RNA–Protein interactions for RNA: ENST00000418600.6

SYNGAP1-202, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5 BASIC

Gene SYNGAP1, Length 5,828 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-202ENST00000418600 DCAF8L2P0C7V8 631 aa31.37■■■□□ 2.61
SYNGAP1-202ENST00000418600 NISCHQ9Y2I1 1504 aa29.98■■■□□ 2.39
SYNGAP1-202ENST00000418600 SHROOM4Q9ULL8 1493 aa28.31■■■□□ 2.12
SYNGAP1-202ENST00000418600 SUPT5HO00267 1087 aaKnown RBP28.27■■■□□ 2.12
SYNGAP1-202ENST00000418600 FAM9AQ8IZU1 332 aaPredicted RBP27.99■■■□□ 2.07
SYNGAP1-202ENST00000418600 EHMT2Q96KQ7 1210 aa27.47■■□□□ 1.99
SYNGAP1-202ENST00000418600 APLP2Q06481 763 aa27.19■■□□□ 1.94
SYNGAP1-202ENST00000418600 ABCC9O60706 1549 aa27.13■■□□□ 1.93
SYNGAP1-202ENST00000418600 ATP1B4Q9UN42 357 aaPredicted RBP26.83■■□□□ 1.89
SYNGAP1-202ENST00000418600 RANGAP1P46060 587 aaPredicted RBP26.81■■□□□ 1.88
SYNGAP1-202ENST00000418600 PABPN1Q86U42 306 aaKnown RBP eCLIP26.69■■□□□ 1.86
SYNGAP1-202ENST00000418600 TTBK1Q5TCY1 1321 aaPredicted RBP26.5■■□□□ 1.83
SYNGAP1-202ENST00000418600 MYT1LQ9UL68 1186 aa26.46■■□□□ 1.83
SYNGAP1-202ENST00000418600 TRIM41Q8WV44 630 aa26.38■■□□□ 1.81
SYNGAP1-202ENST00000418600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.28■■□□□ 1.8
SYNGAP1-202ENST00000418600 HNRNPUL2Q1KMD3 747 aaKnown RBP26.28■■□□□ 1.8
SYNGAP1-202ENST00000418600 UBTFP17480 764 aaKnown RBP26.26■■□□□ 1.79
SYNGAP1-202ENST00000418600 PELP1Q8IZL8 1130 aaKnown RBP26■■□□□ 1.75
SYNGAP1-202ENST00000418600 FBLN2P98095 1184 aa25.92■■□□□ 1.74
SYNGAP1-202ENST00000418600 CHIC1Q5VXU3 224 aa25.73■■□□□ 1.71
SYNGAP1-202ENST00000418600 SCRIBQ14160 1630 aa25.37■■□□□ 1.65
SYNGAP1-202ENST00000418600 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
SYNGAP1-202ENST00000418600 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
SYNGAP1-202ENST00000418600 NPM1P06748 294 aaKnown RBP eCLIP25.25■■□□□ 1.63
SYNGAP1-202ENST00000418600 PCGF6Q9BYE7 350 aa25.22■■□□□ 1.63
SYNGAP1-202ENST00000418600 ITGAEP38570 1179 aa25.21■■□□□ 1.63
SYNGAP1-202ENST00000418600 ESF1Q9H501 851 aaKnown RBP25.08■■□□□ 1.61
SYNGAP1-202ENST00000418600 CCER1Q8TC90 406 aaPredicted RBP25.02■■□□□ 1.6
SYNGAP1-202ENST00000418600 BCANQ96GW7 911 aa25.01■■□□□ 1.59
SYNGAP1-202ENST00000418600 SLC4A1APQ9BWU0 796 aaKnown RBP25.01■■□□□ 1.59
SYNGAP1-202ENST00000418600 PLPPR3Q6T4P5 718 aa24.97■■□□□ 1.59
SYNGAP1-202ENST00000418600 PPARGC1BQ86YN6 1023 aaKnown RBP24.97■■□□□ 1.59
SYNGAP1-202ENST00000418600 ERCC6Q03468 1493 aa24.95■■□□□ 1.58
SYNGAP1-202ENST00000418600 POLR3GLQ9BT43 218 aa24.9■■□□□ 1.58
SYNGAP1-202ENST00000418600 ARID3CA6NKF2 412 aa24.88■■□□□ 1.57
SYNGAP1-202ENST00000418600 FAM50AQ14320 339 aaKnown RBP24.81■■□□□ 1.56
SYNGAP1-202ENST00000418600 CHMP7Q8WUX9 453 aaPredicted RBP24.8■■□□□ 1.56
SYNGAP1-202ENST00000418600 NACADO15069 1562 aa24.77■■□□□ 1.56
SYNGAP1-202ENST00000418600 TRIM52Q96A61 297 aa24.73■■□□□ 1.55
SYNGAP1-202ENST00000418600 ERICH6Q7L0X2 663 aa24.72■■□□□ 1.55
SYNGAP1-202ENST00000418600 P3H3Q8IVL6 736 aa24.71■■□□□ 1.55
SYNGAP1-202ENST00000418600 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
SYNGAP1-202ENST00000418600 ZNF777Q9ULD5 760 aaPredicted RBP24.64■■□□□ 1.54
SYNGAP1-202ENST00000418600 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
SYNGAP1-202ENST00000418600 TRHP20396 242 aaPredicted RBP24.6■■□□□ 1.53
SYNGAP1-202ENST00000418600 STAG3Q9UJ98 1225 aa24.59■■□□□ 1.53
SYNGAP1-202ENST00000418600 CENPBP07199 599 aaPredicted RBP24.52■■□□□ 1.52
SYNGAP1-202ENST00000418600 ZEB1P37275 1124 aaPredicted RBP24.48■■□□□ 1.51
SYNGAP1-202ENST00000418600 BAZ1BQ9UIG0 1483 aaKnown RBP24.42■■□□□ 1.5
SYNGAP1-202ENST00000418600 CNGB1Q14028 1251 aaPredicted RBP24.39■■□□□ 1.49
SYNGAP1-202ENST00000418600 LOC105371045A0A1W2PR82 267 aa24.35■■□□□ 1.49
SYNGAP1-202ENST00000418600 ARID4BQ4LE39 1312 aaPredicted RBP24.34■■□□□ 1.49
SYNGAP1-202ENST00000418600 CHGAP10645 457 aaKnown RBP24.3■■□□□ 1.48
SYNGAP1-202ENST00000418600 ZNF326Q5BKZ1 582 aaKnown RBP24.28■■□□□ 1.48
SYNGAP1-202ENST00000418600 NEFLP07196 543 aa24.27■■□□□ 1.48
SYNGAP1-202ENST00000418600 CSRNP3Q8WYN3 585 aa24.22■■□□□ 1.47
SYNGAP1-202ENST00000418600 KCNH8Q96L42 1107 aa24.2■■□□□ 1.47
SYNGAP1-202ENST00000418600 SLC24A1O60721 1099 aa24.19■■□□□ 1.46
SYNGAP1-202ENST00000418600 TRIM26Q12899 539 aaPredicted RBP24.08■■□□□ 1.44
SYNGAP1-202ENST00000418600 SCAF1Q9H7N4 1312 aaKnown RBP24.06■■□□□ 1.44
SYNGAP1-202ENST00000418600 NEUROD1Q13562 356 aa24.05■■□□□ 1.44
SYNGAP1-202ENST00000418600 CECR2Q9BXF3 1484 aa24.02■■□□□ 1.44
SYNGAP1-202ENST00000418600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.01■■□□□ 1.431e-6■■■■□ 21.3
SYNGAP1-202ENST00000418600 C14orf37Q86TY3 774 aa23.99■■□□□ 1.43
SYNGAP1-202ENST00000418600 PDS5BQ9NTI5 1447 aa23.96■■□□□ 1.43
SYNGAP1-202ENST00000418600 NEFMP07197 916 aa23.95■■□□□ 1.42
SYNGAP1-202ENST00000418600 PLEKHD1A6NEE1 506 aa23.94■■□□□ 1.42
SYNGAP1-202ENST00000418600 AEBP2Q6ZN18 517 aaPredicted RBP23.94■■□□□ 1.42
SYNGAP1-202ENST00000418600 TSPY4P0CV99 314 aa23.93■■□□□ 1.42
SYNGAP1-202ENST00000418600 TSPY10P0CW01 314 aa23.93■■□□□ 1.42
SYNGAP1-202ENST00000418600 PPP1R15AO75807 674 aaPredicted RBP23.93■■□□□ 1.42
SYNGAP1-202ENST00000418600 BAZ1AQ9NRL2 1556 aaPredicted RBP23.83■■□□□ 1.4
SYNGAP1-202ENST00000418600 YTHDC1Q96MU7 727 aaKnown RBP23.82■■□□□ 1.4
SYNGAP1-202ENST00000418600 DAXXQ9UER7 740 aaPredicted RBP23.81■■□□□ 1.4
SYNGAP1-202ENST00000418600 A0A0G2JS52 829 aa23.78■■□□□ 1.4
SYNGAP1-202ENST00000418600 HAP1P54257 671 aaPredicted RBP23.78■■□□□ 1.4
SYNGAP1-202ENST00000418600 SMARCA2P51531 1590 aa23.75■■□□□ 1.39
SYNGAP1-202ENST00000418600 MTUS2Q5JR59 1369 aa23.75■■□□□ 1.39
SYNGAP1-202ENST00000418600 EIF4G1Q04637 1599 aaKnown RBP23.69■■□□□ 1.38
SYNGAP1-202ENST00000418600 CHIC2Q9UKJ5 165 aa23.69■■□□□ 1.38
SYNGAP1-202ENST00000418600 MYT1Q01538 1121 aa23.67■■□□□ 1.38
SYNGAP1-202ENST00000418600 SENP3Q9H4L4 574 aaPredicted RBP23.66■■□□□ 1.38
SYNGAP1-202ENST00000418600 ZBTB7CA1YPR0 619 aa23.65■■□□□ 1.38
SYNGAP1-202ENST00000418600 PLEKHG5O94827 1062 aa23.65■■□□□ 1.38
SYNGAP1-202ENST00000418600 KIF27Q86VH2 1401 aa23.65■■□□□ 1.38
SYNGAP1-202ENST00000418600 MLECQ14165 292 aa23.62■■□□□ 1.37
SYNGAP1-202ENST00000418600 WRNQ14191 1432 aaPredicted RBP eCLIP23.61■■□□□ 1.371e-7■■■■■ 66.8
SYNGAP1-202ENST00000418600 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
SYNGAP1-202ENST00000418600 RSF1Q96T23 1441 aaPredicted RBP23.59■■□□□ 1.37
SYNGAP1-202ENST00000418600 ZBTB47Q9UFB7 747 aaPredicted RBP23.57■■□□□ 1.36
SYNGAP1-202ENST00000418600 OSCARQ8IYS5 282 aa23.51■■□□□ 1.35
SYNGAP1-202ENST00000418600 CARMIL2Q6F5E8 1435 aa23.48■■□□□ 1.35
SYNGAP1-202ENST00000418600 CFDP1Q9UEE9 299 aaPredicted RBP23.48■■□□□ 1.35
SYNGAP1-202ENST00000418600 CEP164Q9UPV0 1460 aa23.44■■□□□ 1.34
SYNGAP1-202ENST00000418600 CUX2O14529 1486 aa23.42■■□□□ 1.34
SYNGAP1-202ENST00000418600 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
SYNGAP1-202ENST00000418600 SOGA1O94964 1423 aa23.41■■□□□ 1.34
SYNGAP1-202ENST00000418600 NPM2Q86SE8 214 aaKnown RBP23.4■■□□□ 1.34
SYNGAP1-202ENST00000418600 CLSPNQ9HAW4 1339 aa23.4■■□□□ 1.34
SYNGAP1-202ENST00000418600 CANXP27824 592 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms