RNA–Protein interactions for RNA: ENST00000450169.6

LSM5-208, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM5, Length 2,258 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-208ENST00000450169 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
LSM5-208ENST00000450169 AEBP2Q6ZN18 517 aaPredicted RBP18.79■□□□□ 0.6
LSM5-208ENST00000450169 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
LSM5-208ENST00000450169 NISCHQ9Y2I1 1504 aa15.98■□□□□ 0.15
LSM5-208ENST00000450169 PLPPR3Q6T4P5 718 aa15.84■□□□□ 0.13
LSM5-208ENST00000450169 SENP3Q9H4L4 574 aaPredicted RBP15.51■□□□□ 0.07
LSM5-208ENST00000450169 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
LSM5-208ENST00000450169 ADRA2BP18089 450 aa15.14■□□□□ 0.01
LSM5-208ENST00000450169 KCNA4P22459 653 aa15.08■□□□□ 0
LSM5-208ENST00000450169 PPP6R1Q9UPN7 881 aa14.81□□□□□ -0.04
LSM5-208ENST00000450169 PELP1Q8IZL8 1130 aaKnown RBP14.73□□□□□ -0.05
LSM5-208ENST00000450169 HRCP23327 699 aa14.68□□□□□ -0.06
LSM5-208ENST00000450169 CSRNP3Q8WYN3 585 aa14.58□□□□□ -0.08
LSM5-208ENST00000450169 FOXD1Q16676 465 aa14.48□□□□□ -0.09
LSM5-208ENST00000450169 SLC4A1APQ9BWU0 796 aaKnown RBP14.4□□□□□ -0.1
LSM5-208ENST00000450169 PPARGC1BQ86YN6 1023 aaKnown RBP14.3□□□□□ -0.12
LSM5-208ENST00000450169 MYT1Q01538 1121 aa14.28□□□□□ -0.12
LSM5-208ENST00000450169 PPP4R3CPQ6ZMV5 832 aa14.18□□□□□ -0.14
LSM5-208ENST00000450169 PCGF6Q9BYE7 350 aa14.17□□□□□ -0.14
LSM5-208ENST00000450169 SCAF1Q9H7N4 1312 aaKnown RBP14.06□□□□□ -0.16
LSM5-208ENST00000450169 MYO15BQ96JP2 1530 aa13.96□□□□□ -0.17
LSM5-208ENST00000450169 ZBTB22O15209 634 aa13.96□□□□□ -0.17
LSM5-208ENST00000450169 NPM3O75607 178 aaKnown RBP13.93□□□□□ -0.18
LSM5-208ENST00000450169 NCBP3Q53F19 620 aaKnown RBP13.89□□□□□ -0.19
LSM5-208ENST00000450169 PIAS4Q8N2W9 510 aaPredicted RBP13.87□□□□□ -0.19
LSM5-208ENST00000450169 SLC24A1O60721 1099 aa13.83□□□□□ -0.2
LSM5-208ENST00000450169 SUPT5HO00267 1087 aaKnown RBP13.81□□□□□ -0.2
LSM5-208ENST00000450169 CCDC180Q9P1Z9 1646 aa13.79□□□□□ -0.2
LSM5-208ENST00000450169 DCAF1Q9Y4B6 1507 aa13.79□□□□□ -0.2
LSM5-208ENST00000450169 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
LSM5-208ENST00000450169 SHROOM4Q9ULL8 1493 aa13.72□□□□□ -0.21
LSM5-208ENST00000450169 ZEB1P37275 1124 aaPredicted RBP13.7□□□□□ -0.22
LSM5-208ENST00000450169 TRIM26Q12899 539 aaPredicted RBP13.67□□□□□ -0.22
LSM5-208ENST00000450169 ACIN1Q9UKV3 1341 aaKnown RBP13.62□□□□□ -0.23
LSM5-208ENST00000450169 NEUROD1Q13562 356 aa13.55□□□□□ -0.24
LSM5-208ENST00000450169 GTF3C3Q9Y5Q9 886 aa13.51□□□□□ -0.25
LSM5-208ENST00000450169 TTBK1Q5TCY1 1321 aaPredicted RBP13.51□□□□□ -0.25
LSM5-208ENST00000450169 ZCCHC6Q5VYS8 1495 aaKnown RBP13.48□□□□□ -0.25
LSM5-208ENST00000450169 CNKSR2Q8WXI2 1034 aa13.46□□□□□ -0.25
LSM5-208ENST00000450169 AMER1Q5JTC6 1135 aaPredicted RBP13.43□□□□□ -0.26
LSM5-208ENST00000450169 CENPBP07199 599 aaPredicted RBP13.43□□□□□ -0.26
LSM5-208ENST00000450169 LOC105371045A0A1W2PR82 267 aa13.42□□□□□ -0.26
LSM5-208ENST00000450169 FOXD4L1Q9NU39 408 aa13.41□□□□□ -0.26
LSM5-208ENST00000450169 BCL11AQ9H165 835 aa13.24□□□□□ -0.29
LSM5-208ENST00000450169 MAPK8IP2Q13387 824 aaPredicted RBP13.23□□□□□ -0.29
LSM5-208ENST00000450169 DIEXFQ68CQ4 756 aaKnown RBP13.2□□□□□ -0.3
LSM5-208ENST00000450169 DCAF8L2P0C7V8 631 aa13.19□□□□□ -0.3
LSM5-208ENST00000450169 FAM9AQ8IZU1 332 aaPredicted RBP13.12□□□□□ -0.31
LSM5-208ENST00000450169 FKBP8Q14318 412 aa13.11□□□□□ -0.31
LSM5-208ENST00000450169 ANP32EQ9BTT0 268 aa13.04□□□□□ -0.32
LSM5-208ENST00000450169 DNAJC5BQ9UF47 199 aa13.03□□□□□ -0.32
LSM5-208ENST00000450169 CCER1Q8TC90 406 aaPredicted RBP13.02□□□□□ -0.33
LSM5-208ENST00000450169 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.01□□□□□ -0.33
LSM5-208ENST00000450169 YTHDC1Q96MU7 727 aaKnown RBP12.99□□□□□ -0.33
LSM5-208ENST00000450169 TRIM41Q8WV44 630 aa12.98□□□□□ -0.33
LSM5-208ENST00000450169 ABCC9O60706 1549 aa12.97□□□□□ -0.33
LSM5-208ENST00000450169 SLC4A2P04920 1241 aa12.97□□□□□ -0.33
LSM5-208ENST00000450169 PRKCSHP14314 528 aaPredicted RBP12.96□□□□□ -0.34
LSM5-208ENST00000450169 RNF216Q9NWF9 866 aaPredicted RBP12.95□□□□□ -0.34
LSM5-208ENST00000450169 ZNF316A6NFI3 1004 aaPredicted RBP12.87□□□□□ -0.35
LSM5-208ENST00000450169 CLSPNQ9HAW4 1339 aa12.84□□□□□ -0.35
LSM5-208ENST00000450169 TSHZ2Q9NRE2 1034 aa12.83□□□□□ -0.36
LSM5-208ENST00000450169 SCRIBQ14160 1630 aa12.83□□□□□ -0.36
LSM5-208ENST00000450169 MIER1Q8N108 512 aa12.81□□□□□ -0.36
LSM5-208ENST00000450169 SUPT16HQ9Y5B9 1047 aaKnown RBP12.79□□□□□ -0.36
LSM5-208ENST00000450169 NACADO15069 1562 aa12.78□□□□□ -0.36
LSM5-208ENST00000450169 MSH5O43196 834 aa12.73□□□□□ -0.37
LSM5-208ENST00000450169 ERICH6Q7L0X2 663 aa12.73□□□□□ -0.37
LSM5-208ENST00000450169 MYCNP04198 464 aaPredicted RBP12.7□□□□□ -0.38
LSM5-208ENST00000450169 ATXN8OSP0DMR3 200 aa12.69□□□□□ -0.38
LSM5-208ENST00000450169 HOXD11P31277 338 aaPredicted RBP12.67□□□□□ -0.38
LSM5-208ENST00000450169 RB1CC1Q8TDY2 1594 aa12.64□□□□□ -0.39
LSM5-208ENST00000450169 ATF5Q9Y2D1 282 aaPredicted RBP12.59□□□□□ -0.39
LSM5-208ENST00000450169 DMRT2Q9Y5R5 561 aa12.57□□□□□ -0.4
LSM5-208ENST00000450169 APLP2Q06481 763 aa12.56□□□□□ -0.4
LSM5-208ENST00000450169 UNC13AQ9UPW8 1703 aa12.52□□□□□ -0.41
LSM5-208ENST00000450169 RSF1Q96T23 1441 aaPredicted RBP12.5□□□□□ -0.41
LSM5-208ENST00000450169 RBM19Q9Y4C8 960 aaKnown RBP12.49□□□□□ -0.41
LSM5-208ENST00000450169 WRNQ14191 1432 aaPredicted RBP eCLIP12.49□□□□□ -0.41
LSM5-208ENST00000450169 CECR2Q9BXF3 1484 aa12.47□□□□□ -0.41
LSM5-208ENST00000450169 PLCB2Q00722 1185 aa12.46□□□□□ -0.41
LSM5-208ENST00000450169 BCANQ96GW7 911 aa12.43□□□□□ -0.42
LSM5-208ENST00000450169 MROH2BQ7Z745 1585 aa12.4□□□□□ -0.42
LSM5-208ENST00000450169 MYT1LQ9UL68 1186 aa12.38□□□□□ -0.43
LSM5-208ENST00000450169 HAP1P54257 671 aaPredicted RBP12.37□□□□□ -0.43
LSM5-208ENST00000450169 ANO8Q9HCE9 1232 aaPredicted RBP12.35□□□□□ -0.43
LSM5-208ENST00000450169 BICRAQ9NZM4 1560 aa12.34□□□□□ -0.43
LSM5-208ENST00000450169 WIZO95785 1651 aa12.34□□□□□ -0.43
LSM5-208ENST00000450169 CEP162Q5TB80 1403 aa12.32□□□□□ -0.44
LSM5-208ENST00000450169 FANCIQ9NVI1 1328 aa12.32□□□□□ -0.44
LSM5-208ENST00000450169 DEKP35659 375 aaKnown RBP12.31□□□□□ -0.44
LSM5-208ENST00000450169 BAZ1AQ9NRL2 1556 aaPredicted RBP12.3□□□□□ -0.44
LSM5-208ENST00000450169 PABPN1Q86U42 306 aaKnown RBP eCLIP12.29□□□□□ -0.44
LSM5-208ENST00000450169 NEFLP07196 543 aa12.28□□□□□ -0.44
LSM5-208ENST00000450169 HNRNPUL2Q1KMD3 747 aaKnown RBP12.28□□□□□ -0.44
LSM5-208ENST00000450169 SMARCA4P51532 1647 aa12.26□□□□□ -0.45
LSM5-208ENST00000450169 ITGAEP38570 1179 aa12.25□□□□□ -0.45
LSM5-208ENST00000450169 ERICH6BQ5W0A0 696 aa12.23□□□□□ -0.45
LSM5-208ENST00000450169 KCNH8Q96L42 1107 aa12.22□□□□□ -0.45
LSM5-208ENST00000450169 TNIKQ9UKE5 1360 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 288.4 ms