RNA–Protein interactions for RNA: ENST00000448416.6

SYNPO2-204, Transcript of synaptopodin 2, humanhuman

TSL 2 BASIC

Gene SYNPO2, Length 4,298 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO2-204ENST00000448416 NISCHQ9Y2I1 1504 aa17.07■□□□□ 0.32
SYNPO2-204ENST00000448416 HRCP23327 699 aa16■□□□□ 0.15
SYNPO2-204ENST00000448416 PELP1Q8IZL8 1130 aaKnown RBP15.81■□□□□ 0.12
SYNPO2-204ENST00000448416 PPARGC1BQ86YN6 1023 aaKnown RBP15.65■□□□□ 0.1
SYNPO2-204ENST00000448416 PCGF6Q9BYE7 350 aa15.6■□□□□ 0.09
SYNPO2-204ENST00000448416 SUPT5HO00267 1087 aaKnown RBP15.43■□□□□ 0.06
SYNPO2-204ENST00000448416 SHROOM4Q9ULL8 1493 aa15.37■□□□□ 0.05
SYNPO2-204ENST00000448416 MYO15BQ96JP2 1530 aa15.31■□□□□ 0.04
SYNPO2-204ENST00000448416 MYT1Q01538 1121 aa15.27■□□□□ 0.04
SYNPO2-204ENST00000448416 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
SYNPO2-204ENST00000448416 CHIC1Q5VXU3 224 aa15.22■□□□□ 0.03
SYNPO2-204ENST00000448416 DCAF1Q9Y4B6 1507 aa15.08■□□□□ 0
SYNPO2-204ENST00000448416 TRIM26Q12899 539 aaPredicted RBP15.04■□□□□ -0
SYNPO2-204ENST00000448416 ZEB1P37275 1124 aaPredicted RBP15.02□□□□□ -0.01
SYNPO2-204ENST00000448416 CCDC180Q9P1Z9 1646 aa14.92□□□□□ -0.02
SYNPO2-204ENST00000448416 LOC105371045A0A1W2PR82 267 aa14.91□□□□□ -0.02
SYNPO2-204ENST00000448416 ACIN1Q9UKV3 1341 aaKnown RBP14.84□□□□□ -0.03
SYNPO2-204ENST00000448416 NEUROD1Q13562 356 aa14.77□□□□□ -0.05
SYNPO2-204ENST00000448416 GTF3C3Q9Y5Q9 886 aa14.74□□□□□ -0.05
SYNPO2-204ENST00000448416 CENPBP07199 599 aaPredicted RBP14.67□□□□□ -0.06
SYNPO2-204ENST00000448416 ZCCHC6Q5VYS8 1495 aaKnown RBP14.54□□□□□ -0.08
SYNPO2-204ENST00000448416 DIEXFQ68CQ4 756 aaKnown RBP14.49□□□□□ -0.09
SYNPO2-204ENST00000448416 CCER1Q8TC90 406 aaPredicted RBP14.39□□□□□ -0.11
SYNPO2-204ENST00000448416 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.38□□□□□ -0.11
SYNPO2-204ENST00000448416 TTBK1Q5TCY1 1321 aaPredicted RBP14.36□□□□□ -0.11
SYNPO2-204ENST00000448416 DCAF8L2P0C7V8 631 aa14.34□□□□□ -0.11
SYNPO2-204ENST00000448416 YTHDC1Q96MU7 727 aaKnown RBP14.29□□□□□ -0.12
SYNPO2-204ENST00000448416 FAM9AQ8IZU1 332 aaPredicted RBP14.28□□□□□ -0.12
SYNPO2-204ENST00000448416 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
SYNPO2-204ENST00000448416 EHMT2Q96KQ7 1210 aa14.24□□□□□ -0.13
SYNPO2-204ENST00000448416 BCL11AQ9H165 835 aa14.21□□□□□ -0.13
SYNPO2-204ENST00000448416 ZNF316A6NFI3 1004 aaPredicted RBP14.15□□□□□ -0.14
SYNPO2-204ENST00000448416 ANP32EQ9BTT0 268 aa14.11□□□□□ -0.15
SYNPO2-204ENST00000448416 MIER1Q8N108 512 aa14.07□□□□□ -0.16
SYNPO2-204ENST00000448416 SUPT16HQ9Y5B9 1047 aaKnown RBP13.95□□□□□ -0.18
SYNPO2-204ENST00000448416 TSHZ2Q9NRE2 1034 aa13.95□□□□□ -0.18
SYNPO2-204ENST00000448416 CSRNP3Q8WYN3 585 aa13.95□□□□□ -0.18
SYNPO2-204ENST00000448416 CLSPNQ9HAW4 1339 aa13.94□□□□□ -0.18
SYNPO2-204ENST00000448416 ABCC9O60706 1549 aa13.85□□□□□ -0.19
SYNPO2-204ENST00000448416 RSF1Q96T23 1441 aaPredicted RBP13.84□□□□□ -0.19
SYNPO2-204ENST00000448416 RB1CC1Q8TDY2 1594 aa13.8□□□□□ -0.2
SYNPO2-204ENST00000448416 PRKCSHP14314 528 aaPredicted RBP13.75□□□□□ -0.21
SYNPO2-204ENST00000448416 WRNQ14191 1432 aaPredicted RBP eCLIP13.73□□□□□ -0.21
SYNPO2-204ENST00000448416 HNRNPUL2Q1KMD3 747 aaKnown RBP13.67□□□□□ -0.22
SYNPO2-204ENST00000448416 BCANQ96GW7 911 aa13.67□□□□□ -0.22
SYNPO2-204ENST00000448416 CEP162Q5TB80 1403 aa13.64□□□□□ -0.23
SYNPO2-204ENST00000448416 RBM19Q9Y4C8 960 aaKnown RBP13.62□□□□□ -0.23
SYNPO2-204ENST00000448416 FKBP8Q14318 412 aa13.58□□□□□ -0.24
SYNPO2-204ENST00000448416 TNIKQ9UKE5 1360 aa13.53□□□□□ -0.24
SYNPO2-204ENST00000448416 ERICH6Q7L0X2 663 aa13.53□□□□□ -0.24
SYNPO2-204ENST00000448416 UBTFP17480 764 aaKnown RBP13.52□□□□□ -0.25
SYNPO2-204ENST00000448416 NEFLP07196 543 aa13.5□□□□□ -0.25
SYNPO2-204ENST00000448416 SCRIBQ14160 1630 aa13.49□□□□□ -0.25
SYNPO2-204ENST00000448416 MSH5O43196 834 aa13.48□□□□□ -0.25
SYNPO2-204ENST00000448416 KCNH8Q96L42 1107 aa13.46□□□□□ -0.25
SYNPO2-204ENST00000448416 ITGAEP38570 1179 aa13.44□□□□□ -0.26
SYNPO2-204ENST00000448416 CCDC88BA6NC98 1476 aa13.4□□□□□ -0.27
SYNPO2-204ENST00000448416 MYT1LQ9UL68 1186 aa13.39□□□□□ -0.27
SYNPO2-204ENST00000448416 APLP2Q06481 763 aa13.38□□□□□ -0.27
SYNPO2-204ENST00000448416 SOGA1O94964 1423 aa13.38□□□□□ -0.27
SYNPO2-204ENST00000448416 ABCC8Q09428 1581 aa13.38□□□□□ -0.27
SYNPO2-204ENST00000448416 FANCIQ9NVI1 1328 aa13.37□□□□□ -0.27
SYNPO2-204ENST00000448416 CECR2Q9BXF3 1484 aa13.36□□□□□ -0.27
SYNPO2-204ENST00000448416 MROH2BQ7Z745 1585 aa13.36□□□□□ -0.27
SYNPO2-204ENST00000448416 DEKP35659 375 aaKnown RBP13.36□□□□□ -0.27
SYNPO2-204ENST00000448416 DHX57Q6P158 1386 aaKnown RBP13.35□□□□□ -0.27
SYNPO2-204ENST00000448416 WIZO95785 1651 aa13.33□□□□□ -0.28
SYNPO2-204ENST00000448416 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
SYNPO2-204ENST00000448416 EEA1Q15075 1411 aa13.32□□□□□ -0.28
SYNPO2-204ENST00000448416 GOLGA3Q08378 1498 aa13.32□□□□□ -0.28
SYNPO2-204ENST00000448416 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
SYNPO2-204ENST00000448416 CDK11AQ9UQ88 783 aaPredicted RBP13.31□□□□□ -0.28
SYNPO2-204ENST00000448416 TRIM52Q96A61 297 aa13.28□□□□□ -0.28
SYNPO2-204ENST00000448416 RUSC2Q8N2Y8 1516 aa13.28□□□□□ -0.28
SYNPO2-204ENST00000448416 DDX10Q13206 875 aaKnown RBP13.26□□□□□ -0.29
SYNPO2-204ENST00000448416 CLIP1P30622 1438 aa13.25□□□□□ -0.29
SYNPO2-204ENST00000448416 VPS8Q8N3P4 1428 aa13.24□□□□□ -0.29
SYNPO2-204ENST00000448416 BAZ1AQ9NRL2 1556 aaPredicted RBP13.22□□□□□ -0.29
SYNPO2-204ENST00000448416 RANGAP1P46060 587 aaPredicted RBP13.18□□□□□ -0.3
SYNPO2-204ENST00000448416 SALL2Q9Y467 1007 aaPredicted RBP13.17□□□□□ -0.3
SYNPO2-204ENST00000448416 NBR1Q14596 966 aa13.17□□□□□ -0.3
SYNPO2-204ENST00000448416 ERICH6BQ5W0A0 696 aa13.17□□□□□ -0.3
SYNPO2-204ENST00000448416 CCER2I3L3R5 266 aa13.16□□□□□ -0.3
SYNPO2-204ENST00000448416 IRX6P78412 446 aaPredicted RBP13.16□□□□□ -0.3
SYNPO2-204ENST00000448416 CEP164Q9UPV0 1460 aa13.16□□□□□ -0.3
SYNPO2-204ENST00000448416 ANP32CO43423 234 aa13.16□□□□□ -0.3
SYNPO2-204ENST00000448416 PPP1R15AO75807 674 aaPredicted RBP13.11□□□□□ -0.31
SYNPO2-204ENST00000448416 NOP58Q9Y2X3 529 aaKnown RBP13.11□□□□□ -0.31
SYNPO2-204ENST00000448416 CCDC136Q96JN2 1154 aa13.1□□□□□ -0.31
SYNPO2-204ENST00000448416 NACADO15069 1562 aa13.1□□□□□ -0.31
SYNPO2-204ENST00000448416 KIF21BO75037 1637 aa13.07□□□□□ -0.32
SYNPO2-204ENST00000448416 RTL5Q5HYW3 569 aaPredicted RBP13.07□□□□□ -0.32
SYNPO2-204ENST00000448416 PPP4R2Q9NY27 417 aa13.06□□□□□ -0.32
SYNPO2-204ENST00000448416 HNRNPUQ00839 825 aaKnown RBP eCLIP13.06□□□□□ -0.32
SYNPO2-204ENST00000448416 HIRIP3Q9BW71 556 aaPredicted RBP13.06□□□□□ -0.32
SYNPO2-204ENST00000448416 PAK3O75914 559 aaPredicted RBP13.05□□□□□ -0.32
SYNPO2-204ENST00000448416 TOP2AP11388 1531 aaKnown RBP13.05□□□□□ -0.32
SYNPO2-204ENST00000448416 KANK4Q5T7N3 995 aaPredicted RBP13.04□□□□□ -0.32
SYNPO2-204ENST00000448416 RTN4Q9NQC3 1192 aaKnown RBP13.03□□□□□ -0.32
SYNPO2-204ENST00000448416 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms