RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 MYT1LQ9UL68 1186 aa9.16□□□□□ -0.94
CSDE1-205ENST00000438362 RAPGEF2Q9Y4G8 1499 aa9.15□□□□□ -0.95
CSDE1-205ENST00000438362 EIF4G2P78344 907 aaKnown RBP eCLIP9.14□□□□□ -0.95
CSDE1-205ENST00000438362 TIMELESSQ9UNS1 1208 aa9.14□□□□□ -0.95
CSDE1-205ENST00000438362 ZNF777Q9ULD5 760 aaPredicted RBP9.14□□□□□ -0.95
CSDE1-205ENST00000438362 SMARCA2P51531 1590 aa9.13□□□□□ -0.95
CSDE1-205ENST00000438362 MRS2Q9HD23 443 aa9.13□□□□□ -0.95
CSDE1-205ENST00000438362 PPP6R1Q9UPN7 881 aa9.13□□□□□ -0.95
CSDE1-205ENST00000438362 FHAD1B1AJZ9 1412 aa9.13□□□□□ -0.95
CSDE1-205ENST00000438362 FBLN2P98095 1184 aa9.13□□□□□ -0.95
CSDE1-205ENST00000438362 RRP7BPQ9NSQ0 103 aa9.13□□□□□ -0.95
CSDE1-205ENST00000438362 CARMIL1Q5VZK9 1371 aa9.12□□□□□ -0.95
CSDE1-205ENST00000438362 ANP32AP39687 249 aaKnown RBP9.12□□□□□ -0.95
CSDE1-205ENST00000438362 IRX6P78412 446 aaPredicted RBP9.12□□□□□ -0.95
CSDE1-205ENST00000438362 SETD5Q9C0A6 1442 aa9.12□□□□□ -0.95
CSDE1-205ENST00000438362 CUX2O14529 1486 aa9.12□□□□□ -0.95
CSDE1-205ENST00000438362 ANP32EQ9BTT0 268 aa9.11□□□□□ -0.95
CSDE1-205ENST00000438362 DHX57Q6P158 1386 aaKnown RBP9.11□□□□□ -0.95
CSDE1-205ENST00000438362 RAB3GAP2Q9H2M9 1393 aa9.1□□□□□ -0.95
CSDE1-205ENST00000438362 ATAD2BQ9ULI0 1458 aa9.09□□□□□ -0.95
CSDE1-205ENST00000438362 CCER2I3L3R5 266 aa9.08□□□□□ -0.96
CSDE1-205ENST00000438362 TMC1Q8TDI8 760 aa9.07□□□□□ -0.96
CSDE1-205ENST00000438362 CCDC136Q96JN2 1154 aa9.06□□□□□ -0.96
CSDE1-205ENST00000438362 SLC4A1APQ9BWU0 796 aaKnown RBP9.06□□□□□ -0.96
CSDE1-205ENST00000438362 NPM2Q86SE8 214 aaKnown RBP9.03□□□□□ -0.96
CSDE1-205ENST00000438362 ARHGAP35Q9NRY4 1499 aa9.03□□□□□ -0.96
CSDE1-205ENST00000438362 PPP1R15AO75807 674 aaPredicted RBP9.03□□□□□ -0.96
CSDE1-205ENST00000438362 TSHZ2Q9NRE2 1034 aa9.02□□□□□ -0.97
CSDE1-205ENST00000438362 SALL2Q9Y467 1007 aaPredicted RBP9.01□□□□□ -0.97
CSDE1-205ENST00000438362 KIF21BO75037 1637 aa9□□□□□ -0.97
CSDE1-205ENST00000438362 TSPY4P0CV99 314 aa9□□□□□ -0.97
CSDE1-205ENST00000438362 TSPY10P0CW01 314 aa9□□□□□ -0.97
CSDE1-205ENST00000438362 PPP4R2Q9NY27 417 aa9□□□□□ -0.97
CSDE1-205ENST00000438362 KDM2AQ9Y2K7 1162 aa9□□□□□ -0.97
CSDE1-205ENST00000438362 ZBTB47Q9UFB7 747 aaPredicted RBP8.99□□□□□ -0.97
CSDE1-205ENST00000438362 RBM19Q9Y4C8 960 aaKnown RBP8.99□□□□□ -0.97
CSDE1-205ENST00000438362 KCNH8Q96L42 1107 aa8.99□□□□□ -0.97
CSDE1-205ENST00000438362 NBR1Q14596 966 aa8.98□□□□□ -0.97
CSDE1-205ENST00000438362 HSPA5P11021 654 aaKnown RBP8.97□□□□□ -0.97
CSDE1-205ENST00000438362 FMN1Q68DA7 1419 aa8.97□□□□□ -0.97
CSDE1-205ENST00000438362 CANXP27824 592 aaKnown RBP8.96□□□□□ -0.98
CSDE1-205ENST00000438362 CFDP1Q9UEE9 299 aaPredicted RBP8.96□□□□□ -0.98
CSDE1-205ENST00000438362 SYNJ1O43426 1573 aa8.95□□□□□ -0.98
CSDE1-205ENST00000438362 FHOD3Q2V2M9 1422 aa8.95□□□□□ -0.98
CSDE1-205ENST00000438362 CADPSQ9ULU8 1353 aa8.95□□□□□ -0.98
CSDE1-205ENST00000438362 CHMP7Q8WUX9 453 aaPredicted RBP8.94□□□□□ -0.98
CSDE1-205ENST00000438362 B4GALNT3Q6L9W6 998 aa8.94□□□□□ -0.98
CSDE1-205ENST00000438362 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.94□□□□□ -0.981e-10■■□□□ 13.5
CSDE1-205ENST00000438362 ERICH6BQ5W0A0 696 aa8.93□□□□□ -0.98
CSDE1-205ENST00000438362 SENP3-EIF4A1A0A087X0R7 540 aa8.92□□□□□ -0.98
CSDE1-205ENST00000438362 CARD11Q9BXL7 1154 aa8.92□□□□□ -0.98
CSDE1-205ENST00000438362 PLEKHD1A6NEE1 506 aa8.92□□□□□ -0.98
CSDE1-205ENST00000438362 IGF1RP08069 1367 aa8.92□□□□□ -0.98
CSDE1-205ENST00000438362 ARAP1Q96P48 1450 aa8.91□□□□□ -0.98
CSDE1-205ENST00000438362 ERICH3Q5RHP9 1530 aa8.91□□□□□ -0.98
CSDE1-205ENST00000438362 RRBP1Q9P2E9 1410 aaKnown RBP8.91□□□□□ -0.98
CSDE1-205ENST00000438362 MPHOSPH9Q99550 1183 aa8.91□□□□□ -0.98
CSDE1-205ENST00000438362 TDRD9Q8NDG6 1382 aaKnown RBP8.9□□□□□ -0.98
CSDE1-205ENST00000438362 EIF4G1Q04637 1599 aaKnown RBP8.9□□□□□ -0.98
CSDE1-205ENST00000438362 WDR43Q15061 677 aaKnown RBP eCLIP8.9□□□□□ -0.98
CSDE1-205ENST00000438362 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.9□□□□□ -0.98
CSDE1-205ENST00000438362 PRXQ9BXM0 1461 aa8.9□□□□□ -0.99
CSDE1-205ENST00000438362 RGL3Q3MIN7 710 aa8.88□□□□□ -0.99
CSDE1-205ENST00000438362 L3MBTL2Q969R5 705 aa8.88□□□□□ -0.99
CSDE1-205ENST00000438362 PHLDB1Q86UU1 1377 aa8.88□□□□□ -0.99
CSDE1-205ENST00000438362 NOP58Q9Y2X3 529 aaKnown RBP8.87□□□□□ -0.99
CSDE1-205ENST00000438362 LRRC9Q6ZRR7 1453 aa8.86□□□□□ -0.99
CSDE1-205ENST00000438362 NCAPD3P42695 1498 aa8.86□□□□□ -0.99
CSDE1-205ENST00000438362 CCDC18Q5T9S5 1454 aa8.85□□□□□ -0.99
CSDE1-205ENST00000438362 TOP2BQ02880 1626 aa8.85□□□□□ -0.99
CSDE1-205ENST00000438362 FGD5Q6ZNL6 1462 aa8.84□□□□□ -0.99
CSDE1-205ENST00000438362 PKD2Q13563 968 aa8.83□□□□□ -1
CSDE1-205ENST00000438362 UPF2Q9HAU5 1272 aaKnown RBP8.83□□□□□ -1
CSDE1-205ENST00000438362 CHGAP10645 457 aaKnown RBP8.83□□□□□ -1
CSDE1-205ENST00000438362 DCAF11Q8TEB1 546 aa8.83□□□□□ -1
CSDE1-205ENST00000438362 DDRGK1Q96HY6 314 aa8.83□□□□□ -1
CSDE1-205ENST00000438362 BCL11AQ9H165 835 aa8.83□□□□□ -1
CSDE1-205ENST00000438362 FGD6Q6ZV73 1430 aa8.82□□□□□ -1
CSDE1-205ENST00000438362 FANCD2Q9BXW9 1451 aa8.82□□□□□ -1
CSDE1-205ENST00000438362 PDS5BQ9NTI5 1447 aa8.82□□□□□ -1
CSDE1-205ENST00000438362 NEFMP07197 916 aa8.82□□□□□ -1
CSDE1-205ENST00000438362 PRKRIP1Q9H875 184 aaPredicted RBP8.82□□□□□ -1
CSDE1-205ENST00000438362 KNSTRNQ9Y448 316 aa8.81□□□□□ -1
CSDE1-205ENST00000438362 UACAQ9BZF9 1416 aa8.81□□□□□ -1
CSDE1-205ENST00000438362 CFTRP13569 1480 aa8.81□□□□□ -1
CSDE1-205ENST00000438362 CDCA8Q53HL2 280 aa8.8□□□□□ -1
CSDE1-205ENST00000438362 NUDCQ9Y266 331 aa8.8□□□□□ -1
CSDE1-205ENST00000438362 PPM1GO15355 546 aaPredicted RBP8.8□□□□□ -1
CSDE1-205ENST00000438362 CUX1P39880 1505 aa8.79□□□□□ -1
CSDE1-205ENST00000438362 CC2D1BQ5T0F9 858 aaKnown RBP8.78□□□□□ -1
CSDE1-205ENST00000438362 CASKIN1Q8WXD9 1431 aa8.78□□□□□ -1
CSDE1-205ENST00000438362 ZBED9Q6R2W3 1325 aa8.78□□□□□ -1
CSDE1-205ENST00000438362 DEKP35659 375 aaKnown RBP8.78□□□□□ -1
CSDE1-205ENST00000438362 MYOM3Q5VTT5 1437 aa8.78□□□□□ -1
CSDE1-205ENST00000438362 RAD54L2Q9Y4B4 1467 aa8.77□□□□□ -1.01
CSDE1-205ENST00000438362 RALBP1Q15311 655 aa8.77□□□□□ -1.01
CSDE1-205ENST00000438362 NUP155O75694 1391 aa8.77□□□□□ -1.01
CSDE1-205ENST00000438362 ANKRD30AQ9BXX3 1397 aa8.77□□□□□ -1.01
CSDE1-205ENST00000438362 LAS1LQ9Y4W2 734 aaKnown RBP8.77□□□□□ -1.01
CSDE1-205ENST00000438362 TIAM1Q13009 1591 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms