RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 NISCHQ9Y2I1 1504 aa12.18□□□□□ -0.46
CSDE1-205ENST00000438362 AEBP2Q6ZN18 517 aaPredicted RBP12.18□□□□□ -0.46
CSDE1-205ENST00000438362 CHIC1Q5VXU3 224 aa12.05□□□□□ -0.48
CSDE1-205ENST00000438362 DCAF8L2P0C7V8 631 aa11.38□□□□□ -0.59
CSDE1-205ENST00000438362 SUPT5HO00267 1087 aaKnown RBP11.28□□□□□ -0.6
CSDE1-205ENST00000438362 SHROOM4Q9ULL8 1493 aa11.2□□□□□ -0.62
CSDE1-205ENST00000438362 PCGF6Q9BYE7 350 aa10.73□□□□□ -0.69
CSDE1-205ENST00000438362 SENP3Q9H4L4 574 aaPredicted RBP10.69□□□□□ -0.7
CSDE1-205ENST00000438362 EHMT2Q96KQ7 1210 aa10.6□□□□□ -0.71
CSDE1-205ENST00000438362 FAM9AQ8IZU1 332 aaPredicted RBP10.53□□□□□ -0.72
CSDE1-205ENST00000438362 HRCP23327 699 aa10.51□□□□□ -0.73
CSDE1-205ENST00000438362 TRIM41Q8WV44 630 aa10.46□□□□□ -0.73
CSDE1-205ENST00000438362 ZEB1P37275 1124 aaPredicted RBP10.45□□□□□ -0.74
CSDE1-205ENST00000438362 PHF23Q9BUL5 403 aaPredicted RBP10.43□□□□□ -0.74
CSDE1-205ENST00000438362 TRIM26Q12899 539 aaPredicted RBP10.37□□□□□ -0.75
CSDE1-205ENST00000438362 LOC105371045A0A1W2PR82 267 aa10.36□□□□□ -0.75
CSDE1-205ENST00000438362 TTBK1Q5TCY1 1321 aaPredicted RBP10.28□□□□□ -0.76
CSDE1-205ENST00000438362 CCER1Q8TC90 406 aaPredicted RBP10.27□□□□□ -0.76
CSDE1-205ENST00000438362 PPARGC1BQ86YN6 1023 aaKnown RBP10.27□□□□□ -0.77
CSDE1-205ENST00000438362 APLP2Q06481 763 aa10.26□□□□□ -0.77
CSDE1-205ENST00000438362 CENPBP07199 599 aaPredicted RBP10.21□□□□□ -0.78
CSDE1-205ENST00000438362 ZCCHC6Q5VYS8 1495 aaKnown RBP10.2□□□□□ -0.78
CSDE1-205ENST00000438362 PELP1Q8IZL8 1130 aaKnown RBP10.2□□□□□ -0.78
CSDE1-205ENST00000438362 UBTFP17480 764 aaKnown RBP10.15□□□□□ -0.78
CSDE1-205ENST00000438362 RANGAP1P46060 587 aaPredicted RBP10.06□□□□□ -0.8
CSDE1-205ENST00000438362 CCDC180Q9P1Z9 1646 aa10.03□□□□□ -0.8
CSDE1-205ENST00000438362 DCAF1Q9Y4B6 1507 aa10.03□□□□□ -0.8
CSDE1-205ENST00000438362 MYO15BQ96JP2 1530 aa10.01□□□□□ -0.81
CSDE1-205ENST00000438362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.99□□□□□ -0.81
CSDE1-205ENST00000438362 YTHDC1Q96MU7 727 aaKnown RBP9.98□□□□□ -0.81
CSDE1-205ENST00000438362 DIEXFQ68CQ4 756 aaKnown RBP9.92□□□□□ -0.82
CSDE1-205ENST00000438362 ABCC9O60706 1549 aa9.9□□□□□ -0.82
CSDE1-205ENST00000438362 HNRNPUL2Q1KMD3 747 aaKnown RBP9.9□□□□□ -0.82
CSDE1-205ENST00000438362 MYT1Q01538 1121 aa9.88□□□□□ -0.83
CSDE1-205ENST00000438362 PLPPR3Q6T4P5 718 aa9.85□□□□□ -0.83
CSDE1-205ENST00000438362 SCRIBQ14160 1630 aa9.83□□□□□ -0.84
CSDE1-205ENST00000438362 ATP1B4Q9UN42 357 aaPredicted RBP9.83□□□□□ -0.84
CSDE1-205ENST00000438362 RSF1Q96T23 1441 aaPredicted RBP9.78□□□□□ -0.84
CSDE1-205ENST00000438362 GTF3C3Q9Y5Q9 886 aa9.77□□□□□ -0.85
CSDE1-205ENST00000438362 CSRNP3Q8WYN3 585 aa9.76□□□□□ -0.85
CSDE1-205ENST00000438362 ACIN1Q9UKV3 1341 aaKnown RBP9.76□□□□□ -0.85
CSDE1-205ENST00000438362 ITGAEP38570 1179 aa9.76□□□□□ -0.85
CSDE1-205ENST00000438362 NEFLP07196 543 aa9.75□□□□□ -0.85
CSDE1-205ENST00000438362 ZNF316A6NFI3 1004 aaPredicted RBP9.74□□□□□ -0.85
CSDE1-205ENST00000438362 PABPN1Q86U42 306 aaKnown RBP eCLIP9.73□□□□□ -0.85
CSDE1-205ENST00000438362 FOXD1Q16676 465 aa9.71□□□□□ -0.86
CSDE1-205ENST00000438362 ERICH6Q7L0X2 663 aa9.66□□□□□ -0.86
CSDE1-205ENST00000438362 SCAF1Q9H7N4 1312 aaKnown RBP9.66□□□□□ -0.86
CSDE1-205ENST00000438362 NEUROD1Q13562 356 aa9.63□□□□□ -0.87
CSDE1-205ENST00000438362 RB1CC1Q8TDY2 1594 aa9.61□□□□□ -0.87
CSDE1-205ENST00000438362 FAM50AQ14320 339 aaKnown RBP9.56□□□□□ -0.88
CSDE1-205ENST00000438362 CEP162Q5TB80 1403 aa9.55□□□□□ -0.88
CSDE1-205ENST00000438362 NACADO15069 1562 aa9.55□□□□□ -0.88
CSDE1-205ENST00000438362 CECR2Q9BXF3 1484 aa9.55□□□□□ -0.88
CSDE1-205ENST00000438362 EEA1Q15075 1411 aa9.54□□□□□ -0.88
CSDE1-205ENST00000438362 TNIKQ9UKE5 1360 aa9.51□□□□□ -0.89
CSDE1-205ENST00000438362 CLIP1P30622 1438 aa9.5□□□□□ -0.89
CSDE1-205ENST00000438362 GOLGA3Q08378 1498 aa9.49□□□□□ -0.89
CSDE1-205ENST00000438362 MIER1Q8N108 512 aa9.49□□□□□ -0.89
CSDE1-205ENST00000438362 BAZ1AQ9NRL2 1556 aaPredicted RBP9.47□□□□□ -0.89
CSDE1-205ENST00000438362 CLSPNQ9HAW4 1339 aa9.47□□□□□ -0.89
CSDE1-205ENST00000438362 BCANQ96GW7 911 aa9.46□□□□□ -0.89
CSDE1-205ENST00000438362 MROH2BQ7Z745 1585 aa9.46□□□□□ -0.89
CSDE1-205ENST00000438362 ANP32CO43423 234 aa9.46□□□□□ -0.9
CSDE1-205ENST00000438362 WRNQ14191 1432 aaPredicted RBP eCLIP9.45□□□□□ -0.92e-7■□□□□ 9.9
CSDE1-205ENST00000438362 POLR3GLQ9BT43 218 aa9.43□□□□□ -0.9
CSDE1-205ENST00000438362 P3H3Q8IVL6 736 aa9.42□□□□□ -0.9
CSDE1-205ENST00000438362 SOGA1O94964 1423 aa9.41□□□□□ -0.9
CSDE1-205ENST00000438362 CEP164Q9UPV0 1460 aa9.41□□□□□ -0.9
CSDE1-205ENST00000438362 TRIM52Q96A61 297 aa9.4□□□□□ -0.9
CSDE1-205ENST00000438362 CNGB1Q14028 1251 aaPredicted RBP9.38□□□□□ -0.91
CSDE1-205ENST00000438362 CCDC88BA6NC98 1476 aa9.37□□□□□ -0.91
CSDE1-205ENST00000438362 DDX10Q13206 875 aaKnown RBP9.36□□□□□ -0.91
CSDE1-205ENST00000438362 ABCC8Q09428 1581 aa9.35□□□□□ -0.91
CSDE1-205ENST00000438362 WIZO95785 1651 aa9.34□□□□□ -0.91
CSDE1-205ENST00000438362 FKBP8Q14318 412 aa9.34□□□□□ -0.91
CSDE1-205ENST00000438362 CDK11AQ9UQ88 783 aaPredicted RBP9.32□□□□□ -0.92
CSDE1-205ENST00000438362 TONSLQ96HA7 1378 aa9.32□□□□□ -0.92
CSDE1-205ENST00000438362 BAZ1BQ9UIG0 1483 aaKnown RBP9.31□□□□□ -0.92
CSDE1-205ENST00000438362 VPS8Q8N3P4 1428 aa9.3□□□□□ -0.92
CSDE1-205ENST00000438362 TOP2AP11388 1531 aaKnown RBP9.28□□□□□ -0.92
CSDE1-205ENST00000438362 KIF27Q86VH2 1401 aa9.27□□□□□ -0.93
CSDE1-205ENST00000438362 MSH5O43196 834 aa9.26□□□□□ -0.93
CSDE1-205ENST00000438362 HNRNPUQ00839 825 aaKnown RBP eCLIP9.25□□□□□ -0.93
CSDE1-205ENST00000438362 ZNF326Q5BKZ1 582 aaKnown RBP9.25□□□□□ -0.93
CSDE1-205ENST00000438362 DAXXQ9UER7 740 aaPredicted RBP9.24□□□□□ -0.93
CSDE1-205ENST00000438362 PIAS4Q8N2W9 510 aaPredicted RBP9.23□□□□□ -0.93
CSDE1-205ENST00000438362 HIRIP3Q9BW71 556 aaPredicted RBP9.23□□□□□ -0.93
CSDE1-205ENST00000438362 CCNB3Q8WWL7 1395 aa9.23□□□□□ -0.93
CSDE1-205ENST00000438362 RTL5Q5HYW3 569 aaPredicted RBP9.23□□□□□ -0.93
CSDE1-205ENST00000438362 ARID3CA6NKF2 412 aa9.22□□□□□ -0.93
CSDE1-205ENST00000438362 MTUS2Q5JR59 1369 aa9.21□□□□□ -0.93
CSDE1-205ENST00000438362 RUSC2Q8N2Y8 1516 aa9.2□□□□□ -0.94
CSDE1-205ENST00000438362 ADRA2BP18089 450 aa9.2□□□□□ -0.94
CSDE1-205ENST00000438362 SUPT16HQ9Y5B9 1047 aaKnown RBP9.2□□□□□ -0.94
CSDE1-205ENST00000438362 KANK4Q5T7N3 995 aaPredicted RBP9.19□□□□□ -0.94
CSDE1-205ENST00000438362 CHIC2Q9UKJ5 165 aa9.19□□□□□ -0.94
CSDE1-205ENST00000438362 SIN3AQ96ST3 1273 aa9.18□□□□□ -0.94
CSDE1-205ENST00000438362 SMARCA4P51532 1647 aa9.17□□□□□ -0.94
CSDE1-205ENST00000438362 FAM9BQ8IZU0 186 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms