RNA–Protein interactions for RNA: ENST00000448416.6

SYNPO2-204, Transcript of synaptopodin 2, humanhuman

TSL 2 BASIC

Gene SYNPO2, Length 4,298 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-204ENST00000448416 SMARCA2P51531 1590 aa13.02□□□□□ -0.32
SYNPO2-204ENST00000448416 BAZ1BQ9UIG0 1483 aaKnown RBP13.02□□□□□ -0.33
SYNPO2-204ENST00000448416 WDR97A6NE52 1622 aa13.02□□□□□ -0.33
SYNPO2-204ENST00000448416 CUX2O14529 1486 aa13.01□□□□□ -0.33
SYNPO2-204ENST00000448416 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.01□□□□□ -0.33
SYNPO2-204ENST00000448416 RRBP1Q9P2E9 1410 aaKnown RBP13□□□□□ -0.33
SYNPO2-204ENST00000448416 UBE2Q2Q8WVN8 375 aa13□□□□□ -0.33
SYNPO2-204ENST00000448416 B4GALNT3Q6L9W6 998 aa12.99□□□□□ -0.33
SYNPO2-204ENST00000448416 SIN3AQ96ST3 1273 aa12.99□□□□□ -0.33
SYNPO2-204ENST00000448416 RAPGEF2Q9Y4G8 1499 aa12.99□□□□□ -0.33
SYNPO2-204ENST00000448416 RAB3GAP2Q9H2M9 1393 aa12.98□□□□□ -0.33
SYNPO2-204ENST00000448416 CCNB3Q8WWL7 1395 aa12.98□□□□□ -0.33
SYNPO2-204ENST00000448416 MAPKBP1O60336 1514 aa12.98□□□□□ -0.33
SYNPO2-204ENST00000448416 ANP32AP39687 249 aaKnown RBP12.95□□□□□ -0.34
SYNPO2-204ENST00000448416 ZBTB47Q9UFB7 747 aaPredicted RBP12.95□□□□□ -0.34
SYNPO2-204ENST00000448416 IPO9Q96P70 1041 aaKnown RBP12.93□□□□□ -0.34
SYNPO2-204ENST00000448416 TIMELESSQ9UNS1 1208 aa12.92□□□□□ -0.34
SYNPO2-204ENST00000448416 SETD5Q9C0A6 1442 aa12.88□□□□□ -0.35
SYNPO2-204ENST00000448416 ARAP1Q96P48 1450 aa12.88□□□□□ -0.35
SYNPO2-204ENST00000448416 SYNJ1O43426 1573 aa12.87□□□□□ -0.35
SYNPO2-204ENST00000448416 EIF5BO60841 1220 aaKnown RBP12.85□□□□□ -0.35
SYNPO2-204ENST00000448416 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
SYNPO2-204ENST00000448416 WASHC2AQ641Q2 1341 aa12.83□□□□□ -0.35
SYNPO2-204ENST00000448416 NEFMP07197 916 aa12.81□□□□□ -0.36
SYNPO2-204ENST00000448416 TONSLQ96HA7 1378 aa12.79□□□□□ -0.36
SYNPO2-204ENST00000448416 FAM9BQ8IZU0 186 aa12.79□□□□□ -0.36
SYNPO2-204ENST00000448416 C11orf95C9JLR9 678 aaPredicted RBP12.79□□□□□ -0.36
SYNPO2-204ENST00000448416 USP35Q9P2H5 1018 aa12.79□□□□□ -0.36
SYNPO2-204ENST00000448416 FAM50AQ14320 339 aaKnown RBP12.78□□□□□ -0.36
SYNPO2-204ENST00000448416 LAS1LQ9Y4W2 734 aaKnown RBP12.78□□□□□ -0.36
SYNPO2-204ENST00000448416 NPM2Q86SE8 214 aaKnown RBP12.76□□□□□ -0.37
SYNPO2-204ENST00000448416 CCDC184Q52MB2 194 aa12.76□□□□□ -0.37
SYNPO2-204ENST00000448416 ZBED9Q6R2W3 1325 aa12.75□□□□□ -0.37
SYNPO2-204ENST00000448416 WASHC2CQ9Y4E1 1318 aa12.75□□□□□ -0.37
SYNPO2-204ENST00000448416 BRPF3Q9ULD4 1205 aa12.74□□□□□ -0.37
SYNPO2-204ENST00000448416 ERICH3Q5RHP9 1530 aa12.73□□□□□ -0.37
SYNPO2-204ENST00000448416 MRS2Q9HD23 443 aa12.73□□□□□ -0.37
SYNPO2-204ENST00000448416 PPM1GO15355 546 aaPredicted RBP12.72□□□□□ -0.37
SYNPO2-204ENST00000448416 PRXQ9BXM0 1461 aa12.7□□□□□ -0.38
SYNPO2-204ENST00000448416 PKNOX2Q96KN3 472 aa12.68□□□□□ -0.38
SYNPO2-204ENST00000448416 AKNAQ7Z591 1439 aa12.67□□□□□ -0.38
SYNPO2-204ENST00000448416 GSE1Q14687 1217 aa12.67□□□□□ -0.38
SYNPO2-204ENST00000448416 FHAD1B1AJZ9 1412 aa12.67□□□□□ -0.38
SYNPO2-204ENST00000448416 PRKRIP1Q9H875 184 aaPredicted RBP12.67□□□□□ -0.38
SYNPO2-204ENST00000448416 PHLDB1Q86UU1 1377 aa12.66□□□□□ -0.38
SYNPO2-204ENST00000448416 ARHGAP35Q9NRY4 1499 aa12.66□□□□□ -0.38
SYNPO2-204ENST00000448416 HSPA5P11021 654 aaKnown RBP12.66□□□□□ -0.38
SYNPO2-204ENST00000448416 RSPH6AQ9H0K4 717 aa12.64□□□□□ -0.39
SYNPO2-204ENST00000448416 CNTLNQ9NXG0 1405 aa12.64□□□□□ -0.39
SYNPO2-204ENST00000448416 NUDCQ9Y266 331 aa12.63□□□□□ -0.39
SYNPO2-204ENST00000448416 TIAM1Q13009 1591 aa12.63□□□□□ -0.39
SYNPO2-204ENST00000448416 SMG6Q86US8 1419 aaKnown RBP12.63□□□□□ -0.39
SYNPO2-204ENST00000448416 NCAPD3P42695 1498 aa12.62□□□□□ -0.39
SYNPO2-204ENST00000448416 PDE4AP27815 886 aa12.62□□□□□ -0.39
SYNPO2-204ENST00000448416 EIF4G2P78344 907 aaKnown RBP eCLIP12.62□□□□□ -0.39
SYNPO2-204ENST00000448416 TCERG1O14776 1098 aaKnown RBP12.61□□□□□ -0.39
SYNPO2-204ENST00000448416 LRRC9Q6ZRR7 1453 aa12.61□□□□□ -0.39
SYNPO2-204ENST00000448416 RNF123Q5XPI4 1314 aa12.6□□□□□ -0.39
SYNPO2-204ENST00000448416 PEG3Q9GZU2 1588 aa12.6□□□□□ -0.39
SYNPO2-204ENST00000448416 TOP2BQ02880 1626 aa12.6□□□□□ -0.39
SYNPO2-204ENST00000448416 MAP3K1Q13233 1512 aa12.59□□□□□ -0.39
SYNPO2-204ENST00000448416 FRAT1Q92837 279 aaPredicted RBP12.59□□□□□ -0.39
SYNPO2-204ENST00000448416 NCOA2Q15596 1464 aa12.58□□□□□ -0.4
SYNPO2-204ENST00000448416 NFKBIBQ15653 356 aa12.57□□□□□ -0.4
SYNPO2-204ENST00000448416 BACH2Q9BYV9 841 aa12.57□□□□□ -0.4
SYNPO2-204ENST00000448416 GLIPR1L2Q4G1C9 344 aa12.57□□□□□ -0.4
SYNPO2-204ENST00000448416 ATP1B4Q9UN42 357 aaPredicted RBP12.57□□□□□ -0.4
SYNPO2-204ENST00000448416 DDRGK1Q96HY6 314 aa12.57□□□□□ -0.4
SYNPO2-204ENST00000448416 FAM43AQ8N2R8 423 aa12.55□□□□□ -0.4
SYNPO2-204ENST00000448416 CCDC18Q5T9S5 1454 aa12.54□□□□□ -0.4
SYNPO2-204ENST00000448416 UACAQ9BZF9 1416 aa12.54□□□□□ -0.4
SYNPO2-204ENST00000448416 CCDC7Q96M83 1385 aa12.54□□□□□ -0.4
SYNPO2-204ENST00000448416 DAXXQ9UER7 740 aaPredicted RBP12.54□□□□□ -0.4
SYNPO2-204ENST00000448416 KIF27Q86VH2 1401 aa12.53□□□□□ -0.4
SYNPO2-204ENST00000448416 SENP3-EIF4A1A0A087X0R7 540 aa12.53□□□□□ -0.4
SYNPO2-204ENST00000448416 MS4A1P11836 297 aa12.53□□□□□ -0.4
SYNPO2-204ENST00000448416 CNGB1Q14028 1251 aaPredicted RBP12.53□□□□□ -0.4
SYNPO2-204ENST00000448416 EXOC6Q8TAG9 804 aa12.51□□□□□ -0.41
SYNPO2-204ENST00000448416 KDM5BQ9UGL1 1544 aa12.51□□□□□ -0.41
SYNPO2-204ENST00000448416 BIVM-ERCC5R4GMW8 1640 aa12.5□□□□□ -0.41
SYNPO2-204ENST00000448416 NCOA1Q15788 1441 aa12.49□□□□□ -0.41
SYNPO2-204ENST00000448416 SLC4A3P48751 1232 aa12.49□□□□□ -0.41
SYNPO2-204ENST00000448416 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.49□□□□□ -0.41
SYNPO2-204ENST00000448416 VSIG10Q8N0Z9 540 aa12.48□□□□□ -0.41
SYNPO2-204ENST00000448416 RRP1P56182 461 aaKnown RBP12.47□□□□□ -0.41
SYNPO2-204ENST00000448416 ZMYND15Q9H091 742 aa12.46□□□□□ -0.41
SYNPO2-204ENST00000448416 P3H3Q8IVL6 736 aa12.46□□□□□ -0.42
SYNPO2-204ENST00000448416 DCAF11Q8TEB1 546 aa12.46□□□□□ -0.42
SYNPO2-204ENST00000448416 HFM1A2PYH4 1435 aa12.45□□□□□ -0.42
SYNPO2-204ENST00000448416 KIF7Q2M1P5 1343 aa12.44□□□□□ -0.42
SYNPO2-204ENST00000448416 FRAT2O75474 233 aaPredicted RBP12.43□□□□□ -0.42
SYNPO2-204ENST00000448416 AQRO60306 1485 aaKnown RBP eCLIP12.43□□□□□ -0.42
SYNPO2-204ENST00000448416 PTPN23Q9H3S7 1636 aa12.42□□□□□ -0.42
SYNPO2-204ENST00000448416 CFAP43Q8NDM7 1665 aa12.42□□□□□ -0.42
SYNPO2-204ENST00000448416 L3MBTL2Q969R5 705 aa12.42□□□□□ -0.42
SYNPO2-204ENST00000448416 FMN1Q68DA7 1419 aa12.42□□□□□ -0.42
SYNPO2-204ENST00000448416 POLR3GLQ9BT43 218 aa12.42□□□□□ -0.42
SYNPO2-204ENST00000448416 FGD6Q6ZV73 1430 aa12.41□□□□□ -0.42
SYNPO2-204ENST00000448416 TMC1Q8TDI8 760 aa12.41□□□□□ -0.42
SYNPO2-204ENST00000448416 RCAN3Q9UKA8 241 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms