RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 DIP2BQ9P265 1576 aa18■□□□□ 0.47
SMPD4-208ENST00000439029 FHAD1B1AJZ9 1412 aa18■□□□□ 0.47
SMPD4-208ENST00000439029 TSPOAP1O95153 1857 aa18■□□□□ 0.47
SMPD4-208ENST00000439029 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.465e-6■■■■■ 34.5
SMPD4-208ENST00000439029 MAPKBP1O60336 1514 aa17.94■□□□□ 0.46
SMPD4-208ENST00000439029 ADCY10Q96PN6 1610 aa17.91■□□□□ 0.46
SMPD4-208ENST00000439029 ADGRL1O94910 1474 aa17.88■□□□□ 0.45
SMPD4-208ENST00000439029 TTBK1Q5TCY1 1321 aaPredicted RBP17.86■□□□□ 0.45
SMPD4-208ENST00000439029 HECW2Q9P2P5 1572 aa17.84■□□□□ 0.45
SMPD4-208ENST00000439029 ERICH3Q5RHP9 1530 aa17.84■□□□□ 0.45
SMPD4-208ENST00000439029 RUSC2Q8N2Y8 1516 aa17.82■□□□□ 0.44
SMPD4-208ENST00000439029 TOP2BQ02880 1626 aa17.77■□□□□ 0.44
SMPD4-208ENST00000439029 BIVM-ERCC5R4GMW8 1640 aa17.76■□□□□ 0.43
SMPD4-208ENST00000439029 COL17A1Q9UMD9 1497 aaPredicted RBP17.73■□□□□ 0.43
SMPD4-208ENST00000439029 PPRC1Q5VV67 1664 aaKnown RBP17.71■□□□□ 0.43
SMPD4-208ENST00000439029 PTPRGP23470 1445 aa17.7■□□□□ 0.42
SMPD4-208ENST00000439029 ASXL2Q76L83 1435 aa17.69■□□□□ 0.42
SMPD4-208ENST00000439029 FBXO41Q8TF61 875 aa17.68■□□□□ 0.42
SMPD4-208ENST00000439029 KIAA0586Q9BVV6 1533 aa17.67■□□□□ 0.42
SMPD4-208ENST00000439029 SUPT5HO00267 1087 aaKnown RBP17.66■□□□□ 0.42
SMPD4-208ENST00000439029 ABCC2Q92887 1545 aa17.63■□□□□ 0.41
SMPD4-208ENST00000439029 PLB1Q6P1J6 1458 aa17.63■□□□□ 0.41
SMPD4-208ENST00000439029 GLI2P10070 1586 aa17.62■□□□□ 0.41
SMPD4-208ENST00000439029 CUL7Q14999 1698 aa17.59■□□□□ 0.41
SMPD4-208ENST00000439029 TNIKQ9UKE5 1360 aa17.58■□□□□ 0.4
SMPD4-208ENST00000439029 IGF1RP08069 1367 aa17.56■□□□□ 0.4
SMPD4-208ENST00000439029 EPRSP07814 1512 aaKnown RBP17.56■□□□□ 0.4
SMPD4-208ENST00000439029 MAP3K4Q9Y6R4 1608 aa17.53■□□□□ 0.4
SMPD4-208ENST00000439029 TEX14Q8IWB6 1497 aa17.52■□□□□ 0.4
SMPD4-208ENST00000439029 CARMIL2Q6F5E8 1435 aa17.52■□□□□ 0.4
SMPD4-208ENST00000439029 UACAQ9BZF9 1416 aa17.51■□□□□ 0.39
SMPD4-208ENST00000439029 UHRF1BP1LA0JNW5 1464 aa17.49■□□□□ 0.39
SMPD4-208ENST00000439029 KIF27Q86VH2 1401 aa17.45■□□□□ 0.38
SMPD4-208ENST00000439029 LMTK3Q96Q04 1460 aa17.44■□□□□ 0.38
SMPD4-208ENST00000439029 ZCCHC11Q5TAX3 1644 aaKnown RBP17.43■□□□□ 0.38
SMPD4-208ENST00000439029 KDM5BQ9UGL1 1544 aa17.43■□□□□ 0.38
SMPD4-208ENST00000439029 KIF21BO75037 1637 aa17.43■□□□□ 0.38
SMPD4-208ENST00000439029 CARMIL1Q5VZK9 1371 aa17.42■□□□□ 0.38
SMPD4-208ENST00000439029 KCNH8Q96L42 1107 aa17.41■□□□□ 0.38
SMPD4-208ENST00000439029 DISP1Q96F81 1524 aa17.41■□□□□ 0.38
SMPD4-208ENST00000439029 IQGAP2Q13576 1575 aa17.4■□□□□ 0.38
SMPD4-208ENST00000439029 WDR7Q9Y4E6 1490 aa17.37■□□□□ 0.37
SMPD4-208ENST00000439029 CD109Q6YHK3 1445 aa17.37■□□□□ 0.37
SMPD4-208ENST00000439029 PTPRMP28827 1452 aa17.34■□□□□ 0.37
SMPD4-208ENST00000439029 ILDR2Q71H61 639 aa17.33■□□□□ 0.36
SMPD4-208ENST00000439029 MAGI3Q5TCQ9 1506 aa17.31■□□□□ 0.36
SMPD4-208ENST00000439029 HSPA2P54652 639 aa17.28■□□□□ 0.36
SMPD4-208ENST00000439029 PLPPR3Q6T4P5 718 aa17.28■□□□□ 0.36
SMPD4-208ENST00000439029 CFAP43Q8NDM7 1665 aa17.27■□□□□ 0.36
SMPD4-208ENST00000439029 KIAA0556O60303 1618 aa17.27■□□□□ 0.36
SMPD4-208ENST00000439029 DISP3Q9P2K9 1392 aa17.27■□□□□ 0.35
SMPD4-208ENST00000439029 ADAMTSL3P82987 1691 aa17.26■□□□□ 0.35
SMPD4-208ENST00000439029 ARID3CA6NKF2 412 aa17.26■□□□□ 0.35
SMPD4-208ENST00000439029 UGGT2Q9NYU1 1516 aa17.26■□□□□ 0.35
SMPD4-208ENST00000439029 ARID4BQ4LE39 1312 aaPredicted RBP17.25■□□□□ 0.35
SMPD4-208ENST00000439029 PCF11O94913 1555 aaKnown RBP17.25■□□□□ 0.35
SMPD4-208ENST00000439029 SOCS7O14512 581 aa17.24■□□□□ 0.35
SMPD4-208ENST00000439029 RAPGEF3O95398 923 aa17.23■□□□□ 0.35
SMPD4-208ENST00000439029 CERKQ8TCT0 537 aa17.22■□□□□ 0.35
SMPD4-208ENST00000439029 MADDQ8WXG6 1647 aa17.21■□□□□ 0.35
SMPD4-208ENST00000439029 ARAP3Q8WWN8 1544 aa17.2■□□□□ 0.34
SMPD4-208ENST00000439029 RAPGEF2Q9Y4G8 1499 aa17.16■□□□□ 0.34
SMPD4-208ENST00000439029 BCORL1Q5H9F3 1711 aa17.16■□□□□ 0.34
SMPD4-208ENST00000439029 ABCA8O94911 1581 aa17.15■□□□□ 0.34
SMPD4-208ENST00000439029 RIMS1Q86UR5 1692 aaKnown RBP17.13■□□□□ 0.33
SMPD4-208ENST00000439029 P3H3Q8IVL6 736 aa17.07■□□□□ 0.32
SMPD4-208ENST00000439029 FRMPD1Q5SYB0 1578 aa17.06■□□□□ 0.32
SMPD4-208ENST00000439029 GOLGA3Q08378 1498 aa17.05■□□□□ 0.32
SMPD4-208ENST00000439029 PHLDB1Q86UU1 1377 aa17.05■□□□□ 0.32
SMPD4-208ENST00000439029 MLECQ14165 292 aa17.05■□□□□ 0.32
SMPD4-208ENST00000439029 ATP10BO94823 1461 aa17.05■□□□□ 0.32
SMPD4-208ENST00000439029 ABCA9Q8IUA7 1624 aa17.03■□□□□ 0.32
SMPD4-208ENST00000439029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.32
SMPD4-208ENST00000439029 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
SMPD4-208ENST00000439029 CTTNBP2Q8WZ74 1663 aa17.01■□□□□ 0.31
SMPD4-208ENST00000439029 NEO1Q92859 1461 aa17.01■□□□□ 0.31
SMPD4-208ENST00000439029 SPATA31D1Q6ZQQ2 1576 aa17■□□□□ 0.31
SMPD4-208ENST00000439029 ARHGEF40Q8TER5 1519 aa16.98■□□□□ 0.31
SMPD4-208ENST00000439029 SIGLEC1Q9BZZ2 1709 aa16.95■□□□□ 0.3
SMPD4-208ENST00000439029 DENND4BO75064 1496 aaPredicted RBP16.94■□□□□ 0.3
SMPD4-208ENST00000439029 CEBPAP49715 358 aaPredicted RBP16.94■□□□□ 0.3
SMPD4-208ENST00000439029 FAM9AQ8IZU1 332 aaPredicted RBP16.94■□□□□ 0.3
SMPD4-208ENST00000439029 POGZQ7Z3K3 1410 aa16.94■□□□□ 0.3
SMPD4-208ENST00000439029 YEATS2Q9ULM3 1422 aa16.93■□□□□ 0.3
SMPD4-208ENST00000439029 FANCAO15360 1455 aa16.93■□□□□ 0.3
SMPD4-208ENST00000439029 AKNAQ7Z591 1439 aa16.92■□□□□ 0.3
SMPD4-208ENST00000439029 RICTORQ6R327 1708 aa16.9■□□□□ 0.3
SMPD4-208ENST00000439029 FER1L4A9Z1Z3 1794 aa16.89■□□□□ 0.29
SMPD4-208ENST00000439029 FHOD3Q2V2M9 1422 aa16.87■□□□□ 0.29
SMPD4-208ENST00000439029 ZFYVE16Q7Z3T8 1539 aa16.87■□□□□ 0.29
SMPD4-208ENST00000439029 DMRT2Q9Y5R5 561 aa16.86■□□□□ 0.29
SMPD4-208ENST00000439029 STRCQ7RTU9 1775 aa16.86■□□□□ 0.29
SMPD4-208ENST00000439029 TTC37Q6PGP7 1564 aa16.85■□□□□ 0.29
SMPD4-208ENST00000439029 RANGAP1P46060 587 aaPredicted RBP16.84■□□□□ 0.29
SMPD4-208ENST00000439029 RAPGEF6Q8TEU7 1601 aa16.84■□□□□ 0.29
SMPD4-208ENST00000439029 PREX1Q8TCU6 1659 aa16.83■□□□□ 0.28
SMPD4-208ENST00000439029 EFCAB5A4FU69 1503 aa16.82■□□□□ 0.28
SMPD4-208ENST00000439029 ZMYM4Q5VZL5 1548 aa16.81■□□□□ 0.28
SMPD4-208ENST00000439029 PLEKHD1A6NEE1 506 aa16.81■□□□□ 0.28
SMPD4-208ENST00000439029 HECW1Q76N89 1606 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms