ENST00000450169 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.15□□□□□ -0.463e-13■■■□□ 16
LSM5-208ENST00000450169 CDK11AQ9UQ88 783 aaPredicted RBP12.14□□□□□ -0.47
LSM5-208ENST00000450169 TOP2AP11388 1531 aaKnown RBP12.14□□□□□ -0.47
LSM5-208ENST00000450169 U3KPZ7 1027 aaPredicted RBP12.13□□□□□ -0.47
LSM5-208ENST00000450169 CCDC136Q96JN2 1154 aa12.12□□□□□ -0.47
LSM5-208ENST00000450169 FBXO3Q9UK99 471 aa12.12□□□□□ -0.47
LSM5-208ENST00000450169 DHX57Q6P158 1386 aaKnown RBP12.11□□□□□ -0.47
LSM5-208ENST00000450169 IFNLR1Q8IU57 520 aaPredicted RBP12.11□□□□□ -0.47
LSM5-208ENST00000450169 SPDYE4A6NLX3 237 aa12.1□□□□□ -0.47
LSM5-208ENST00000450169 VASPP50552 380 aaPredicted RBP12.1□□□□□ -0.47
LSM5-208ENST00000450169 EIF4G1Q04637 1599 aaKnown RBP12.08□□□□□ -0.48
LSM5-208ENST00000450169 SAMD1Q6SPF0 538 aaPredicted RBP12.08□□□□□ -0.48
LSM5-208ENST00000450169 TPRNQ4KMQ1 711 aa12.07□□□□□ -0.48
LSM5-208ENST00000450169 SMARCA2P51531 1590 aa12.07□□□□□ -0.48
LSM5-208ENST00000450169 PKD2Q13563 968 aa12.07□□□□□ -0.48
LSM5-208ENST00000450169 UBTFP17480 764 aaKnown RBP12.06□□□□□ -0.48
LSM5-208ENST00000450169 PEG3Q9GZU2 1588 aa12.06□□□□□ -0.48
LSM5-208ENST00000450169 NBR1Q14596 966 aa12.06□□□□□ -0.48
LSM5-208ENST00000450169 ZNF219Q9P2Y4 722 aaPredicted RBP12.06□□□□□ -0.48
LSM5-208ENST00000450169 ABCC8Q09428 1581 aa12.05□□□□□ -0.48
LSM5-208ENST00000450169 KDM2AQ9Y2K7 1162 aa12.04□□□□□ -0.48
LSM5-208ENST00000450169 CCDC88BA6NC98 1476 aa12.04□□□□□ -0.48
LSM5-208ENST00000450169 FBLN2P98095 1184 aa12.04□□□□□ -0.48
LSM5-208ENST00000450169 TRIM52Q96A61 297 aa12.04□□□□□ -0.48
LSM5-208ENST00000450169 NOP58Q9Y2X3 529 aaKnown RBP12.03□□□□□ -0.48
LSM5-208ENST00000450169 IL27Q8NEV9 243 aa12.02□□□□□ -0.49
LSM5-208ENST00000450169 SOGA1O94964 1423 aa12.01□□□□□ -0.49
LSM5-208ENST00000450169 MKRN4PQ13434 485 aaPredicted RBP12.01□□□□□ -0.49
LSM5-208ENST00000450169 VSIG10Q8N0Z9 540 aa12.01□□□□□ -0.49
LSM5-208ENST00000450169 EEA1Q15075 1411 aa12.01□□□□□ -0.49
LSM5-208ENST00000450169 GOLGA3Q08378 1498 aa12.01□□□□□ -0.49
LSM5-208ENST00000450169 ZBTB4Q9P1Z0 1013 aaPredicted RBP12□□□□□ -0.49
LSM5-208ENST00000450169 ATAD2BQ9ULI0 1458 aa11.99□□□□□ -0.49
LSM5-208ENST00000450169 CCER2I3L3R5 266 aa11.98□□□□□ -0.49
LSM5-208ENST00000450169 DDX10Q13206 875 aaKnown RBP11.97□□□□□ -0.49
LSM5-208ENST00000450169 RTL5Q5HYW3 569 aaPredicted RBP11.97□□□□□ -0.49
LSM5-208ENST00000450169 VPS8Q8N3P4 1428 aa11.96□□□□□ -0.49
LSM5-208ENST00000450169 PAK3O75914 559 aaPredicted RBP11.95□□□□□ -0.5
LSM5-208ENST00000450169 CLIP1P30622 1438 aa11.94□□□□□ -0.5
LSM5-208ENST00000450169 IRX6P78412 446 aaPredicted RBP11.94□□□□□ -0.5
LSM5-208ENST00000450169 PROM2Q8N271 834 aa11.94□□□□□ -0.5
LSM5-208ENST00000450169 BAZ1BQ9UIG0 1483 aaKnown RBP11.93□□□□□ -0.5
LSM5-208ENST00000450169 PPP1R15AO75807 674 aaPredicted RBP11.91□□□□□ -0.5
LSM5-208ENST00000450169 RUSC2Q8N2Y8 1516 aa11.91□□□□□ -0.5
LSM5-208ENST00000450169 PPP4R2Q9NY27 417 aa11.91□□□□□ -0.5
LSM5-208ENST00000450169 ANP32CO43423 234 aa11.9□□□□□ -0.5
LSM5-208ENST00000450169 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.5
LSM5-208ENST00000450169 PAXIP1Q6ZW49 1069 aaPredicted RBP11.89□□□□□ -0.51
LSM5-208ENST00000450169 CFAP44Q96MT7 982 aa11.88□□□□□ -0.51
LSM5-208ENST00000450169 CUX2O14529 1486 aa11.86□□□□□ -0.51
LSM5-208ENST00000450169 CEP164Q9UPV0 1460 aa11.85□□□□□ -0.51
LSM5-208ENST00000450169 PKNOX2Q96KN3 472 aa11.85□□□□□ -0.51
LSM5-208ENST00000450169 IPO9Q96P70 1041 aaKnown RBP11.84□□□□□ -0.51
LSM5-208ENST00000450169 ANP32AP39687 249 aaKnown RBP11.84□□□□□ -0.51
LSM5-208ENST00000450169 WASHC2AQ641Q2 1341 aa11.83□□□□□ -0.52
LSM5-208ENST00000450169 EIF5BO60841 1220 aaKnown RBP11.83□□□□□ -0.52
LSM5-208ENST00000450169 HNRNPUQ00839 825 aaKnown RBP eCLIP11.83□□□□□ -0.52
LSM5-208ENST00000450169 KIF21BO75037 1637 aa11.82□□□□□ -0.52
LSM5-208ENST00000450169 HMGXB3Q12766 1538 aa11.82□□□□□ -0.52
LSM5-208ENST00000450169 WDR97A6NE52 1622 aa11.82□□□□□ -0.52
LSM5-208ENST00000450169 C11orf95C9JLR9 678 aaPredicted RBP11.82□□□□□ -0.52
LSM5-208ENST00000450169 ZBTB47Q9UFB7 747 aaPredicted RBP11.82□□□□□ -0.52
LSM5-208ENST00000450169 NCAPD3P42695 1498 aa11.82□□□□□ -0.52
LSM5-208ENST00000450169 B4GALNT3Q6L9W6 998 aa11.81□□□□□ -0.52
LSM5-208ENST00000450169 MAPKBP1O60336 1514 aa11.81□□□□□ -0.52
LSM5-208ENST00000450169 RRBP1Q9P2E9 1410 aaKnown RBP11.79□□□□□ -0.52
LSM5-208ENST00000450169 BBXQ8WY36 941 aaPredicted RBP11.78□□□□□ -0.52
LSM5-208ENST00000450169 WASHC2CQ9Y4E1 1318 aa11.77□□□□□ -0.53
LSM5-208ENST00000450169 USP35Q9P2H5 1018 aa11.76□□□□□ -0.53
LSM5-208ENST00000450169 ECM2O94769 699 aaPredicted RBP11.75□□□□□ -0.53
LSM5-208ENST00000450169 SYNJ1O43426 1573 aa11.74□□□□□ -0.53
LSM5-208ENST00000450169 HIRIP3Q9BW71 556 aaPredicted RBP11.74□□□□□ -0.53
LSM5-208ENST00000450169 NEFMP07197 916 aa11.72□□□□□ -0.53
LSM5-208ENST00000450169 RAB3GAP2Q9H2M9 1393 aa11.72□□□□□ -0.53
LSM5-208ENST00000450169 CC2D2AQ9P2K1 1620 aa11.72□□□□□ -0.53
LSM5-208ENST00000450169 BRPF3Q9ULD4 1205 aa11.72□□□□□ -0.53
LSM5-208ENST00000450169 CCNB3Q8WWL7 1395 aa11.71□□□□□ -0.54
LSM5-208ENST00000450169 RGL2O15211 777 aa11.71□□□□□ -0.54
LSM5-208ENST00000450169 KANK4Q5T7N3 995 aaPredicted RBP11.7□□□□□ -0.54
LSM5-208ENST00000450169 KLHL34Q8N239 644 aa11.7□□□□□ -0.54
LSM5-208ENST00000450169 RSPH6AQ9H0K4 717 aa11.7□□□□□ -0.54
LSM5-208ENST00000450169 TIMELESSQ9UNS1 1208 aa11.7□□□□□ -0.54
LSM5-208ENST00000450169 RANGAP1P46060 587 aaPredicted RBP11.69□□□□□ -0.54
LSM5-208ENST00000450169 SIN3AQ96ST3 1273 aa11.68□□□□□ -0.54
LSM5-208ENST00000450169 RAPGEF2Q9Y4G8 1499 aa11.68□□□□□ -0.54
LSM5-208ENST00000450169 LAS1LQ9Y4W2 734 aaKnown RBP11.67□□□□□ -0.54
LSM5-208ENST00000450169 GLIPR1L2Q4G1C9 344 aa11.65□□□□□ -0.54
LSM5-208ENST00000450169 TRHP20396 242 aaPredicted RBP11.65□□□□□ -0.55
LSM5-208ENST00000450169 PPM1GO15355 546 aaPredicted RBP11.64□□□□□ -0.55
LSM5-208ENST00000450169 CFTRP13569 1480 aa11.64□□□□□ -0.55
LSM5-208ENST00000450169 POLA2Q14181 598 aa11.63□□□□□ -0.55
LSM5-208ENST00000450169 GSE1Q14687 1217 aa11.63□□□□□ -0.55
LSM5-208ENST00000450169 SPOCK2Q92563 424 aa11.63□□□□□ -0.55
LSM5-208ENST00000450169 TULP1O00294 542 aaPredicted RBP11.63□□□□□ -0.55
LSM5-208ENST00000450169 ARAP1Q96P48 1450 aa11.63□□□□□ -0.55
LSM5-208ENST00000450169 SPRYD3Q8NCJ5 442 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms