RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 CUL7Q14999 1698 aa28.33■■■□□ 2.13
TTC28-202ENST00000431039 AEBP2Q6ZN18 517 aaPredicted RBP28.33■■■□□ 2.13
TTC28-202ENST00000431039 KIF27Q86VH2 1401 aa28.3■■■□□ 2.12
TTC28-202ENST00000431039 IGF1RP08069 1367 aa28.27■■■□□ 2.12
TTC28-202ENST00000431039 ADCY10Q96PN6 1610 aa28.25■■■□□ 2.11
TTC28-202ENST00000431039 KIAA0586Q9BVV6 1533 aa28.24■■■□□ 2.11
TTC28-202ENST00000431039 NPM1P06748 294 aaKnown RBP eCLIP28.19■■■□□ 2.1
TTC28-202ENST00000431039 MAPKBP1O60336 1514 aa28.18■■■□□ 2.1
TTC28-202ENST00000431039 ABCC10Q5T3U5 1492 aa28.16■■■□□ 2.1
TTC28-202ENST00000431039 DIP2BQ9P265 1576 aa28.16■■■□□ 2.1
TTC28-202ENST00000431039 FAM69CQ0P6D2 419 aa28.15■■■□□ 2.1
TTC28-202ENST00000431039 CARMIL1Q5VZK9 1371 aa28.11■■■□□ 2.09
TTC28-202ENST00000431039 TSPOAP1O95153 1857 aa28.08■■■□□ 2.09
TTC28-202ENST00000431039 TTBK1Q5TCY1 1321 aaPredicted RBP28.06■■■□□ 2.08
TTC28-202ENST00000431039 IQGAP2Q13576 1575 aa28.03■■■□□ 2.08
TTC28-202ENST00000431039 PTPRGP23470 1445 aa28.01■■■□□ 2.08
TTC28-202ENST00000431039 CARMIL2Q6F5E8 1435 aa27.98■■■□□ 2.07
TTC28-202ENST00000431039 KDM6BO15054 1643 aa27.96■■■□□ 2.07
TTC28-202ENST00000431039 TNIKQ9UKE5 1360 aa27.96■■■□□ 2.07
TTC28-202ENST00000431039 ABCC2Q92887 1545 aa27.91■■■□□ 2.06
TTC28-202ENST00000431039 CHIC1Q5VXU3 224 aa27.88■■■□□ 2.05
TTC28-202ENST00000431039 DISP1Q96F81 1524 aa27.87■■■□□ 2.05
TTC28-202ENST00000431039 RAPGEF2Q9Y4G8 1499 aa27.85■■■□□ 2.05
TTC28-202ENST00000431039 ASXL2Q76L83 1435 aa27.83■■■□□ 2.05
TTC28-202ENST00000431039 UHRF1BP1LA0JNW5 1464 aa27.82■■■□□ 2.04
TTC28-202ENST00000431039 UACAQ9BZF9 1416 aa27.81■■■□□ 2.04
TTC28-202ENST00000431039 UGGT2Q9NYU1 1516 aa27.8■■■□□ 2.04
TTC28-202ENST00000431039 PPRC1Q5VV67 1664 aaKnown RBP27.8■■■□□ 2.04
TTC28-202ENST00000431039 PLB1Q6P1J6 1458 aa27.79■■■□□ 2.04
TTC28-202ENST00000431039 KIAA0556O60303 1618 aa27.78■■■□□ 2.04
TTC28-202ENST00000431039 GLI2P10070 1586 aa27.77■■■□□ 2.04
TTC28-202ENST00000431039 CTTNBP2Q8WZ74 1663 aa27.76■■■□□ 2.03
TTC28-202ENST00000431039 ZCCHC11Q5TAX3 1644 aaKnown RBP27.74■■■□□ 2.03
TTC28-202ENST00000431039 KDM5BQ9UGL1 1544 aa27.7■■■□□ 2.02
TTC28-202ENST00000431039 EPRSP07814 1512 aaKnown RBP27.67■■■□□ 2.02
TTC28-202ENST00000431039 KDM4FA0A1W2PPD8 638 aa27.66■■■□□ 2.02
TTC28-202ENST00000431039 MAP3K4Q9Y6R4 1608 aa27.66■■■□□ 2.02
TTC28-202ENST00000431039 GOLGA3Q08378 1498 aa27.55■■■□□ 2
TTC28-202ENST00000431039 TEX14Q8IWB6 1497 aa27.54■■■□□ 2
TTC28-202ENST00000431039 COL17A1Q9UMD9 1497 aaPredicted RBP27.54■■■□□ 2
TTC28-202ENST00000431039 WDR7Q9Y4E6 1490 aa27.54■■■□□ 2
TTC28-202ENST00000431039 ABCA8O94911 1581 aa27.52■■■□□ 2
TTC28-202ENST00000431039 PRXQ9BXM0 1461 aa27.51■■■□□ 2
TTC28-202ENST00000431039 ADGRL1O94910 1474 aa27.46■■□□□ 1.99
TTC28-202ENST00000431039 CFAP43Q8NDM7 1665 aa27.44■■□□□ 1.98
TTC28-202ENST00000431039 KCNH8Q96L42 1107 aa27.4■■□□□ 1.98
TTC28-202ENST00000431039 CD109Q6YHK3 1445 aa27.37■■□□□ 1.97
TTC28-202ENST00000431039 P3H3Q8IVL6 736 aa27.35■■□□□ 1.97
TTC28-202ENST00000431039 MAGI3Q5TCQ9 1506 aa27.35■■□□□ 1.97
TTC28-202ENST00000431039 ARID3CA6NKF2 412 aa27.34■■□□□ 1.97
TTC28-202ENST00000431039 SAMD9Q5K651 1589 aa27.28■■□□□ 1.96
TTC28-202ENST00000431039 ATP10BO94823 1461 aa27.25■■□□□ 1.95
TTC28-202ENST00000431039 FAM9AQ8IZU1 332 aaPredicted RBP27.25■■□□□ 1.95
TTC28-202ENST00000431039 CSRNP3Q8WYN3 585 aa27.25■■□□□ 1.95
TTC28-202ENST00000431039 RAPGEF6Q8TEU7 1601 aa27.23■■□□□ 1.95
TTC28-202ENST00000431039 KIF21BO75037 1637 aa27.21■■□□□ 1.95
TTC28-202ENST00000431039 ABCA9Q8IUA7 1624 aa27.18■■□□□ 1.94
TTC28-202ENST00000431039 EEA1Q15075 1411 aa27.17■■□□□ 1.94
TTC28-202ENST00000431039 HECW2Q9P2P5 1572 aa27.15■■□□□ 1.94
TTC28-202ENST00000431039 RANGAP1P46060 587 aaPredicted RBP27.15■■□□□ 1.94
TTC28-202ENST00000431039 ARAP3Q8WWN8 1544 aa27.14■■□□□ 1.94
TTC28-202ENST00000431039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.11■■□□□ 1.93
TTC28-202ENST00000431039 HNRNPUL2Q1KMD3 747 aaKnown RBP27.11■■□□□ 1.93
TTC28-202ENST00000431039 FHOD3Q2V2M9 1422 aa27.09■■□□□ 1.93
TTC28-202ENST00000431039 NUP153P49790 1475 aaKnown RBP27.08■■□□□ 1.93
TTC28-202ENST00000431039 NEO1Q92859 1461 aa27■■□□□ 1.91
TTC28-202ENST00000431039 PHLDB1Q86UU1 1377 aa27■■□□□ 1.91
TTC28-202ENST00000431039 RAPGEF3O95398 923 aa26.99■■□□□ 1.91
TTC28-202ENST00000431039 FRMPD1Q5SYB0 1578 aa26.98■■□□□ 1.91
TTC28-202ENST00000431039 ILDR1Q86SU0 546 aaPredicted RBP26.98■■□□□ 1.91
TTC28-202ENST00000431039 EFCAB5A4FU69 1503 aa26.95■■□□□ 1.91
TTC28-202ENST00000431039 ADAMTSL3P82987 1691 aa26.93■■□□□ 1.9
TTC28-202ENST00000431039 PLEKHD1A6NEE1 506 aa26.9■■□□□ 1.9
TTC28-202ENST00000431039 BCORL1Q5H9F3 1711 aa26.89■■□□□ 1.9
TTC28-202ENST00000431039 RICTORQ6R327 1708 aa26.89■■□□□ 1.9
TTC28-202ENST00000431039 TTC37Q6PGP7 1564 aa26.88■■□□□ 1.89
TTC28-202ENST00000431039 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.88■■□□□ 1.89
TTC28-202ENST00000431039 EHMT2Q96KQ7 1210 aa26.87■■□□□ 1.89
TTC28-202ENST00000431039 CFAP74Q9C0B2 1584 aa26.87■■□□□ 1.89
TTC28-202ENST00000431039 PTPRMP28827 1452 aa26.86■■□□□ 1.89
TTC28-202ENST00000431039 CDK13Q14004 1512 aaKnown RBP26.85■■□□□ 1.89
TTC28-202ENST00000431039 MADDQ8WXG6 1647 aa26.85■■□□□ 1.89
TTC28-202ENST00000431039 ARHGEF40Q8TER5 1519 aa26.85■■□□□ 1.89
TTC28-202ENST00000431039 FANCAO15360 1455 aa26.83■■□□□ 1.89
TTC28-202ENST00000431039 DENND4BO75064 1496 aaPredicted RBP26.83■■□□□ 1.89
TTC28-202ENST00000431039 ARID4BQ4LE39 1312 aaPredicted RBP26.83■■□□□ 1.89
TTC28-202ENST00000431039 AKNAQ7Z591 1439 aa26.82■■□□□ 1.88
TTC28-202ENST00000431039 RIMS1Q86UR5 1692 aaKnown RBP26.78■■□□□ 1.88
TTC28-202ENST00000431039 UBTFP17480 764 aaKnown RBP26.76■■□□□ 1.87
TTC28-202ENST00000431039 HECW1Q76N89 1606 aa26.74■■□□□ 1.87
TTC28-202ENST00000431039 ATP1B4Q9UN42 357 aaPredicted RBP26.73■■□□□ 1.87
TTC28-202ENST00000431039 ZMYM4Q5VZL5 1548 aa26.73■■□□□ 1.87
TTC28-202ENST00000431039 LOC105371045A0A1W2PR82 267 aa26.72■■□□□ 1.87
TTC28-202ENST00000431039 SIGLEC1Q9BZZ2 1709 aa26.72■■□□□ 1.87
TTC28-202ENST00000431039 ZFYVE16Q7Z3T8 1539 aa26.71■■□□□ 1.87
TTC28-202ENST00000431039 ARHGAP35Q9NRY4 1499 aa26.7■■□□□ 1.87
TTC28-202ENST00000431039 MYO5CQ9NQX4 1742 aa26.7■■□□□ 1.86
TTC28-202ENST00000431039 FMN1Q68DA7 1419 aa26.68■■□□□ 1.86
TTC28-202ENST00000431039 YEATS2Q9ULM3 1422 aa26.68■■□□□ 1.86
TTC28-202ENST00000431039 PCF11O94913 1555 aaKnown RBP26.67■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms