RNA–Protein interactions for RNA: ENST00000418600.6

SYNGAP1-202, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 5,828 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-202ENST00000418600 HDGFP51858 240 aaKnown RBP23.36■■□□□ 1.33
SYNGAP1-202ENST00000418600 KDM2AQ9Y2K7 1162 aa23.34■■□□□ 1.33
SYNGAP1-202ENST00000418600 CLIP1P30622 1438 aa23.34■■□□□ 1.33
SYNGAP1-202ENST00000418600 LMOD2Q6P5Q4 547 aa23.33■■□□□ 1.32
SYNGAP1-202ENST00000418600 CADPSQ9ULU8 1353 aa23.32■■□□□ 1.32
SYNGAP1-202ENST00000418600 BCL11AQ9H165 835 aa23.3■■□□□ 1.32
SYNGAP1-202ENST00000418600 TDRD9Q8NDG6 1382 aaKnown RBP23.29■■□□□ 1.32
SYNGAP1-202ENST00000418600 TONSLQ96HA7 1378 aa23.28■■□□□ 1.32
SYNGAP1-202ENST00000418600 KANK1Q14678 1352 aa23.28■■□□□ 1.32
SYNGAP1-202ENST00000418600 EEA1Q15075 1411 aa23.27■■□□□ 1.32
SYNGAP1-202ENST00000418600 CARMIL1Q5VZK9 1371 aa23.27■■□□□ 1.32
SYNGAP1-202ENST00000418600 ANP32CO43423 234 aa23.25■■□□□ 1.31
SYNGAP1-202ENST00000418600 RRP7BPQ9NSQ0 103 aa23.25■■□□□ 1.31
SYNGAP1-202ENST00000418600 GOLGA3Q08378 1498 aa23.25■■□□□ 1.31
SYNGAP1-202ENST00000418600 CCNB3Q8WWL7 1395 aa23.22■■□□□ 1.31
SYNGAP1-202ENST00000418600 MYO15BQ96JP2 1530 aa23.17■■□□□ 1.3
SYNGAP1-202ENST00000418600 ZNF316A6NFI3 1004 aaPredicted RBP23.15■■□□□ 1.3
SYNGAP1-202ENST00000418600 POGKQ9P215 609 aa23.14■■□□□ 1.3
SYNGAP1-202ENST00000418600 GGT6Q6P531 493 aa23.14■■□□□ 1.29
SYNGAP1-202ENST00000418600 MROH2BQ7Z745 1585 aa23.12■■□□□ 1.29
SYNGAP1-202ENST00000418600 FANCD2Q9BXW9 1451 aa23.11■■□□□ 1.29
SYNGAP1-202ENST00000418600 CCDC88BA6NC98 1476 aa23.1■■□□□ 1.29
SYNGAP1-202ENST00000418600 ATAD2BQ9ULI0 1458 aa23.1■■□□□ 1.29
SYNGAP1-202ENST00000418600 RGL3Q3MIN7 710 aa23.09■■□□□ 1.29
SYNGAP1-202ENST00000418600 ACIN1Q9UKV3 1341 aaKnown RBP23.08■■□□□ 1.29
SYNGAP1-202ENST00000418600 TMC1Q8TDI8 760 aa23.08■■□□□ 1.29
SYNGAP1-202ENST00000418600 ABCC8Q09428 1581 aa23.05■■□□□ 1.28
SYNGAP1-202ENST00000418600 EFCAB2Q5VUJ9 269 aa23.04■■□□□ 1.28
SYNGAP1-202ENST00000418600 ARXQ96QS3 562 aa23.01■■□□□ 1.27
SYNGAP1-202ENST00000418600 NPHP1O15259 732 aa23.01■■□□□ 1.27
SYNGAP1-202ENST00000418600 HRCP23327 699 aa23.01■■□□□ 1.27
SYNGAP1-202ENST00000418600 TOP2AP11388 1531 aaKnown RBP22.99■■□□□ 1.27
SYNGAP1-202ENST00000418600 RTL5Q5HYW3 569 aaPredicted RBP22.99■■□□□ 1.27
SYNGAP1-202ENST00000418600 FHAD1B1AJZ9 1412 aa22.98■■□□□ 1.27
SYNGAP1-202ENST00000418600 FAM69CQ0P6D2 419 aa22.98■■□□□ 1.27
SYNGAP1-202ENST00000418600 JPH4Q96JJ6 628 aa22.98■■□□□ 1.27
SYNGAP1-202ENST00000418600 EID1Q9Y6B2 187 aa22.97■■□□□ 1.27
SYNGAP1-202ENST00000418600 SMARCA4P51532 1647 aa22.95■■□□□ 1.26
SYNGAP1-202ENST00000418600 CCDC9Q9Y3X0 531 aaKnown RBP22.93■■□□□ 1.26
SYNGAP1-202ENST00000418600 WDR43Q15061 677 aaKnown RBP eCLIP22.87■■□□□ 1.259e-6■■■□□ 15.6
SYNGAP1-202ENST00000418600 WIZO95785 1651 aa22.87■■□□□ 1.25
SYNGAP1-202ENST00000418600 CC2D2AQ9P2K1 1620 aa22.86■■□□□ 1.25
SYNGAP1-202ENST00000418600 PPM1GO15355 546 aaPredicted RBP22.84■■□□□ 1.25
SYNGAP1-202ENST00000418600 PTPRGP23470 1445 aa22.84■■□□□ 1.25
SYNGAP1-202ENST00000418600 MEX3CQ5U5Q3 659 aaKnown RBP22.83■■□□□ 1.24
SYNGAP1-202ENST00000418600 CDCA8Q53HL2 280 aa22.82■■□□□ 1.24
SYNGAP1-202ENST00000418600 CEP162Q5TB80 1403 aa22.82■■□□□ 1.24
SYNGAP1-202ENST00000418600 DIEXFQ68CQ4 756 aaKnown RBP22.78■■□□□ 1.24
SYNGAP1-202ENST00000418600 SPAG9O60271 1321 aaKnown RBP22.75■■□□□ 1.23
SYNGAP1-202ENST00000418600 WASHC2CQ9Y4E1 1318 aa22.75■■□□□ 1.23
SYNGAP1-202ENST00000418600 MRC2Q9UBG0 1479 aa22.74■■□□□ 1.23
SYNGAP1-202ENST00000418600 PAK3O75914 559 aaPredicted RBP22.74■■□□□ 1.23
SYNGAP1-202ENST00000418600 KIF3BO15066 747 aa22.73■■□□□ 1.23
SYNGAP1-202ENST00000418600 CFAP53Q96M91 514 aa22.73■■□□□ 1.23
SYNGAP1-202ENST00000418600 FMN1Q68DA7 1419 aa22.71■■□□□ 1.23
SYNGAP1-202ENST00000418600 CSB-PGBD3P0DP91 1061 aa22.7■■□□□ 1.22
SYNGAP1-202ENST00000418600 TNIKQ9UKE5 1360 aa22.7■■□□□ 1.22
SYNGAP1-202ENST00000418600 STK26Q9P289 416 aa22.7■■□□□ 1.22
SYNGAP1-202ENST00000418600 PHF23Q9BUL5 403 aaPredicted RBP22.69■■□□□ 1.22
SYNGAP1-202ENST00000418600 SRPK2P78362 688 aaKnown RBP22.68■■□□□ 1.22
SYNGAP1-202ENST00000418600 RAPGEF2Q9Y4G8 1499 aa22.68■■□□□ 1.22
SYNGAP1-202ENST00000418600 SOX12O15370 315 aa22.66■■□□□ 1.22
SYNGAP1-202ENST00000418600 SAFB2Q14151 953 aaKnown RBP eCLIP22.66■■□□□ 1.22
SYNGAP1-202ENST00000418600 GAPVD1Q14C86 1478 aa22.65■■□□□ 1.22
SYNGAP1-202ENST00000418600 NCAPD3P42695 1498 aa22.65■■□□□ 1.22
SYNGAP1-202ENST00000418600 CARD11Q9BXL7 1154 aa22.63■■□□□ 1.21
SYNGAP1-202ENST00000418600 HNRNPMP52272 730 aaKnown RBP eCLIP22.62■■□□□ 1.21
SYNGAP1-202ENST00000418600 KNSTRNQ9Y448 316 aa22.6■■□□□ 1.21
SYNGAP1-202ENST00000418600 AQRO60306 1485 aaKnown RBP eCLIP22.59■■□□□ 1.212e-6■■■■■ 32.4
SYNGAP1-202ENST00000418600 SALL2Q9Y467 1007 aaPredicted RBP22.59■■□□□ 1.21
SYNGAP1-202ENST00000418600 ARHGAP35Q9NRY4 1499 aa22.59■■□□□ 1.21
SYNGAP1-202ENST00000418600 EIF4G2P78344 907 aaKnown RBP eCLIP22.57■■□□□ 1.21e-7■■■■■ 32.2
SYNGAP1-202ENST00000418600 DNAJC5BQ9UF47 199 aa22.57■■□□□ 1.2
SYNGAP1-202ENST00000418600 CCDC18Q5T9S5 1454 aa22.55■■□□□ 1.2
SYNGAP1-202ENST00000418600 RSPH4AQ5TD94 716 aa22.55■■□□□ 1.2
SYNGAP1-202ENST00000418600 ANKRD30AQ9BXX3 1397 aa22.54■■□□□ 1.2
SYNGAP1-202ENST00000418600 FGD5Q6ZNL6 1462 aa22.53■■□□□ 1.2
SYNGAP1-202ENST00000418600 IFT140Q96RY7 1462 aa22.53■■□□□ 1.2
SYNGAP1-202ENST00000418600 NUDCQ9Y266 331 aa22.52■■□□□ 1.2
SYNGAP1-202ENST00000418600 RAD54L2Q9Y4B4 1467 aa22.52■■□□□ 1.2
SYNGAP1-202ENST00000418600 MYH16Q9H6N6 1097 aa22.51■■□□□ 1.19
SYNGAP1-202ENST00000418600 FAM9BQ8IZU0 186 aa22.51■■□□□ 1.19
SYNGAP1-202ENST00000418600 DCAF11Q8TEB1 546 aa22.5■■□□□ 1.19
SYNGAP1-202ENST00000418600 MAPK8IP3Q9UPT6 1336 aa22.5■■□□□ 1.19
SYNGAP1-202ENST00000418600 HDGFL2Q7Z4V5 671 aaPredicted RBP22.49■■□□□ 1.19
SYNGAP1-202ENST00000418600 DCAF8L1A6NGE4 600 aa22.49■■□□□ 1.19
SYNGAP1-202ENST00000418600 NESP48681 1621 aa22.48■■□□□ 1.19
SYNGAP1-202ENST00000418600 TMX4Q9H1E5 349 aaPredicted RBP22.48■■□□□ 1.19
SYNGAP1-202ENST00000418600 FHOD3Q2V2M9 1422 aa22.48■■□□□ 1.19
SYNGAP1-202ENST00000418600 GRIN2BQ13224 1484 aa22.47■■□□□ 1.19
SYNGAP1-202ENST00000418600 NUTM2DQ5VT03 806 aaPredicted RBP22.47■■□□□ 1.19
SYNGAP1-202ENST00000418600 TNNT2P45379 298 aaPredicted RBP22.44■■□□□ 1.18
SYNGAP1-202ENST00000418600 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.44■■□□□ 1.18
SYNGAP1-202ENST00000418600 NGDNQ8NEJ9 315 aaKnown RBP22.43■■□□□ 1.18
SYNGAP1-202ENST00000418600 LAS1LQ9Y4W2 734 aaKnown RBP22.42■■□□□ 1.18
SYNGAP1-202ENST00000418600 DDX10Q13206 875 aaKnown RBP22.41■■□□□ 1.18
SYNGAP1-202ENST00000418600 NUP155O75694 1391 aa22.39■■□□□ 1.17
SYNGAP1-202ENST00000418600 PKD2Q13563 968 aa22.39■■□□□ 1.17
SYNGAP1-202ENST00000418600 PNNQ9H307 717 aaKnown RBP22.39■■□□□ 1.17
SYNGAP1-202ENST00000418600 EVA1CP58658 441 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms