RNA–Protein interactions for RNA: ENST00000419007.5

SEMA3B-203, Transcript of semaphorin 3B, humanhuman

TSL 2

Gene SEMA3B, Length 3,283 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-203ENST00000419007 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
SEMA3B-203ENST00000419007 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
SEMA3B-203ENST00000419007 SUPT5HO00267 1087 aaKnown RBP26.19■■□□□ 1.78
SEMA3B-203ENST00000419007 CCDC180Q9P1Z9 1646 aa25.7■■□□□ 1.7
SEMA3B-203ENST00000419007 DCAF8L2P0C7V8 631 aa25.69■■□□□ 1.7
SEMA3B-203ENST00000419007 ZCCHC6Q5VYS8 1495 aaKnown RBP25.66■■□□□ 1.7
SEMA3B-203ENST00000419007 CHIC1Q5VXU3 224 aa25.37■■□□□ 1.65
SEMA3B-203ENST00000419007 MYO15BQ96JP2 1530 aa25.28■■□□□ 1.64
SEMA3B-203ENST00000419007 ABCC9O60706 1549 aa25.13■■□□□ 1.61
SEMA3B-203ENST00000419007 HRCP23327 699 aa25.08■■□□□ 1.6
SEMA3B-203ENST00000419007 PCGF6Q9BYE7 350 aa25.07■■□□□ 1.6
SEMA3B-203ENST00000419007 LOC105371045A0A1W2PR82 267 aa24.8■■□□□ 1.56
SEMA3B-203ENST00000419007 PPARGC1BQ86YN6 1023 aaKnown RBP24.7■■□□□ 1.54
SEMA3B-203ENST00000419007 DCAF1Q9Y4B6 1507 aa24.67■■□□□ 1.54
SEMA3B-203ENST00000419007 TRIM26Q12899 539 aaPredicted RBP24.35■■□□□ 1.49
SEMA3B-203ENST00000419007 FAM9AQ8IZU1 332 aaPredicted RBP24.27■■□□□ 1.48
SEMA3B-203ENST00000419007 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
SEMA3B-203ENST00000419007 SCRIBQ14160 1630 aa24.24■■□□□ 1.47
SEMA3B-203ENST00000419007 EHMT2Q96KQ7 1210 aa24.22■■□□□ 1.47
SEMA3B-203ENST00000419007 RSF1Q96T23 1441 aaPredicted RBP24.2■■□□□ 1.46
SEMA3B-203ENST00000419007 NACADO15069 1562 aa24.15■■□□□ 1.46
SEMA3B-203ENST00000419007 RB1CC1Q8TDY2 1594 aa24.05■■□□□ 1.44
SEMA3B-203ENST00000419007 PABPN1Q86U42 306 aaKnown RBP eCLIP23.92■■□□□ 1.423e-8■■■■□ 20.2
SEMA3B-203ENST00000419007 ZEB1P37275 1124 aaPredicted RBP23.88■■□□□ 1.41
SEMA3B-203ENST00000419007 CECR2Q9BXF3 1484 aa23.79■■□□□ 1.4
SEMA3B-203ENST00000419007 MROH2BQ7Z745 1585 aa23.67■■□□□ 1.38
SEMA3B-203ENST00000419007 WIZO95785 1651 aa23.56■■□□□ 1.36
SEMA3B-203ENST00000419007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.49■■□□□ 1.35
SEMA3B-203ENST00000419007 TTBK1Q5TCY1 1321 aaPredicted RBP23.49■■□□□ 1.35
SEMA3B-203ENST00000419007 UNC13AQ9UPW8 1703 aa23.45■■□□□ 1.35
SEMA3B-203ENST00000419007 CCER1Q8TC90 406 aaPredicted RBP23.44■■□□□ 1.34
SEMA3B-203ENST00000419007 SCAF1Q9H7N4 1312 aaKnown RBP23.34■■□□□ 1.33
SEMA3B-203ENST00000419007 BICRAQ9NZM4 1560 aa23.33■■□□□ 1.33
SEMA3B-203ENST00000419007 BAZ1AQ9NRL2 1556 aaPredicted RBP23.3■■□□□ 1.32
SEMA3B-203ENST00000419007 ABCC8Q09428 1581 aa23.23■■□□□ 1.31
SEMA3B-203ENST00000419007 CCDC88BA6NC98 1476 aa23.19■■□□□ 1.3
SEMA3B-203ENST00000419007 UBTFP17480 764 aaKnown RBP23.15■■□□□ 1.3
SEMA3B-203ENST00000419007 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.29
SEMA3B-203ENST00000419007 SOGA1O94964 1423 aa23.1■■□□□ 1.29
SEMA3B-203ENST00000419007 CEP162Q5TB80 1403 aa23.09■■□□□ 1.29
SEMA3B-203ENST00000419007 TOP2AP11388 1531 aaKnown RBP23.09■■□□□ 1.29
SEMA3B-203ENST00000419007 DIEXFQ68CQ4 756 aaKnown RBP23.07■■□□□ 1.28
SEMA3B-203ENST00000419007 PELP1Q8IZL8 1130 aaKnown RBP23.06■■□□□ 1.28
SEMA3B-203ENST00000419007 CSRNP3Q8WYN3 585 aa23.03■■□□□ 1.28
SEMA3B-203ENST00000419007 SMARCA4P51532 1647 aa23.02■■□□□ 1.28
SEMA3B-203ENST00000419007 NEUROD1Q13562 356 aa23■■□□□ 1.27
SEMA3B-203ENST00000419007 SMARCA2P51531 1590 aa23■■□□□ 1.27
SEMA3B-203ENST00000419007 ACIN1Q9UKV3 1341 aaKnown RBP23■■□□□ 1.27
SEMA3B-203ENST00000419007 WRNQ14191 1432 aaPredicted RBP eCLIP22.97■■□□□ 1.27
SEMA3B-203ENST00000419007 RUSC2Q8N2Y8 1516 aa22.96■■□□□ 1.27
SEMA3B-203ENST00000419007 TNIKQ9UKE5 1360 aa22.96■■□□□ 1.27
SEMA3B-203ENST00000419007 CENPBP07199 599 aaPredicted RBP22.88■■□□□ 1.25
SEMA3B-203ENST00000419007 GTF3C3Q9Y5Q9 886 aa22.84■■□□□ 1.25
SEMA3B-203ENST00000419007 HNRNPUL2Q1KMD3 747 aaKnown RBP22.84■■□□□ 1.25
SEMA3B-203ENST00000419007 EEA1Q15075 1411 aa22.83■■□□□ 1.25
SEMA3B-203ENST00000419007 RANGAP1P46060 587 aaPredicted RBP22.83■■□□□ 1.24
SEMA3B-203ENST00000419007 GOLGA3Q08378 1498 aa22.79■■□□□ 1.24
SEMA3B-203ENST00000419007 ZNF316A6NFI3 1004 aaPredicted RBP22.76■■□□□ 1.23
SEMA3B-203ENST00000419007 YTHDC1Q96MU7 727 aaKnown RBP22.74■■□□□ 1.23
SEMA3B-203ENST00000419007 APLP2Q06481 763 aa22.69■■□□□ 1.22
SEMA3B-203ENST00000419007 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
SEMA3B-203ENST00000419007 CLIP1P30622 1438 aa22.63■■□□□ 1.21
SEMA3B-203ENST00000419007 CEP164Q9UPV0 1460 aa22.61■■□□□ 1.21
SEMA3B-203ENST00000419007 BAZ1BQ9UIG0 1483 aaKnown RBP22.59■■□□□ 1.21
SEMA3B-203ENST00000419007 SYNJ1O43426 1573 aa22.57■■□□□ 1.2
SEMA3B-203ENST00000419007 MIER1Q8N108 512 aa22.53■■□□□ 1.2
SEMA3B-203ENST00000419007 VPS8Q8N3P4 1428 aa22.48■■□□□ 1.19
SEMA3B-203ENST00000419007 RAPGEF2Q9Y4G8 1499 aa22.48■■□□□ 1.19
SEMA3B-203ENST00000419007 KIF21BO75037 1637 aa22.46■■□□□ 1.19
SEMA3B-203ENST00000419007 CC2D2AQ9P2K1 1620 aa22.45■■□□□ 1.19
SEMA3B-203ENST00000419007 DNAJC5BQ9UF47 199 aa22.44■■□□□ 1.18
SEMA3B-203ENST00000419007 PEG3Q9GZU2 1588 aa22.41■■□□□ 1.18
SEMA3B-203ENST00000419007 NCAPD3P42695 1498 aa22.4■■□□□ 1.18
SEMA3B-203ENST00000419007 KANK4Q5T7N3 995 aaPredicted RBP22.25■■□□□ 1.15
SEMA3B-203ENST00000419007 HMGXB3Q12766 1538 aa22.21■■□□□ 1.15
SEMA3B-203ENST00000419007 ITGAEP38570 1179 aa22.21■■□□□ 1.15
SEMA3B-203ENST00000419007 TOP2BQ02880 1626 aa22.19■■□□□ 1.14
SEMA3B-203ENST00000419007 DHX57Q6P158 1386 aaKnown RBP22.16■■□□□ 1.14
SEMA3B-203ENST00000419007 ARAP1Q96P48 1450 aa22.12■■□□□ 1.13
SEMA3B-203ENST00000419007 PRXQ9BXM0 1461 aa22.1■■□□□ 1.13
SEMA3B-203ENST00000419007 CLSPNQ9HAW4 1339 aa22.08■■□□□ 1.13
SEMA3B-203ENST00000419007 ERICH3Q5RHP9 1530 aa22.05■■□□□ 1.12
SEMA3B-203ENST00000419007 KIF27Q86VH2 1401 aa22.04■■□□□ 1.12
SEMA3B-203ENST00000419007 BIVM-ERCC5R4GMW8 1640 aa22.03■■□□□ 1.12
SEMA3B-203ENST00000419007 CUX1P39880 1505 aa21.99■■□□□ 1.11
SEMA3B-203ENST00000419007 CADPSQ9ULU8 1353 aa21.98■■□□□ 1.11
SEMA3B-203ENST00000419007 NESP48681 1621 aa21.97■■□□□ 1.11
SEMA3B-203ENST00000419007 CCNB3Q8WWL7 1395 aa21.97■■□□□ 1.11
SEMA3B-203ENST00000419007 RRBP1Q9P2E9 1410 aaKnown RBP21.94■■□□□ 1.1
SEMA3B-203ENST00000419007 ATP1B4Q9UN42 357 aaPredicted RBP21.91■■□□□ 1.1
SEMA3B-203ENST00000419007 CFTRP13569 1480 aa21.9■■□□□ 1.1
SEMA3B-203ENST00000419007 ARHGAP35Q9NRY4 1499 aa21.9■■□□□ 1.1
SEMA3B-203ENST00000419007 MYT1Q01538 1121 aa21.9■■□□□ 1.1
SEMA3B-203ENST00000419007 SUPT16HQ9Y5B9 1047 aaKnown RBP21.86■■□□□ 1.09
SEMA3B-203ENST00000419007 FAM50AQ14320 339 aaKnown RBP21.85■■□□□ 1.09
SEMA3B-203ENST00000419007 P3H3Q8IVL6 736 aa21.84■■□□□ 1.09
SEMA3B-203ENST00000419007 RAB3GAP2Q9H2M9 1393 aa21.84■■□□□ 1.09
SEMA3B-203ENST00000419007 CUX2O14529 1486 aa21.83■■□□□ 1.08
SEMA3B-203ENST00000419007 KCNH8Q96L42 1107 aa21.81■■□□□ 1.08
SEMA3B-203ENST00000419007 IGF1RP08069 1367 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 206.9 ms