RNA–Protein interactions for RNA: ENST00000419007.5

SEMA3B-203, Transcript of semaphorin 3B, humanhuman

TSL 2

Gene SEMA3B, Length 3,283 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-203ENST00000419007 SIN3AQ96ST3 1273 aa21.76■■□□□ 1.07
SEMA3B-203ENST00000419007 FANCD2Q9BXW9 1451 aa21.74■■□□□ 1.07
SEMA3B-203ENST00000419007 CARMIL1Q5VZK9 1371 aa21.74■■□□□ 1.07
SEMA3B-203ENST00000419007 DDX10Q13206 875 aaKnown RBP21.74■■□□□ 1.07
SEMA3B-203ENST00000419007 SETD5Q9C0A6 1442 aa21.7■■□□□ 1.06
SEMA3B-203ENST00000419007 HIRIP3Q9BW71 556 aaPredicted RBP21.69■■□□□ 1.06
SEMA3B-203ENST00000419007 PHLDB1Q86UU1 1377 aa21.68■■□□□ 1.06
SEMA3B-203ENST00000419007 TIAM1Q13009 1591 aa21.67■■□□□ 1.06
SEMA3B-203ENST00000419007 BCANQ96GW7 911 aa21.67■■□□□ 1.06
SEMA3B-203ENST00000419007 MAPKBP1O60336 1514 aa21.66■■□□□ 1.06
SEMA3B-203ENST00000419007 LRRC9Q6ZRR7 1453 aa21.64■■□□□ 1.05
SEMA3B-203ENST00000419007 PDS5BQ9NTI5 1447 aa21.63■■□□□ 1.05
SEMA3B-203ENST00000419007 FGD5Q6ZNL6 1462 aa21.62■■□□□ 1.05
SEMA3B-203ENST00000419007 LAMC3Q9Y6N6 1575 aa21.58■■□□□ 1.04
SEMA3B-203ENST00000419007 WDR97A6NE52 1622 aa21.57■■□□□ 1.04
SEMA3B-203ENST00000419007 FHAD1B1AJZ9 1412 aa21.57■■□□□ 1.04
SEMA3B-203ENST00000419007 TSHZ2Q9NRE2 1034 aa21.56■■□□□ 1.04
SEMA3B-203ENST00000419007 FHOD3Q2V2M9 1422 aa21.55■■□□□ 1.04
SEMA3B-203ENST00000419007 FKBP8Q14318 412 aa21.54■■□□□ 1.04
SEMA3B-203ENST00000419007 MAP3K1Q13233 1512 aa21.53■■□□□ 1.04
SEMA3B-203ENST00000419007 ERCC6Q03468 1493 aa21.53■■□□□ 1.04
SEMA3B-203ENST00000419007 TRIM52Q96A61 297 aa21.5■■□□□ 1.03
SEMA3B-203ENST00000419007 PCF11O94913 1555 aaKnown RBP21.49■■□□□ 1.03
SEMA3B-203ENST00000419007 ANP32CO43423 234 aa21.47■■□□□ 1.03
SEMA3B-203ENST00000419007 PPP1R15AO75807 674 aaPredicted RBP21.46■■□□□ 1.03
SEMA3B-203ENST00000419007 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.02
SEMA3B-203ENST00000419007 PRDM2Q13029 1718 aa21.44■■□□□ 1.02
SEMA3B-203ENST00000419007 NEFLP07196 543 aa21.44■■□□□ 1.02
SEMA3B-203ENST00000419007 URB2Q14146 1524 aaKnown RBP21.43■■□□□ 1.02
SEMA3B-203ENST00000419007 TOPBP1Q92547 1522 aa21.43■■□□□ 1.02
SEMA3B-203ENST00000419007 KIF21AQ7Z4S6 1674 aa21.42■■□□□ 1.02
SEMA3B-203ENST00000419007 TONSLQ96HA7 1378 aa21.42■■□□□ 1.02
SEMA3B-203ENST00000419007 TIMELESSQ9UNS1 1208 aa21.41■■□□□ 1.02
SEMA3B-203ENST00000419007 MTUS2Q5JR59 1369 aa21.38■■□□□ 1.01
SEMA3B-203ENST00000419007 CFAP43Q8NDM7 1665 aa21.37■■□□□ 1.01
SEMA3B-203ENST00000419007 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
SEMA3B-203ENST00000419007 POLA1P09884 1462 aaPredicted RBP21.36■■□□□ 1.01
SEMA3B-203ENST00000419007 FYCO1Q9BQS8 1478 aa21.35■■□□□ 1.01
SEMA3B-203ENST00000419007 CASKIN1Q8WXD9 1431 aa21.34■■□□□ 1.01
SEMA3B-203ENST00000419007 DNMBPQ6XZF7 1577 aa21.33■■□□□ 1.01
SEMA3B-203ENST00000419007 FGD6Q6ZV73 1430 aa21.32■■□□□ 1
SEMA3B-203ENST00000419007 CCER2I3L3R5 266 aa21.31■■□□□ 1
SEMA3B-203ENST00000419007 CCDC18Q5T9S5 1454 aa21.3■■□□□ 1
SEMA3B-203ENST00000419007 MRC2Q9UBG0 1479 aa21.29■■□□□ 1
SEMA3B-203ENST00000419007 FMN1Q68DA7 1419 aa21.28■■□□□ 1
SEMA3B-203ENST00000419007 EFCAB5A4FU69 1503 aa21.26■□□□□ 0.99
SEMA3B-203ENST00000419007 CHIC2Q9UKJ5 165 aa21.26■□□□□ 0.99
SEMA3B-203ENST00000419007 ABCA10Q8WWZ4 1543 aa21.25■□□□□ 0.99
SEMA3B-203ENST00000419007 ANP32EQ9BTT0 268 aa21.24■□□□□ 0.99
SEMA3B-203ENST00000419007 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.24■□□□□ 0.99
SEMA3B-203ENST00000419007 PTPRKQ15262 1439 aa21.24■□□□□ 0.99
SEMA3B-203ENST00000419007 RRP7BPQ9NSQ0 103 aa21.24■□□□□ 0.99
SEMA3B-203ENST00000419007 AQRO60306 1485 aaKnown RBP eCLIP21.21■□□□□ 0.991e-7■■■■□ 24.4
SEMA3B-203ENST00000419007 UACAQ9BZF9 1416 aa21.21■□□□□ 0.99
SEMA3B-203ENST00000419007 HNRNPUQ00839 825 aaKnown RBP eCLIP21.21■□□□□ 0.99
SEMA3B-203ENST00000419007 HFM1A2PYH4 1435 aa21.19■□□□□ 0.98
SEMA3B-203ENST00000419007 ARID3CA6NKF2 412 aa21.18■□□□□ 0.98
SEMA3B-203ENST00000419007 IRX6P78412 446 aaPredicted RBP21.17■□□□□ 0.98
SEMA3B-203ENST00000419007 NCOA2Q15596 1464 aa21.16■□□□□ 0.98
SEMA3B-203ENST00000419007 SNAPC4Q5SXM2 1469 aa21.16■□□□□ 0.98
SEMA3B-203ENST00000419007 RBM19Q9Y4C8 960 aaKnown RBP21.16■□□□□ 0.98
SEMA3B-203ENST00000419007 NAIPQ13075 1403 aa21.15■□□□□ 0.98
SEMA3B-203ENST00000419007 CTTNBP2Q8WZ74 1663 aa21.15■□□□□ 0.98
SEMA3B-203ENST00000419007 CUL7Q14999 1698 aa21.14■□□□□ 0.97
SEMA3B-203ENST00000419007 FBLN2P98095 1184 aa21.14■□□□□ 0.97
SEMA3B-203ENST00000419007 MYOM3Q5VTT5 1437 aa21.14■□□□□ 0.97
SEMA3B-203ENST00000419007 PTPN23Q9H3S7 1636 aa21.13■□□□□ 0.97
SEMA3B-203ENST00000419007 HSPA5P11021 654 aaKnown RBP21.11■□□□□ 0.97
SEMA3B-203ENST00000419007 ZNF608Q9ULD9 1512 aaPredicted RBP21.1■□□□□ 0.97
SEMA3B-203ENST00000419007 GAPVD1Q14C86 1478 aa21.08■□□□□ 0.97
SEMA3B-203ENST00000419007 FOXD1Q16676 465 aa21.07■□□□□ 0.96
SEMA3B-203ENST00000419007 WASHC2AQ641Q2 1341 aa21.06■□□□□ 0.96
SEMA3B-203ENST00000419007 WDR62O43379 1518 aa21.05■□□□□ 0.96
SEMA3B-203ENST00000419007 EIF4G2P78344 907 aaKnown RBP eCLIP21.04■□□□□ 0.96
SEMA3B-203ENST00000419007 GRIN2BQ13224 1484 aa21.03■□□□□ 0.96
SEMA3B-203ENST00000419007 SUPT6HQ7KZ85 1726 aaKnown RBP21.02■□□□□ 0.96
SEMA3B-203ENST00000419007 LRRIQ1Q96JM4 1722 aa21.01■□□□□ 0.95
SEMA3B-203ENST00000419007 THOC2Q8NI27 1593 aaKnown RBP21■□□□□ 0.95
SEMA3B-203ENST00000419007 FAM9BQ8IZU0 186 aa20.99■□□□□ 0.95
SEMA3B-203ENST00000419007 MPHOSPH9Q99550 1183 aa20.99■□□□□ 0.95
SEMA3B-203ENST00000419007 IFT140Q96RY7 1462 aa20.99■□□□□ 0.95
SEMA3B-203ENST00000419007 L3MBTL2Q969R5 705 aa20.99■□□□□ 0.95
SEMA3B-203ENST00000419007 EHBP1L1Q8N3D4 1523 aa20.99■□□□□ 0.95
SEMA3B-203ENST00000419007 CNGB1Q14028 1251 aaPredicted RBP20.98■□□□□ 0.95
SEMA3B-203ENST00000419007 CCDC184Q52MB2 194 aa20.98■□□□□ 0.95
SEMA3B-203ENST00000419007 SAMD9Q5K651 1589 aa20.98■□□□□ 0.95
SEMA3B-203ENST00000419007 TARBP1Q13395 1621 aaKnown RBP20.97■□□□□ 0.95
SEMA3B-203ENST00000419007 CDK11AQ9UQ88 783 aaPredicted RBP20.95■□□□□ 0.94
SEMA3B-203ENST00000419007 MAGI3Q5TCQ9 1506 aa20.95■□□□□ 0.94
SEMA3B-203ENST00000419007 KDM5BQ9UGL1 1544 aa20.95■□□□□ 0.94
SEMA3B-203ENST00000419007 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
SEMA3B-203ENST00000419007 UGGT2Q9NYU1 1516 aa20.94■□□□□ 0.94
SEMA3B-203ENST00000419007 C11orf95C9JLR9 678 aaPredicted RBP20.92■□□□□ 0.94
SEMA3B-203ENST00000419007 MRS2Q9HD23 443 aa20.92■□□□□ 0.94
SEMA3B-203ENST00000419007 ABCA5Q8WWZ7 1642 aa20.9■□□□□ 0.94
SEMA3B-203ENST00000419007 POLR3GLQ9BT43 218 aa20.89■□□□□ 0.93
SEMA3B-203ENST00000419007 KDM6BO15054 1643 aa20.88■□□□□ 0.93
SEMA3B-203ENST00000419007 DENND4BO75064 1496 aaPredicted RBP20.88■□□□□ 0.93
SEMA3B-203ENST00000419007 CDK13Q14004 1512 aaKnown RBP20.87■□□□□ 0.93
SEMA3B-203ENST00000419007 PRKRIP1Q9H875 184 aaPredicted RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms